RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	MED16	Q9Y2X0	877 aa		10.66	□□□□□ -0.7
DDB1-222	ENST00000543627	PSAT1	Q9Y617	370 aa		10.66	□□□□□ -0.7
DDB1-222	ENST00000543627	MRPS18B	Q9Y676	258 aa	Known RBP	10.66	□□□□□ -0.7
DDB1-222	ENST00000543627	SDK2	Q58EX2	2172 aa		10.66	□□□□□ -0.7
DDB1-222	ENST00000543627	ZFHX4	Q86UP3	3567 aa		10.66	□□□□□ -0.7
DDB1-222	ENST00000543627		E7EQ34	232 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627		E7ESA3	106 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627		K7ENP7	123 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	EIF3H	O15372	352 aa	Known RBP eCLIP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	PSIP1	O75475	530 aa	Known RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	OR2B3	O76000	313 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	MT-ND3	P03897	115 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	KLK3	P07288	261 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	CBSL	P0DN79	551 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	ENO3	P13929	434 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	WT1	P19544	449 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	HIST1H2AD	P20671	130 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	ALAS2	P22557	587 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	ATP5D	P30049	168 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	CBS	P35520	551 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	ITGA1	P56199	1179 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	IL2	P60568	153 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	ZIC1	Q15915	447 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	SLC5A12	Q1EHB4	618 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	C1orf189	Q5VU69	101 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	FAM45BP	Q6NSW5	357 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	INO80C	Q6PI98	192 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	FIGLA	Q6QHK4	219 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	ZDHHC24	Q6UX98	284 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	CYHR1	Q6ZMK1	362 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	ZNF572	Q7Z3I7	529 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	BPHL	Q86WA6	291 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	CNTN4	Q8IWV2	1026 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	PPM1N	Q8N819	430 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	NOA1	Q8NC60	698 aa	Known RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	FAM45A	Q8TCE6	357 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	MED8	Q96G25	268 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	HIST1H2AH	Q96KK5	128 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	HIST1H2AJ	Q99878	128 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	H2AFJ	Q9BTM1	129 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	PITPNM3	Q9BZ71	974 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	SMYD2	Q9NRG4	433 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	STARD5	Q9NSY2	213 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	SEMA5B	Q9P283	1151 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	NDOR1	Q9UHB4	597 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	IL17B	Q9UHF5	180 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	BTRC	Q9Y297	605 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	TMEM184B	Q9Y519	407 aa	Predicted RBP	10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	CFAP47	Q6ZTR5	3102 aa		10.65	□□□□□ -0.7
DDB1-222	ENST00000543627	CHD6	Q8TD26	2715 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627		A0A0J9YVX5	310 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	FAM95C	A0A1B0GW59	222 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	CXorf49	A8MYA2	514 aa	Predicted RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	NKX2-8	O15522	239 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ZNF749	O43361	778 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	HCRTR1	O43613	425 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	CPNE3	O75131	537 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	GUCA1C	O95843	209 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	DLGAP3	O95886	979 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	EIF2S1	P05198	315 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	CTSB	P07858	339 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	CMPK1	P30085	196 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	PNLIPRP1	P54315	467 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	YBX1	P67809	324 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	TIAL1	Q01085	375 aa	Known RBP eCLIP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ABHD18	Q0P651	414 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ERV3-1	Q14264	604 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	GBX1	Q14549	363 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ZNF460	Q14592	562 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	UAP1	Q16222	522 aa	Predicted RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	NEK10	Q6ZWH5	1172 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	MCAT	Q8IVS2	390 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	CARF	Q8N187	725 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	MMGT1	Q8N4V1	131 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ZNF655	Q8N720	491 aa	Predicted RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	CEP112	Q8N8E3	955 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	FLVCR1-AS1	Q8TAF5	88 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	MCOLN3	Q8TDD5	553 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	DENND1A	Q8TEH3	1009 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	FBF1	Q8TES7	1133 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ASB11	Q8WXH4	323 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	SMPDL3A	Q92484	453 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	OLFM1	Q99784	485 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	MENT	Q9BUN1	341 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	UNK	Q9C0B0	810 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ATG10	Q9H0Y0	220 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ACTR5	Q9H9F9	607 aa	Predicted RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	MRPS30	Q9NP92	439 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	LHX9	Q9NQ69	397 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	NSMCE4A	Q9NXX6	385 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	UTP6	Q9NYH9	597 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	MOCS1	Q9NZB8	636 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	SPATA7	Q9P0W8	599 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	MTRF1L	Q9UGC7	380 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	TAC3	Q9UHF0	121 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	DMGDH	Q9UI17	866 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	ADAMTS6	Q9UKP5	1117 aa		10.64	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms