RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 XRCC1P18887 633 aaPredicted RBP17.96■□□□□ 0.47
CLN3-206ENST00000360019 HNF4AP41235 474 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 KRT6CP48668 564 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 NEK2P51955 445 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 UBE2IP63279 158 aaKnown RBP17.96■□□□□ 0.47
CLN3-206ENST00000360019 ELOCQ15369 112 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 LACTB2Q53H82 288 aaPredicted RBP17.96■□□□□ 0.47
CLN3-206ENST00000360019 ATG9BQ674R7 924 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 TRIM46Q7Z4K8 759 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 SFRP1Q8N474 314 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 FBXL6Q8N531 539 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 FAM46DQ8NEK8 389 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 LMX1AQ8TE12 382 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 SLC37A2Q8TED4 501 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 NELL1Q92832 810 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 SH3KBP1Q96B97 665 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 MTFMTQ96DP5 389 aaKnown RBP17.96■□□□□ 0.47
CLN3-206ENST00000360019 HAUS8Q9BT25 410 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 PFDN4Q9NQP4 134 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 ARL8BQ9NVJ2 186 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 SNX6Q9UNH7 406 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 CACNA1EQ15878 2313 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 TNRC6BQ9UPQ9 1833 aaKnown RBP17.96■□□□□ 0.47
CLN3-206ENST00000360019 PCM1Q15154 2024 aa17.96■□□□□ 0.46
CLN3-206ENST00000360019 KIR2DS5A0A0G2JLQ3 304 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 A0A0G2JNG1 304 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 KIR2DS3K7RE56 304 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 UBDO15205 165 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 PEX11AO75192 247 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 VPS4BO75351 444 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 PDYNP01213 254 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 T-ENOLP0DO92 83 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 KIR2DS5Q14953 304 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 FRG2Q64ET8 278 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 NXPE4Q6UWF7 544 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 CPSF7Q8N684 471 aaKnown RBP17.95■□□□□ 0.46
CLN3-206ENST00000360019 ZNF548Q8NEK5 533 aaPredicted RBP17.95■□□□□ 0.46
CLN3-206ENST00000360019 WDR20Q8TBZ3 569 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 ZDHHC1Q8WTX9 485 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 PTCD3Q96EY7 689 aaKnown RBP17.95■□□□□ 0.46
CLN3-206ENST00000360019 FRG2BQ96QU4 278 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 SPNS1Q9H2V7 528 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 EHD1Q9H4M9 534 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 ELOVL6Q9H5J4 265 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 POT1Q9NUX5 634 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 CPNE7Q9UBL6 633 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 SLC12A4Q9UP95 1085 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 COPG1Q9Y678 874 aaKnown RBP17.95■□□□□ 0.46
CLN3-206ENST00000360019 TP53BP1Q12888 1972 aaPredicted RBP17.95■□□□□ 0.46
CLN3-206ENST00000360019 A0A1B0GTW7 788 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 OR5K4A6NMS3 321 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 H0YIV9 168 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 KDM1AO60341 852 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 C1GALT1C1LP0DN25 315 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 CDH1P12830 882 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 LBPP18428 481 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 PEBP1P30086 187 aaKnown RBP17.95■□□□□ 0.46
CLN3-206ENST00000360019 HNRNPKP61978 463 aaKnown RBP eCLIP17.95■□□□□ 0.46
CLN3-206ENST00000360019 GPR18Q14330 331 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 KRT72Q14CN4 511 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 AMIGO1Q86WK6 493 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 TRIM48Q8IWZ4 208 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 OR4E2Q8NGC2 313 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 OR2A1Q8NGT9 310 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 SELENOMQ8WWX9 145 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 LCN9Q8WX39 176 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 PCBD2Q9H0N5 130 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 RIC8BQ9NVN3 520 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 GEMIN8Q9NWZ8 242 aaKnown RBP17.95■□□□□ 0.46
CLN3-206ENST00000360019 SPHK1Q9NYA1 384 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 SPASTQ9UBP0 616 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 PILRBQ9UKJ0 227 aa17.95■□□□□ 0.46
CLN3-206ENST00000360019 B4DGG1 531 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 LSM1O15116 133 aaKnown RBP17.94■□□□□ 0.46
CLN3-206ENST00000360019 PRICKLE3O43900 615 aaPredicted RBP17.94■□□□□ 0.46
CLN3-206ENST00000360019 SDC3O75056 442 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 VIPP01282 170 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 SHMT2P34897 504 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 CTSKP43235 329 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 HMGCS1Q01581 520 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 BNC1Q01954 994 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 DMTNQ08495 405 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 SLBPQ14493 270 aaKnown RBP eCLIP17.94■□□□□ 0.46
CLN3-206ENST00000360019 TEAD4Q15561 434 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 KIF19Q2TAC6 998 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 C6orf136Q5SQH8 315 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 ADNP2Q6IQ32 1131 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 OGFOD2Q6N063 350 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 BMP8AQ7Z5Y6 402 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 C17orf64Q86WR6 236 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 HOMEZQ8IX15 550 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 RNF175Q8N4F7 328 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 EFCAB11Q9BUY7 163 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 ACPTQ9BZG2 426 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 CUEDC1Q9NWM3 386 aaPredicted RBP17.94■□□□□ 0.46
CLN3-206ENST00000360019 OR6C2Q9NZP2 312 aa17.94■□□□□ 0.46
CLN3-206ENST00000360019 YY2O15391 372 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 AQP9O43315 295 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 CD1EP15812 388 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 MEF2AQ02078 507 aaPredicted RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms