RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GPR25O00155 361 aa9.51□□□□□ -0.89
CD44-239ENST00000639002 SKIP12755 728 aa9.51□□□□□ -0.89
CD44-239ENST00000639002 GDF10P55107 478 aa9.51□□□□□ -0.89
CD44-239ENST00000639002 ZNF385CQ66K41 422 aaPredicted RBP9.51□□□□□ -0.89
CD44-239ENST00000639002 CLUAP1Q96AJ1 413 aa9.51□□□□□ -0.89
CD44-239ENST00000639002 F11P03951 625 aa9.5□□□□□ -0.89
CD44-239ENST00000639002 PPARGC1BQ86YN6 1023 aaKnown RBP9.5□□□□□ -0.89
CD44-239ENST00000639002 FNBP4Q8N3X1 1017 aaPredicted RBP9.5□□□□□ -0.89
CD44-239ENST00000639002 TMEM214Q6NUQ4 689 aaKnown RBP9.49□□□□□ -0.89
CD44-239ENST00000639002 NFATC2IPQ8NCF5 419 aa9.49□□□□□ -0.89
CD44-239ENST00000639002 GTPBP3Q969Y2 492 aaKnown RBP9.49□□□□□ -0.89
CD44-239ENST00000639002 TLR1Q15399 786 aa9.48□□□□□ -0.89
CD44-239ENST00000639002 HDGFL1Q5TGJ6 251 aa9.48□□□□□ -0.89
CD44-239ENST00000639002 WWC1Q8IX03 1113 aa9.48□□□□□ -0.89
CD44-239ENST00000639002 UCN2Q96RP3 112 aa9.48□□□□□ -0.89
CD44-239ENST00000639002 H7C1W4 665 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 ARHGEF15O94989 841 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 ADAMTS2O95450 1211 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 SMTNP53814 917 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 NCOA4Q13772 614 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 UBAP2LQ14157 1087 aaKnown RBP9.47□□□□□ -0.89
CD44-239ENST00000639002 ZNF295-AS1Q8N0V1 137 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 RHBDD1Q8TEB9 315 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 SLC4A9Q96Q91 983 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 GPAMQ9HCL2 828 aa9.47□□□□□ -0.89
CD44-239ENST00000639002 SRSF11Q05519 484 aaKnown RBP9.46□□□□□ -0.9
CD44-239ENST00000639002 EML3Q32P44 896 aa9.46□□□□□ -0.9
CD44-239ENST00000639002 GNASQ5JWF2 1037 aa9.46□□□□□ -0.9
CD44-239ENST00000639002 DEPDC4Q8N2C3 294 aa9.46□□□□□ -0.9
CD44-239ENST00000639002 NUCKS1Q9H1E3 243 aaKnown RBP9.46□□□□□ -0.9
CD44-239ENST00000639002 SERTAD1Q9UHV2 236 aa9.46□□□□□ -0.9
CD44-239ENST00000639002 USP3Q9Y6I4 520 aa9.46□□□□□ -0.9
CD44-239ENST00000639002 A0A1B0GTH6 734 aa9.45□□□□□ -0.9
CD44-239ENST00000639002 MSX1P28360 303 aa9.45□□□□□ -0.9
CD44-239ENST00000639002 LYPD4Q6UWN0 246 aa9.45□□□□□ -0.9
CD44-239ENST00000639002 TBC1D9Q6ZT07 1266 aa9.45□□□□□ -0.9
CD44-239ENST00000639002 ADAMTS8Q9UP79 889 aa9.45□□□□□ -0.9
CD44-239ENST00000639002 IQSEC3Q9UPP2 1182 aaPredicted RBP9.45□□□□□ -0.9
CD44-239ENST00000639002 USP17L5A8MUK1 530 aa9.44□□□□□ -0.9
CD44-239ENST00000639002 LZTS3O60299 673 aaPredicted RBP9.44□□□□□ -0.9
CD44-239ENST00000639002 GSK3AP49840 483 aa9.44□□□□□ -0.9
CD44-239ENST00000639002 GTF2IP78347 998 aa9.44□□□□□ -0.9
CD44-239ENST00000639002 MTFR1Q15390 333 aa9.44□□□□□ -0.9
CD44-239ENST00000639002 MBIPQ9NS73 344 aa9.44□□□□□ -0.9
CD44-239ENST00000639002 NOD1Q9Y239 953 aa9.44□□□□□ -0.9
CD44-239ENST00000639002 ZBTB7BO15156 539 aaPredicted RBP9.43□□□□□ -0.9
CD44-239ENST00000639002 RUBCNLQ9H714 662 aa9.43□□□□□ -0.9
CD44-239ENST00000639002 IGF1RP08069 1367 aa9.42□□□□□ -0.9
CD44-239ENST00000639002 A6NJY4 79 aa9.42□□□□□ -0.9
CD44-239ENST00000639002 GTF2E1P29083 439 aaPredicted RBP9.42□□□□□ -0.9
CD44-239ENST00000639002 FOXR1Q6PIV2 292 aa9.42□□□□□ -0.9
CD44-239ENST00000639002 SVOPQ8N4V2 548 aa9.42□□□□□ -0.9
CD44-239ENST00000639002 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.42□□□□□ -0.9
CD44-239ENST00000639002 CDK2AP1O14519 115 aa9.41□□□□□ -0.9
CD44-239ENST00000639002 CELA2BP08218 269 aaPredicted RBP9.41□□□□□ -0.9
CD44-239ENST00000639002 PLA2G4AP47712 749 aa9.41□□□□□ -0.9
CD44-239ENST00000639002 PROSER2Q86WR7 435 aaPredicted RBP9.41□□□□□ -0.9
CD44-239ENST00000639002 PLEKHM2Q8IWE5 1019 aa9.41□□□□□ -0.9
CD44-239ENST00000639002 ATP4AP20648 1035 aa9.4□□□□□ -0.9
CD44-239ENST00000639002 ZNF358Q9NW07 568 aa9.4□□□□□ -0.9
CD44-239ENST00000639002 KIAA1024Q9UPX6 916 aa9.4□□□□□ -0.9
CD44-239ENST00000639002 USP17L3A6NCW0 530 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 USP17L4A6NCW7 530 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 ATP9BO43861 1147 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 USP17L2Q6R6M4 530 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 USP17L1Q7RTZ2 530 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 TRERF1Q96PN7 1200 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 CFHR5Q9BXR6 569 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 NIFKQ9BYG3 293 aaKnown RBP9.39□□□□□ -0.91
CD44-239ENST00000639002 CRISPLD1Q9H336 500 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 NDFIP2Q9NV92 336 aa9.39□□□□□ -0.91
CD44-239ENST00000639002 DNAAF2Q9NVR5 837 aaKnown RBP9.39□□□□□ -0.91
CD44-239ENST00000639002 A6NJR5 290 aa9.38□□□□□ -0.91
CD44-239ENST00000639002 EPHA4P54764 986 aa9.38□□□□□ -0.91
CD44-239ENST00000639002 CLDN10P78369 228 aa9.38□□□□□ -0.91
CD44-239ENST00000639002 KCNMA1Q12791 1236 aa9.38□□□□□ -0.91
CD44-239ENST00000639002 ACDQ96AP0 544 aa9.38□□□□□ -0.91
CD44-239ENST00000639002 MX2P20592 715 aa9.37□□□□□ -0.91
CD44-239ENST00000639002 FOXK2Q01167 660 aa9.37□□□□□ -0.91
CD44-239ENST00000639002 LBRQ14739 615 aaKnown RBP9.37□□□□□ -0.91
CD44-239ENST00000639002 GLMNQ92990 594 aa9.37□□□□□ -0.91
CD44-239ENST00000639002 SCHIP1Q9P0W5 487 aaPredicted RBP9.37□□□□□ -0.91
CD44-239ENST00000639002 HCN2Q9UL51 889 aa9.37□□□□□ -0.91
CD44-239ENST00000639002 BACH1O14867 736 aa9.36□□□□□ -0.91
CD44-239ENST00000639002 BNIP3LO60238 219 aa9.36□□□□□ -0.91
CD44-239ENST00000639002 DKK1O94907 266 aa9.36□□□□□ -0.91
CD44-239ENST00000639002 CSB-PGBD3P0DP91 1061 aa9.36□□□□□ -0.91
CD44-239ENST00000639002 PGBD3Q8N328 593 aa9.36□□□□□ -0.91
CD44-239ENST00000639002 ZDHHC1Q8WTX9 485 aa9.36□□□□□ -0.91
CD44-239ENST00000639002 AIDAQ96BJ3 306 aa9.36□□□□□ -0.91
CD44-239ENST00000639002 PARP3Q9Y6F1 533 aa9.36□□□□□ -0.91
CD44-239ENST00000639002 PSME1Q06323 249 aa9.35□□□□□ -0.91
CD44-239ENST00000639002 TNS4Q8IZW8 715 aa9.35□□□□□ -0.91
CD44-239ENST00000639002 TFIP11Q9UBB9 837 aaKnown RBP9.35□□□□□ -0.91
CD44-239ENST00000639002 MKRN1Q9UHC7 482 aaKnown RBP9.35□□□□□ -0.91
CD44-239ENST00000639002 C2CD2LO14523 706 aa9.34□□□□□ -0.91
CD44-239ENST00000639002 EFHC2Q5JST6 749 aa9.34□□□□□ -0.91
CD44-239ENST00000639002 CCDC102BQ68D86 513 aa9.34□□□□□ -0.91
CD44-239ENST00000639002 TRIM50Q86XT4 487 aa9.34□□□□□ -0.91
CD44-239ENST00000639002 C1orf216Q8TAB5 229 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms