RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	PIG1	Q06216	648 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	FKS1	P38631	1876 aa	Known RBP	2.83	□□□□□ -1.96
UBP1	YDL122W	TIF1	P10081	395 aa	Known RBP	2.82	□□□□□ -1.96
UBP1	YDL122W	MSD1	P15179	658 aa	Known RBP	2.82	□□□□□ -1.96
UBP1	YDL122W	ESS1	P22696	170 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	KIP2	P28743	706 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	MGM1	P32266	881 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	YGR125W	P53273	1036 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	YBL036C	P38197	257 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	MMF1	P40185	145 aa	Known RBP	2.82	□□□□□ -1.96
UBP1	YDL122W	APL6	P46682	809 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	MPP10	P47083	593 aa	Known RBP	2.82	□□□□□ -1.96
UBP1	YDL122W	IRC4	Q03036	179 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	EMI2	Q04409	500 aa	Known RBP	2.82	□□□□□ -1.96
UBP1	YDL122W	PCL8	Q08966	492 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	YDR461C-A	Q2V2P7	80 aa		2.82	□□□□□ -1.96
UBP1	YDL122W	LCB1	P25045	558 aa	Known RBP	2.81	□□□□□ -1.96
UBP1	YDL122W	VAC17	P25591	423 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	FUB1	P25659	250 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	CDC3	P32457	520 aa	Known RBP	2.81	□□□□□ -1.96
UBP1	YDL122W	SMY2	P32909	740 aa	Known RBP	2.81	□□□□□ -1.96
UBP1	YDL122W	NOP2	P40991	618 aa	Known RBP	2.81	□□□□□ -1.96
UBP1	YDL122W	SGM1	P47166	707 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	UBX5	Q06682	500 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	RPP0	P05317	312 aa	Known RBP	2.81	□□□□□ -1.96
UBP1	YDL122W	YJU3	P28321	313 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	TTI1	P36097	1038 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	YPT35	P38815	214 aa	Known RBP	2.81	□□□□□ -1.96
UBP1	YDL122W	IOC4	Q04213	475 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	TOS4	Q06266	489 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	PEX19	Q07418	342 aa		2.81	□□□□□ -1.96
UBP1	YDL122W	KAR2	P16474	682 aa	Known RBP	2.8	□□□□□ -1.96
UBP1	YDL122W	KTR1	P27810	393 aa	Known RBP	2.8	□□□□□ -1.96
UBP1	YDL122W	YBL028C	P38202	106 aa		2.8	□□□□□ -1.96
UBP1	YDL122W	SAF1	P38352	637 aa		2.8	□□□□□ -1.96
UBP1	YDL122W	YGR266W	P53326	701 aa		2.8	□□□□□ -1.96
UBP1	YDL122W	DUS4	Q06063	367 aa		2.8	□□□□□ -1.96
UBP1	YDL122W	THI3	Q07471	609 aa		2.8	□□□□□ -1.96
UBP1	YDL122W	SUP35	P05453	685 aa	Known RBP	2.8	□□□□□ -1.96
UBP1	YDL122W	AKL1	P38080	1108 aa	Known RBP	2.8	□□□□□ -1.96
UBP1	YDL122W	MOB1	P40484	314 aa		2.8	□□□□□ -1.96
UBP1	YDL122W	PKH1	Q03407	766 aa		2.8	□□□□□ -1.96
UBP1	YDL122W	SSL1	Q04673	461 aa	Predicted RBP	2.8	□□□□□ -1.96
UBP1	YDL122W	YLR346C	Q06139	101 aa		2.8	□□□□□ -1.96
UBP1	YDL122W	HOM2	P13663	365 aa	Known RBP	2.79	□□□□□ -1.96
UBP1	YDL122W	BIO2	P32451	375 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	DUR3	P33413	735 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	SEG2	P34250	1132 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	POL5	P39985	1022 aa	Known RBP	2.79	□□□□□ -1.96
UBP1	YDL122W	YFH7	P43591	353 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	NUP85	P46673	744 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	PKH3	Q03306	898 aa	Predicted RBP	2.79	□□□□□ -1.96
UBP1	YDL122W	ISA1	Q07821	250 aa	Predicted RBP	2.79	□□□□□ -1.96
UBP1	YDL122W	NOB1	Q08444	459 aa	Known RBP	2.79	□□□□□ -1.96
UBP1	YDL122W	MSB2	P32334	1306 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	POX1	P13711	748 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	HEM3	P28789	327 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	PEX2	P32800	271 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	SSF1	P38789	453 aa	Predicted RBP	2.79	□□□□□ -1.96
UBP1	YDL122W	HPF1	Q05164	967 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	HIM1	Q06674	414 aa		2.79	□□□□□ -1.96
UBP1	YDL122W	MSC6	Q08818	692 aa	Known RBP	2.79	□□□□□ -1.96
UBP1	YDL122W	CAD1	P24813	409 aa	Known RBP	2.78	□□□□□ -1.96
UBP1	YDL122W	SRP40	P32583	406 aa	Predicted RBP	2.78	□□□□□ -1.96
UBP1	YDL122W	TIF4631	P39935	952 aa	Known RBP	2.78	□□□□□ -1.96
UBP1	YDL122W	YNL108C	P53929	270 aa		2.78	□□□□□ -1.96
UBP1	YDL122W	VPS72	Q03388	795 aa		2.78	□□□□□ -1.96
UBP1	YDL122W	TUB2	P02557	457 aa	Known RBP	2.78	□□□□□ -1.97
UBP1	YDL122W	RRN6	P32786	894 aa		2.78	□□□□□ -1.97
UBP1	YDL122W	NGR1	P32831	672 aa	Known RBP	2.78	□□□□□ -1.97
UBP1	YDL122W	NTH2	P35172	780 aa		2.78	□□□□□ -1.97
UBP1	YDL122W	GLY1	P37303	387 aa	Known RBP	2.78	□□□□□ -1.97
UBP1	YDL122W	CST26	P38226	397 aa		2.78	□□□□□ -1.97
UBP1	YDL122W	ALD5	P40047	520 aa	Known RBP	2.78	□□□□□ -1.97
UBP1	YDL122W	EMW1	P42842	904 aa	Known RBP	2.78	□□□□□ -1.97
UBP1	YDL122W	FCP1	Q03254	732 aa		2.78	□□□□□ -1.97
UBP1	YDL122W	YMR206W	Q03695	313 aa		2.78	□□□□□ -1.97
UBP1	YDL122W	VPS64	Q03944	604 aa		2.78	□□□□□ -1.97
UBP1	YDL122W	SGO1	Q08490	590 aa		2.78	□□□□□ -1.97
UBP1	YDL122W	MEX67	Q99257	599 aa	Known RBP	2.78	□□□□□ -1.97
UBP1	YDL122W	MOT1	P32333	1867 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	PCK1	P10963	549 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	PTP1	P25044	335 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	SEC8	P32855	1065 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	CHS7	P38843	316 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	BUD16	P39988	312 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	AZR1	P50080	613 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	ALD6	P54115	500 aa	Known RBP	2.77	□□□□□ -1.97
UBP1	YDL122W	OPT2	Q06593	877 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	RRD2	Q12461	358 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	MCM4	P30665	933 aa	Known RBP	2.77	□□□□□ -1.97
UBP1	YDL122W	APN2	P38207	520 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	RIM4	P38741	713 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	FIG4	P42837	879 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	YML037C	Q03703	340 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	BUL2	Q03758	920 aa	Known RBP	2.77	□□□□□ -1.97
UBP1	YDL122W	NSE1	Q07913	336 aa		2.77	□□□□□ -1.97
UBP1	YDL122W	DUR1,2	P32528	1835 aa	Known RBP	2.76	□□□□□ -1.97
UBP1	YDL122W	SIS2	P36024	562 aa		2.76	□□□□□ -1.97
UBP1	YDL122W	OPT1	P40897	799 aa		2.76	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 67.7 ms