RNA–Protein interactions for RNA: ENST00000641587.1

PHGDH-222, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-222	ENST00000641587	PXDNL	A1KZ92	1463 aa		13.87	□□□□□ -0.19
PHGDH-222	ENST00000641587	KIF13B	Q9NQT8	1826 aa		13.86	□□□□□ -0.19
PHGDH-222	ENST00000641587	HSPA6	P17066	643 aa		13.86	□□□□□ -0.19
PHGDH-222	ENST00000641587	ATP6V1A	P38606	617 aa		13.86	□□□□□ -0.19
PHGDH-222	ENST00000641587	ATG3	Q9NT62	314 aa		13.86	□□□□□ -0.19
PHGDH-222	ENST00000641587	WASHC2A	Q641Q2	1341 aa		13.86	□□□□□ -0.19
PHGDH-222	ENST00000641587	KDR	P35968	1356 aa		13.85	□□□□□ -0.19
PHGDH-222	ENST00000641587	KIF3C	O14782	793 aa		13.85	□□□□□ -0.19
PHGDH-222	ENST00000641587	MMP10	P09238	476 aa		13.85	□□□□□ -0.19
PHGDH-222	ENST00000641587	CDCA8	Q53HL2	280 aa		13.85	□□□□□ -0.19
PHGDH-222	ENST00000641587	SLC4A9	Q96Q91	983 aa		13.85	□□□□□ -0.19
PHGDH-222	ENST00000641587	HMGB2	P26583	209 aa	Known RBP	13.84	□□□□□ -0.19
PHGDH-222	ENST00000641587	TNNT2	P45379	298 aa	Predicted RBP	13.84	□□□□□ -0.19
PHGDH-222	ENST00000641587	EIF4A2	Q14240	407 aa	Known RBP	13.84	□□□□□ -0.19
PHGDH-222	ENST00000641587	IFNL2	Q8IZJ0	200 aa		13.84	□□□□□ -0.19
PHGDH-222	ENST00000641587	POLK	Q9UBT6	870 aa		13.84	□□□□□ -0.19
PHGDH-222	ENST00000641587	COL5A3	P25940	1745 aa	Predicted RBP	13.84	□□□□□ -0.19
PHGDH-222	ENST00000641587	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
PHGDH-222	ENST00000641587	C4A	P0C0L4	1744 aa		13.83	□□□□□ -0.2
PHGDH-222	ENST00000641587	POLR3GL	Q9BT43	218 aa		13.82	□□□□□ -0.2
PHGDH-222	ENST00000641587	MYH14	Q7Z406	1995 aa	Known RBP	13.82	□□□□□ -0.2
PHGDH-222	ENST00000641587	C10orf71	Q711Q0	1435 aa		13.81	□□□□□ -0.2
PHGDH-222	ENST00000641587	BRCA1	P38398	1863 aa	Known RBP	13.81	□□□□□ -0.2
PHGDH-222	ENST00000641587		A0A0G2JLW4	131 aa		13.81	□□□□□ -0.2
PHGDH-222	ENST00000641587	RBM42	Q9BTD8	480 aa	Known RBP	13.81	□□□□□ -0.2
PHGDH-222	ENST00000641587	BCS1L	Q9Y276	419 aa		13.81	□□□□□ -0.2
PHGDH-222	ENST00000641587	KDM6A	O15550	1401 aa	Predicted RBP	13.81	□□□□□ -0.2
PHGDH-222	ENST00000641587	RTCB	Q9Y3I0	505 aa	Known RBP	13.8	□□□□□ -0.2
PHGDH-222	ENST00000641587	ZNF831	Q5JPB2	1677 aa		13.79	□□□□□ -0.2
PHGDH-222	ENST00000641587	TRAPPC3L	Q5T215	181 aa		13.79	□□□□□ -0.2
PHGDH-222	ENST00000641587	ARHGEF1	Q92888	912 aa	Known RBP	13.79	□□□□□ -0.2
PHGDH-222	ENST00000641587	GYS1	P13807	737 aa		13.78	□□□□□ -0.2
PHGDH-222	ENST00000641587	DPEP1	P16444	411 aa		13.78	□□□□□ -0.2
PHGDH-222	ENST00000641587	ARHGAP27	Q6ZUM4	889 aa		13.77	□□□□□ -0.21
PHGDH-222	ENST00000641587	CNTNAP4	Q9C0A0	1308 aa		13.77	□□□□□ -0.21
PHGDH-222	ENST00000641587	NMRK2	Q9NPI5	230 aa		13.77	□□□□□ -0.21
PHGDH-222	ENST00000641587	TJP1	Q07157	1748 aa		13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	ERVV-2	B6SEH9	535 aa		13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	FCHSD2	O94868	740 aa		13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	TGFB2	P61812	414 aa		13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	AEBP1	Q8IUX7	1158 aa		13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	NLGN1	Q8N2Q7	840 aa		13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	CCDC87	Q9NVE4	849 aa		13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	SRP68	Q9UHB9	627 aa	Known RBP	13.76	□□□□□ -0.21
PHGDH-222	ENST00000641587	PTCD1	O75127	700 aa	Known RBP	13.75	□□□□□ -0.21
PHGDH-222	ENST00000641587	RPS6KA4	O75676	772 aa		13.75	□□□□□ -0.21
PHGDH-222	ENST00000641587	RFC4	P35249	363 aa		13.75	□□□□□ -0.21
PHGDH-222	ENST00000641587	DCAF5	Q96JK2	942 aa		13.75	□□□□□ -0.21
PHGDH-222	ENST00000641587	ARFGEF1	Q9Y6D6	1849 aa		13.75	□□□□□ -0.21
PHGDH-222	ENST00000641587	ADRA2B	P18089	450 aa		13.74	□□□□□ -0.21
PHGDH-222	ENST00000641587	KCNA3	P22001	575 aa		13.74	□□□□□ -0.21
PHGDH-222	ENST00000641587	CABP4	P57796	275 aa		13.74	□□□□□ -0.21
PHGDH-222	ENST00000641587	RC3H1	Q5TC82	1133 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-222	ENST00000641587	PARP3	Q9Y6F1	533 aa		13.74	□□□□□ -0.21
PHGDH-222	ENST00000641587	PLEKHG2	Q9H7P9	1386 aa		13.73	□□□□□ -0.21
PHGDH-222	ENST00000641587	ADAMTS7	Q9UKP4	1686 aa		13.73	□□□□□ -0.21
PHGDH-222	ENST00000641587	TOMM70	O94826	608 aa		13.73	□□□□□ -0.21
PHGDH-222	ENST00000641587	CRKL	P46109	303 aa	Known RBP	13.73	□□□□□ -0.21
PHGDH-222	ENST00000641587	DDR1	Q08345	913 aa		13.73	□□□□□ -0.21
PHGDH-222	ENST00000641587	FKBP8	Q14318	412 aa		13.73	□□□□□ -0.21
PHGDH-222	ENST00000641587	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.73	□□□□□ -0.21
PHGDH-222	ENST00000641587	WDR90	Q96KV7	1748 aa		13.73	□□□□□ -0.21
PHGDH-222	ENST00000641587	HSP90AB1	P08238	724 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-222	ENST00000641587	APLP1	P51693	650 aa		13.72	□□□□□ -0.21
PHGDH-222	ENST00000641587	HTRA3	P83110	453 aa		13.72	□□□□□ -0.21
PHGDH-222	ENST00000641587	C9orf131	Q5VYM1	1079 aa		13.72	□□□□□ -0.21
PHGDH-222	ENST00000641587	KCP	Q6ZWJ8	1503 aa		13.72	□□□□□ -0.21
PHGDH-222	ENST00000641587	SCN11A	Q9UI33	1791 aa		13.71	□□□□□ -0.21
PHGDH-222	ENST00000641587	USP42	Q9H9J4	1324 aa	Known RBP	13.71	□□□□□ -0.21
PHGDH-222	ENST00000641587	MTHFS	P49914	203 aa		13.71	□□□□□ -0.21
PHGDH-222	ENST00000641587	DNAJC5G	Q8N7S2	189 aa		13.71	□□□□□ -0.21
PHGDH-222	ENST00000641587	NFATC2IP	Q8NCF5	419 aa		13.71	□□□□□ -0.21
PHGDH-222	ENST00000641587	PANK3	Q9H999	370 aa		13.71	□□□□□ -0.21
PHGDH-222	ENST00000641587	CHRNA5	P30532	468 aa		13.7	□□□□□ -0.22
PHGDH-222	ENST00000641587	SBF1	O95248	1867 aa		13.7	□□□□□ -0.22
PHGDH-222	ENST00000641587	PCNT	O95613	3336 aa		13.69	□□□□□ -0.22
PHGDH-222	ENST00000641587	AMOT	Q4VCS5	1084 aa		13.69	□□□□□ -0.22
PHGDH-222	ENST00000641587	C1orf141	Q5JVX7	400 aa		13.69	□□□□□ -0.22
PHGDH-222	ENST00000641587	SULT6B1	Q6IMI4	303 aa		13.69	□□□□□ -0.22
PHGDH-222	ENST00000641587	PIM2	Q9P1W9	311 aa		13.69	□□□□□ -0.22
PHGDH-222	ENST00000641587	VIRMA	Q69YN4	1812 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-222	ENST00000641587	HSPA5	P11021	654 aa	Known RBP	13.68	□□□□□ -0.22
PHGDH-222	ENST00000641587	INTS5	Q6P9B9	1019 aa	Known RBP	13.68	□□□□□ -0.22
PHGDH-222	ENST00000641587	RNF181	Q9P0P0	153 aa		13.68	□□□□□ -0.22
PHGDH-222	ENST00000641587	AFDN	P55196	1824 aa	Known RBP	13.68	□□□□□ -0.22
PHGDH-222	ENST00000641587	POLRMT	O00411	1230 aa	Known RBP	13.67	□□□□□ -0.22
PHGDH-222	ENST00000641587	RASSF7	Q02833	373 aa		13.67	□□□□□ -0.22
PHGDH-222	ENST00000641587	DALRD3	Q5D0E6	543 aa	Known RBP	13.67	□□□□□ -0.22
PHGDH-222	ENST00000641587	DNAJC10	Q8IXB1	793 aa		13.67	□□□□□ -0.22
PHGDH-222	ENST00000641587	MORC1	Q86VD1	984 aa		13.66	□□□□□ -0.22
PHGDH-222	ENST00000641587	RBM46	Q8TBY0	533 aa	Known RBP	13.66	□□□□□ -0.22
PHGDH-222	ENST00000641587	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.66	□□□□□ -0.22
PHGDH-222	ENST00000641587	IL13	P35225	146 aa		13.65	□□□□□ -0.22
PHGDH-222	ENST00000641587	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.65	□□□□□ -0.22	7e-14	■■■■■ 63.8
PHGDH-222	ENST00000641587	SLC39A6	Q13433	755 aa		13.65	□□□□□ -0.22
PHGDH-222	ENST00000641587	USPL1	Q5W0Q7	1092 aa		13.65	□□□□□ -0.22
PHGDH-222	ENST00000641587	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.65	□□□□□ -0.22
PHGDH-222	ENST00000641587	RRAGC	Q9HB90	399 aa		13.65	□□□□□ -0.22
PHGDH-222	ENST00000641587	LGR6	Q9HBX8	967 aa		13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms