RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 LOC102724428A0A0B4J2F2 783 aa23.95■■□□□ 1.42
CLN3-247ENST00000636351 GIGYF1O75420 1035 aaPredicted RBP23.95■■□□□ 1.42
CLN3-247ENST00000636351 PHKG2P15735 406 aa23.95■■□□□ 1.42
CLN3-247ENST00000636351 PPP2R1AP30153 589 aa23.95■■□□□ 1.42
CLN3-247ENST00000636351 SIK1P57059 783 aa23.95■■□□□ 1.42
CLN3-247ENST00000636351 LINC00116Q8NCU8 138 aa23.95■■□□□ 1.42
CLN3-247ENST00000636351 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.94■■□□□ 1.42
CLN3-247ENST00000636351 IFNL2Q8IZJ0 200 aa23.94■■□□□ 1.42
CLN3-247ENST00000636351 CFAP53Q96M91 514 aa23.93■■□□□ 1.42
CLN3-247ENST00000636351 ASAP1Q9ULH1 1129 aa23.93■■□□□ 1.42
CLN3-247ENST00000636351 UBR3Q6ZT12 1888 aa23.92■■□□□ 1.42
CLN3-247ENST00000636351 RALBP1Q15311 655 aa23.92■■□□□ 1.42
CLN3-247ENST00000636351 SSFA2P28290 1259 aa23.91■■□□□ 1.42
CLN3-247ENST00000636351 ITPK1Q13572 414 aa23.91■■□□□ 1.42
CLN3-247ENST00000636351 DIAPH1O60610 1272 aaKnown RBP23.9■■□□□ 1.42
CLN3-247ENST00000636351 ATP6V1AP38606 617 aa23.9■■□□□ 1.42
CLN3-247ENST00000636351 IGSF1Q8N6C5 1336 aa23.89■■□□□ 1.42
CLN3-247ENST00000636351 GNPATO15228 680 aa23.89■■□□□ 1.41
CLN3-247ENST00000636351 IL13P35225 146 aa23.88■■□□□ 1.41
CLN3-247ENST00000636351 ATG3Q9NT62 314 aa23.88■■□□□ 1.41
CLN3-247ENST00000636351 COL3A1P02461 1466 aaPredicted RBP23.87■■□□□ 1.41
CLN3-247ENST00000636351 ATP10DQ9P241 1426 aa23.86■■□□□ 1.41
CLN3-247ENST00000636351 WWC3Q9ULE0 1092 aa23.86■■□□□ 1.41
CLN3-247ENST00000636351 PLEKHG2Q9H7P9 1386 aa23.86■■□□□ 1.41
CLN3-247ENST00000636351 KDRP35968 1356 aa23.84■■□□□ 1.41
CLN3-247ENST00000636351 U2SURPO15042 1029 aaKnown RBP23.84■■□□□ 1.41
CLN3-247ENST00000636351 MYBBP1AQ9BQG0 1328 aaKnown RBP23.84■■□□□ 1.41
CLN3-247ENST00000636351 SULT6B1Q6IMI4 303 aa23.83■■□□□ 1.41
CLN3-247ENST00000636351 AEBP1Q8IUX7 1158 aa23.83■■□□□ 1.41
CLN3-247ENST00000636351 PRKRIP1Q9H875 184 aaPredicted RBP23.82■■□□□ 1.4
CLN3-247ENST00000636351 ERVV-2B6SEH9 535 aa23.81■■□□□ 1.4
CLN3-247ENST00000636351 DCAF5Q96JK2 942 aa23.81■■□□□ 1.4
CLN3-247ENST00000636351 SLC4A9Q96Q91 983 aa23.81■■□□□ 1.4
CLN3-247ENST00000636351 NUDCQ9Y266 331 aa23.81■■□□□ 1.4
CLN3-247ENST00000636351 HSP90AB1P08238 724 aaKnown RBP23.8■■□□□ 1.4
CLN3-247ENST00000636351 HMOX1P09601 288 aa23.8■■□□□ 1.4
CLN3-247ENST00000636351 PLEKHO1Q53GL0 409 aaPredicted RBP23.8■■□□□ 1.4
CLN3-247ENST00000636351 RBM42Q9BTD8 480 aaKnown RBP23.8■■□□□ 1.4
CLN3-247ENST00000636351 ADCY9O60503 1353 aa23.79■■□□□ 1.4
CLN3-247ENST00000636351 KDM6AO15550 1401 aaPredicted RBP23.79■■□□□ 1.4
CLN3-247ENST00000636351 MMP10P09238 476 aa23.79■■□□□ 1.4
CLN3-247ENST00000636351 ZNF530Q6P9A1 599 aaPredicted RBP23.79■■□□□ 1.4
CLN3-247ENST00000636351 RTCBQ9Y3I0 505 aaKnown RBP23.79■■□□□ 1.4
CLN3-247ENST00000636351 ANP32CO43423 234 aa23.77■■□□□ 1.4
CLN3-247ENST00000636351 TRAPPC3LQ5T215 181 aa23.77■■□□□ 1.4
CLN3-247ENST00000636351 GPBP1L1Q9HC44 474 aaPredicted RBP23.77■■□□□ 1.4
CLN3-247ENST00000636351 CABP4P57796 275 aa23.76■■□□□ 1.39
CLN3-247ENST00000636351 AMOTQ4VCS5 1084 aa23.76■■□□□ 1.39
CLN3-247ENST00000636351 ZNF526Q8TF50 670 aaPredicted RBP23.76■■□□□ 1.39
CLN3-247ENST00000636351 U2AF1L5P0DN76 240 aaPredicted RBP23.75■■□□□ 1.39
CLN3-247ENST00000636351 U2AF1Q01081 240 aaKnown RBP eCLIP23.75■■□□□ 1.39
CLN3-247ENST00000636351 ZNF831Q5JPB2 1677 aa23.75■■□□□ 1.39
CLN3-247ENST00000636351 CICQ96RK0 1608 aaPredicted RBP23.74■■□□□ 1.39
CLN3-247ENST00000636351 CNTNAP4Q9C0A0 1308 aa23.74■■□□□ 1.39
CLN3-247ENST00000636351 PXDNLA1KZ92 1463 aa23.74■■□□□ 1.39
CLN3-247ENST00000636351 RC3H1Q5TC82 1133 aaKnown RBP23.73■■□□□ 1.39
CLN3-247ENST00000636351 NLGN1Q8N2Q7 840 aa23.73■■□□□ 1.39
CLN3-247ENST00000636351 ARHGEF1Q92888 912 aaKnown RBP23.73■■□□□ 1.39
CLN3-247ENST00000636351 COL5A3P25940 1745 aaPredicted RBP23.73■■□□□ 1.39
CLN3-247ENST00000636351 ADRA2BP18089 450 aa23.72■■□□□ 1.39
CLN3-247ENST00000636351 C1orf141Q5JVX7 400 aa23.72■■□□□ 1.39
CLN3-247ENST00000636351 RPS6KA4O75676 772 aa23.71■■□□□ 1.39
CLN3-247ENST00000636351 C10orf71Q711Q0 1435 aa23.7■■□□□ 1.38
CLN3-247ENST00000636351 PTCD1O75127 700 aaKnown RBP23.7■■□□□ 1.38
CLN3-247ENST00000636351 GYS1P13807 737 aa23.7■■□□□ 1.38
CLN3-247ENST00000636351 RFC4P35249 363 aa23.7■■□□□ 1.38
CLN3-247ENST00000636351 NFATC2IPQ8NCF5 419 aa23.69■■□□□ 1.38
CLN3-247ENST00000636351 KIAA1551Q9HCM1 1747 aa23.69■■□□□ 1.38
CLN3-247ENST00000636351 KIF13BQ9NQT8 1826 aa23.68■■□□□ 1.38
CLN3-247ENST00000636351 TGFB2P61812 414 aa23.68■■□□□ 1.38
CLN3-247ENST00000636351 CCDC87Q9NVE4 849 aa23.68■■□□□ 1.38
CLN3-247ENST00000636351 A0A0G2JLW4 131 aa23.67■■□□□ 1.38
CLN3-247ENST00000636351 PRKAR2BP31323 418 aa23.67■■□□□ 1.38
CLN3-247ENST00000636351 BCS1LQ9Y276 419 aa23.67■■□□□ 1.38
CLN3-247ENST00000636351 C4AP0C0L4 1744 aa23.67■■□□□ 1.38
CLN3-247ENST00000636351 RSPH6AQ9H0K4 717 aa23.66■■□□□ 1.38
CLN3-247ENST00000636351 PARP3Q9Y6F1 533 aa23.66■■□□□ 1.38
CLN3-247ENST00000636351 N4BP2Q86UW6 1770 aaPredicted RBP23.65■■□□□ 1.38
CLN3-247ENST00000636351 CRKLP46109 303 aaKnown RBP23.65■■□□□ 1.38
CLN3-247ENST00000636351 WDR43Q15061 677 aaKnown RBP eCLIP23.65■■□□□ 1.38
CLN3-247ENST00000636351 DPEP1P16444 411 aa23.64■■□□□ 1.37
CLN3-247ENST00000636351 CEP350Q5VT06 3117 aa23.63■■□□□ 1.37
CLN3-247ENST00000636351 FCHSD2O94868 740 aa23.63■■□□□ 1.37
CLN3-247ENST00000636351 TJP1Q07157 1748 aa23.63■■□□□ 1.37
CLN3-247ENST00000636351 SRP68Q9UHB9 627 aaKnown RBP23.63■■□□□ 1.37
CLN3-247ENST00000636351 MYH14Q7Z406 1995 aaKnown RBP23.63■■□□□ 1.37
CLN3-247ENST00000636351 NEFMP07197 916 aa23.62■■□□□ 1.37
CLN3-247ENST00000636351 MTHFSDQ2M296 383 aaKnown RBP23.61■■□□□ 1.37
CLN3-247ENST00000636351 GAS2L2Q8NHY3 880 aa23.61■■□□□ 1.37
CLN3-247ENST00000636351 HSPA6P17066 643 aa23.6■■□□□ 1.37
CLN3-247ENST00000636351 FKBP8Q14318 412 aa23.6■■□□□ 1.37
CLN3-247ENST00000636351 AKAP4Q5JQC9 854 aa23.6■■□□□ 1.37
CLN3-247ENST00000636351 SCN11AQ9UI33 1791 aa23.6■■□□□ 1.37
CLN3-247ENST00000636351 USP42Q9H9J4 1324 aaKnown RBP23.59■■□□□ 1.37
CLN3-247ENST00000636351 KIF3CO14782 793 aa23.59■■□□□ 1.37
CLN3-247ENST00000636351 ARHGAP27Q6ZUM4 889 aa23.59■■□□□ 1.37
CLN3-247ENST00000636351 INTS5Q6P9B9 1019 aaKnown RBP23.58■■□□□ 1.37
CLN3-247ENST00000636351 PNNQ9H307 717 aaKnown RBP23.58■■□□□ 1.37
CLN3-247ENST00000636351 SLC52A2Q9HAB3 445 aa23.58■■□□□ 1.37
CLN3-247ENST00000636351 LGR6Q9HBX8 967 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms