RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ADAMTS2O95450 1211 aa21.51■■□□□ 1.03
CLN3-252ENST00000636907 EIF4A1P60842 406 aaKnown RBP21.51■■□□□ 1.03
CLN3-252ENST00000636907 ZCRB1Q8TBF4 217 aaKnown RBP21.51■■□□□ 1.03
CLN3-252ENST00000636907 CERKQ8TCT0 537 aa21.51■■□□□ 1.03
CLN3-252ENST00000636907 PLCH1Q4KWH8 1693 aa21.5■■□□□ 1.03
CLN3-252ENST00000636907 AAMPQ13685 434 aa21.5■■□□□ 1.03
CLN3-252ENST00000636907 ITPRIPQ8IWB1 547 aa21.5■■□□□ 1.03
CLN3-252ENST00000636907 USP35Q9P2H5 1018 aa21.5■■□□□ 1.03
CLN3-252ENST00000636907 PCDH11XQ9BZA7 1347 aa21.49■■□□□ 1.03
CLN3-252ENST00000636907 PCDH11YQ9BZA8 1340 aa21.49■■□□□ 1.03
CLN3-252ENST00000636907 HSP90AB1P08238 724 aaKnown RBP21.49■■□□□ 1.03
CLN3-252ENST00000636907 DCAF5Q96JK2 942 aa21.49■■□□□ 1.03
CLN3-252ENST00000636907 NUTM2BA6NNL0 878 aaPredicted RBP21.48■■□□□ 1.03
CLN3-252ENST00000636907 NUTM2EB1AL46 878 aaPredicted RBP21.48■■□□□ 1.03
CLN3-252ENST00000636907 SLC4A2P04920 1241 aa21.48■■□□□ 1.03
CLN3-252ENST00000636907 NUTM2AQ8IVF1 878 aaPredicted RBP21.48■■□□□ 1.03
CLN3-252ENST00000636907 SHANK3Q9BYB0 1731 aa21.48■■□□□ 1.03
CLN3-252ENST00000636907 API5Q9BZZ5 524 aaKnown RBP21.48■■□□□ 1.03
CLN3-252ENST00000636907 SLC52A2Q9HAB3 445 aa21.48■■□□□ 1.03
CLN3-252ENST00000636907 DDX19BQ9UMR2 479 aa21.48■■□□□ 1.03
CLN3-252ENST00000636907 MRC1P22897 1456 aa21.48■■□□□ 1.03
CLN3-252ENST00000636907 KDM2BQ8NHM5 1336 aa21.48■■□□□ 1.03
CLN3-252ENST00000636907 ABCC4O15439 1325 aa21.47■■□□□ 1.03
CLN3-252ENST00000636907 CCDC30Q5VVM6 783 aa21.47■■□□□ 1.03
CLN3-252ENST00000636907 NRAPQ86VF7 1730 aa21.46■■□□□ 1.03
CLN3-252ENST00000636907 RGS12O14924 1447 aa21.45■■□□□ 1.02
CLN3-252ENST00000636907 NFATC2IPQ8NCF5 419 aa21.45■■□□□ 1.02
CLN3-252ENST00000636907 NECTIN2Q92692 538 aa21.45■■□□□ 1.02
CLN3-252ENST00000636907 STK31Q9BXU1 1019 aa21.45■■□□□ 1.02
CLN3-252ENST00000636907 PTPRCP08575 1304 aa21.45■■□□□ 1.02
CLN3-252ENST00000636907 HOXB7P09629 217 aa21.44■■□□□ 1.02
CLN3-252ENST00000636907 CENPQQ7L2Z9 268 aaPredicted RBP21.44■■□□□ 1.02
CLN3-252ENST00000636907 G2E3Q7L622 706 aa21.44■■□□□ 1.02
CLN3-252ENST00000636907 DISP2A7MBM2 1401 aa21.44■■□□□ 1.02
CLN3-252ENST00000636907 HDGFL1Q5TGJ6 251 aa21.44■■□□□ 1.02
CLN3-252ENST00000636907 JCADQ9P266 1359 aa21.43■■□□□ 1.02
CLN3-252ENST00000636907 HEG1Q9ULI3 1381 aa21.43■■□□□ 1.02
CLN3-252ENST00000636907 PCDHB15Q9Y5E8 787 aa21.43■■□□□ 1.02
CLN3-252ENST00000636907 NKX1-1Q15270 411 aaPredicted RBP21.42■■□□□ 1.02
CLN3-252ENST00000636907 DDX54Q8TDD1 881 aaKnown RBP21.42■■□□□ 1.02
CLN3-252ENST00000636907 CABP4P57796 275 aa21.41■■□□□ 1.02
CLN3-252ENST00000636907 SLC39A6Q13433 755 aa21.41■■□□□ 1.02
CLN3-252ENST00000636907 ZNF790Q6PG37 636 aa21.41■■□□□ 1.02
CLN3-252ENST00000636907 IGHDP01880 384 aa21.4■■□□□ 1.02
CLN3-252ENST00000636907 EIF2S2P20042 333 aaKnown RBP21.4■■□□□ 1.02
CLN3-252ENST00000636907 ZBTB40Q9NUA8 1239 aa21.4■■□□□ 1.02
CLN3-252ENST00000636907 WNK3Q9BYP7 1800 aa21.4■■□□□ 1.02
CLN3-252ENST00000636907 GIGYF1O75420 1035 aaPredicted RBP21.4■■□□□ 1.02
CLN3-252ENST00000636907 NWD2Q9ULI1 1742 aa21.4■■□□□ 1.02
CLN3-252ENST00000636907 SLIT2O94813 1529 aa21.4■■□□□ 1.02
CLN3-252ENST00000636907 CACNA1FO60840 1977 aa21.39■■□□□ 1.01
CLN3-252ENST00000636907 ZBTB7BO15156 539 aaPredicted RBP21.38■■□□□ 1.01
CLN3-252ENST00000636907 FLIIQ13045 1269 aa21.38■■□□□ 1.01
CLN3-252ENST00000636907 INTS3Q68E01 1043 aaKnown RBP21.37■■□□□ 1.01
CLN3-252ENST00000636907 CHMP4AQ9BY43 222 aa21.37■■□□□ 1.01
CLN3-252ENST00000636907 PRAMEF22A3QJZ6 481 aa21.37■■□□□ 1.01
CLN3-252ENST00000636907 ERVV-2B6SEH9 535 aa21.37■■□□□ 1.01
CLN3-252ENST00000636907 SPATA31A1Q5TZJ5 1347 aa21.37■■□□□ 1.01
CLN3-252ENST00000636907 CHMP4BQ9H444 224 aaKnown RBP21.36■■□□□ 1.01
CLN3-252ENST00000636907 CHPF2Q9P2E5 772 aa21.36■■□□□ 1.01
CLN3-252ENST00000636907 TOGARAM1Q9Y4F4 1720 aa21.36■■□□□ 1.01
CLN3-252ENST00000636907 TTC5Q8N0Z6 440 aa21.35■■□□□ 1.01
CLN3-252ENST00000636907 C5P01031 1676 aa21.35■■□□□ 1.01
CLN3-252ENST00000636907 F6X3S4 739 aa21.34■■□□□ 1.01
CLN3-252ENST00000636907 FKBP5Q13451 457 aaPredicted RBP21.34■■□□□ 1.01
CLN3-252ENST00000636907 ZNF496Q96IT1 587 aaPredicted RBP21.34■■□□□ 1.01
CLN3-252ENST00000636907 PHAXQ9H814 394 aaKnown RBP21.34■■□□□ 1.01
CLN3-252ENST00000636907 THRAP3Q9Y2W1 955 aaKnown RBP21.34■■□□□ 1.01
CLN3-252ENST00000636907 SPATA31A5Q5VU36 1347 aa21.33■■□□□ 1.01
CLN3-252ENST00000636907 SPATA31A7Q8IWB4 1347 aa21.33■■□□□ 1.01
CLN3-252ENST00000636907 SKAP1Q86WV1 359 aa21.33■■□□□ 1
CLN3-252ENST00000636907 TSHZ2Q9NRE2 1034 aa21.33■■□□□ 1
CLN3-252ENST00000636907 SPATA31A6Q5VVP1 1343 aa21.32■■□□□ 1
CLN3-252ENST00000636907 RWDD1Q9H446 243 aaPredicted RBP21.32■■□□□ 1
CLN3-252ENST00000636907 TNS2Q63HR2 1409 aa21.32■■□□□ 1
CLN3-252ENST00000636907 LRP6O75581 1613 aa21.32■■□□□ 1
CLN3-252ENST00000636907 PAPPAQ13219 1627 aa21.32■■□□□ 1
CLN3-252ENST00000636907 EXOC5O00471 708 aa21.31■■□□□ 1
CLN3-252ENST00000636907 C8orf37Q96NL8 207 aa21.31■■□□□ 1
CLN3-252ENST00000636907 FMNL2Q96PY5 1086 aa21.31■■□□□ 1
CLN3-252ENST00000636907 CDCA7Q9BWT1 371 aaPredicted RBP21.31■■□□□ 1
CLN3-252ENST00000636907 DBF4Q9UBU7 674 aaPredicted RBP21.31■■□□□ 1
CLN3-252ENST00000636907 GLI3P10071 1580 aa21.31■■□□□ 1
CLN3-252ENST00000636907 ANXA1P04083 346 aa21.31■■□□□ 1
CLN3-252ENST00000636907 HSPA1LP34931 641 aa21.31■■□□□ 1
CLN3-252ENST00000636907 SLC4A10Q6U841 1118 aa21.31■■□□□ 1
CLN3-252ENST00000636907 UNC5CLQ8IV45 518 aa21.31■■□□□ 1
CLN3-252ENST00000636907 CCT4P50991 539 aaKnown RBP21.3■■□□□ 1
CLN3-252ENST00000636907 NGLY1Q96IV0 654 aa21.3■■□□□ 1
CLN3-252ENST00000636907 C1orf115Q9H7X2 142 aa21.3■■□□□ 1
CLN3-252ENST00000636907 SNRPA1P09661 255 aaKnown RBP21.29■■□□□ 1
CLN3-252ENST00000636907 HDAC1Q13547 482 aaPredicted RBP21.29■■□□□ 1
CLN3-252ENST00000636907 CCDC9Q9Y3X0 531 aaKnown RBP21.29■■□□□ 1
CLN3-252ENST00000636907 UBR2Q8IWV8 1755 aa21.29■■□□□ 1
CLN3-252ENST00000636907 BCL9LQ86UU0 1499 aa21.29■■□□□ 1
CLN3-252ENST00000636907 PROSER3Q2NL68 480 aa21.28■■□□□ 1
CLN3-252ENST00000636907 PXDNLA1KZ92 1463 aa21.28■■□□□ 1
CLN3-252ENST00000636907 N4BP2Q86UW6 1770 aaPredicted RBP21.27■■□□□ 1
CLN3-252ENST00000636907 KCPQ6ZWJ8 1503 aa21.27■■□□□ 1
CLN3-252ENST00000636907 BARGINQ6ZT62 677 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms