RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PGRMC2O15173 223 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 SLC28A2O43868 658 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 AKAP3O75969 853 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 ZBTB11O95625 1053 aaPredicted RBP6.85□□□□□ -1.31
NUP54-215ENST00000514313 C9P02748 559 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 P4HA1P13674 534 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 EPORP19235 508 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 LINC00205P59089 165 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 KIAA1024LP59773 190 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 RASGEF1BQ0VAM2 473 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 CBX3Q13185 183 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 NONOQ15233 471 aaKnown RBP eCLIP6.85□□□□□ -1.31
NUP54-215ENST00000514313 RPS6KA1Q15418 735 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 HFEQ30201 348 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 FUT11Q495W5 492 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 CNTN4Q8IWV2 1026 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 PEX5LQ8IYB4 626 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 NDUFAF2Q8N183 169 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 IQCF1Q8N6M8 205 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 AMER3Q8N944 861 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 OR10Q1Q8NGQ4 319 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 OLIG1Q8TAK6 271 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 ST7LQ8TDW4 575 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 RTP4Q96DX8 246 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 FCRL4Q96PJ5 515 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 RTP3Q9BQQ7 232 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 TM6SF1Q9BZW5 370 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 RNF7Q9UBF6 113 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 MOSPD1Q9UJG1 213 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 TRIM17Q9Y577 477 aa6.85□□□□□ -1.31
NUP54-215ENST00000514313 SAA2-SAA4A0A096LPE2 208 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 A0A1W2PPI3 338 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 ASPDHA6ND91 283 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 SYNGR3O43761 229 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 ZBTB14O43829 449 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 SNX3O60493 162 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 CTSVO60911 334 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 GLCEO94923 617 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 STAG3L1P0CL83 205 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 C8orf89P0DMQ9 161 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 CTNNB1P35222 781 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 NKX2-1P43699 371 aaPredicted RBP6.84□□□□□ -1.31
NUP54-215ENST00000514313 BPIFB3P59826 476 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 LTBQ06643 244 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 KIR2DS3Q14952 304 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 ODF4Q2M2E3 257 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.84□□□□□ -1.31
NUP54-215ENST00000514313 CYP4A22Q5TCH4 519 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 FAM166AQ6J272 317 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 KCTD8Q6ZWB6 473 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 SLC9B2Q86UD5 537 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 AMIGO1Q86WK6 493 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 AQP12AQ8IXF9 295 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 ZNF619Q8N2I2 560 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 OR2T12Q8NG77 320 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 GRHL3Q8TE85 626 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 ZNF473Q8WTR7 871 aaKnown RBP6.84□□□□□ -1.31
NUP54-215ENST00000514313 ZNF479Q96JC4 524 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 FKRPQ9H9S5 495 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 RNPEPL1Q9HAU8 725 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 SPHK1Q9NYA1 384 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 FBXW2Q9UKT8 454 aa6.84□□□□□ -1.31
NUP54-215ENST00000514313 GTPBP10A4D1E9 387 aaKnown RBP6.83□□□□□ -1.32
NUP54-215ENST00000514313 MYMKA6NI61 221 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 ARPC2O15144 300 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 VCLP18206 1134 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 SERPINB6P35237 376 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 IL15P40933 162 aaPredicted RBP6.83□□□□□ -1.32
NUP54-215ENST00000514313 NPBWR1P48145 328 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 B3GALT5-AS1P59052 145 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 LCE5AQ5TCM9 118 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 FAM46CQ5VWP2 391 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 UNQ6126/PRO20091Q6UXV3 157 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 IL17RELQ6ZVW7 336 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 CDK20Q8IZL9 346 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 LGI2Q8N0V4 545 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 OR1J1Q8NGS3 322 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 OSBPL8Q9BZF1 889 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 PHPT1Q9NRX4 125 aaPredicted RBP6.83□□□□□ -1.32
NUP54-215ENST00000514313 P4HTMQ9NXG6 502 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 SLC7A7Q9UM01 511 aa6.83□□□□□ -1.32
NUP54-215ENST00000514313 C13orf42A0A1B0GVH6 325 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 PRSS46E5RG02 174 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 F8VVB4 439 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 F8VWA3 439 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 VEGFDO43915 354 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 IGHV4-39P01824 125 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 SERPING1P05155 500 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 EPHA2P29317 976 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 NT5C2P49902 561 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 VAMP7P51809 220 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 ARF5P84085 180 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 SGCBQ16585 318 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 AARDQ4LEZ3 155 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 PRAMEF8Q5VWM4 474 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 CNSTQ6PJW8 725 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 ANKRD33Q7Z3H0 272 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 ZNF554Q86TJ5 538 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 RTN4RL2Q86UN3 420 aa6.82□□□□□ -1.32
NUP54-215ENST00000514313 KIAA0895Q8NCT3 520 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms