RNA–Protein interactions for RNA: ENST00000606000.1

CTSA-210, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 644 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-210ENST00000606000 SIK1P57059 783 aa16.59■□□□□ 0.25
CTSA-210ENST00000606000 ITPK1Q13572 414 aa16.59■□□□□ 0.25
CTSA-210ENST00000606000 COL23A1Q86Y22 540 aaPredicted RBP16.59■□□□□ 0.25
CTSA-210ENST00000606000 LINC00116Q8NCU8 138 aa16.59■□□□□ 0.25
CTSA-210ENST00000606000 ERVV-2B6SEH9 535 aa16.58■□□□□ 0.24
CTSA-210ENST00000606000 MTHFSDQ2M296 383 aaKnown RBP16.58■□□□□ 0.24
CTSA-210ENST00000606000 ZNF831Q5JPB2 1677 aa16.58■□□□□ 0.24
CTSA-210ENST00000606000 TJP1Q07157 1748 aa16.58■□□□□ 0.24
CTSA-210ENST00000606000 MRC1P22897 1456 aa16.57■□□□□ 0.24
CTSA-210ENST00000606000 CABP4P57796 275 aa16.57■□□□□ 0.24
CTSA-210ENST00000606000 SLC4A9Q96Q91 983 aa16.57■□□□□ 0.24
CTSA-210ENST00000606000 ATP6V1AP38606 617 aa16.56■□□□□ 0.24
CTSA-210ENST00000606000 AKAP4Q5JQC9 854 aa16.56■□□□□ 0.24
CTSA-210ENST00000606000 LGR6Q9HBX8 967 aa16.56■□□□□ 0.24
CTSA-210ENST00000606000 PHF14O94880 888 aa16.55■□□□□ 0.24
CTSA-210ENST00000606000 MSL1Q68DK7 614 aa16.55■□□□□ 0.24
CTSA-210ENST00000606000 NFATC2IPQ8NCF5 419 aa16.55■□□□□ 0.24
CTSA-210ENST00000606000 AK7Q96M32 723 aa16.55■□□□□ 0.24
CTSA-210ENST00000606000 RBM42Q9BTD8 480 aaKnown RBP16.55■□□□□ 0.24
CTSA-210ENST00000606000 FHDC1Q9C0D6 1143 aaPredicted RBP16.55■□□□□ 0.24
CTSA-210ENST00000606000 CFAP53Q96M91 514 aa16.54■□□□□ 0.24
CTSA-210ENST00000606000 CICQ96RK0 1608 aaPredicted RBP16.53■□□□□ 0.24
CTSA-210ENST00000606000 RNMTO43148 476 aaKnown RBP16.53■□□□□ 0.24
CTSA-210ENST00000606000 SLC16A10Q8TF71 515 aa16.53■□□□□ 0.24
CTSA-210ENST00000606000 ARXQ96QS3 562 aa16.53■□□□□ 0.24
CTSA-210ENST00000606000 SIPA1L3O60292 1781 aaPredicted RBP16.52■□□□□ 0.24
CTSA-210ENST00000606000 PRKAR2BP31323 418 aa16.52■□□□□ 0.24
CTSA-210ENST00000606000 RSPH6AQ9H0K4 717 aa16.52■□□□□ 0.24
CTSA-210ENST00000606000 KCPQ6ZWJ8 1503 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 C4AP0C0L4 1744 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.51■□□□□ 0.23
CTSA-210ENST00000606000 GNPATO15228 680 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 PTCD1O75127 700 aaKnown RBP16.51■□□□□ 0.23
CTSA-210ENST00000606000 DDX10Q13206 875 aaKnown RBP16.51■□□□□ 0.23
CTSA-210ENST00000606000 KLHL34Q8N239 644 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 PHACTR3Q96KR7 559 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 SYT17Q9BSW7 474 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 SLC52A2Q9HAB3 445 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 UBR2Q8IWV8 1755 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 MAP3K5Q99683 1374 aa16.51■□□□□ 0.23
CTSA-210ENST00000606000 MYH14Q7Z406 1995 aaKnown RBP16.5■□□□□ 0.23
CTSA-210ENST00000606000 U2AF1L5P0DN76 240 aaPredicted RBP16.49■□□□□ 0.23
CTSA-210ENST00000606000 U2AF1Q01081 240 aaKnown RBP eCLIP16.49■□□□□ 0.23
CTSA-210ENST00000606000 SLC39A6Q13433 755 aa16.49■□□□□ 0.23
CTSA-210ENST00000606000 POLD1P28340 1107 aa16.48■□□□□ 0.23
CTSA-210ENST00000606000 SSFA2P28290 1259 aa16.47■□□□□ 0.23
CTSA-210ENST00000606000 FLAD1Q8NFF5 587 aa16.47■□□□□ 0.23
CTSA-210ENST00000606000 NUDCQ9Y266 331 aa16.47■□□□□ 0.23
CTSA-210ENST00000606000 IL17REQ8NFR9 667 aa16.46■□□□□ 0.23
CTSA-210ENST00000606000 GAS2L2Q8NHY3 880 aa16.46■□□□□ 0.23
CTSA-210ENST00000606000 CNTNAP4Q9C0A0 1308 aa16.45■□□□□ 0.22
CTSA-210ENST00000606000 DLG5Q8TDM6 1919 aa16.45■□□□□ 0.22
CTSA-210ENST00000606000 GNAT3A8MTJ3 354 aa16.45■□□□□ 0.22
CTSA-210ENST00000606000 POTEDQ86YR6 584 aa16.45■□□□□ 0.22
CTSA-210ENST00000606000 NLGN2Q8NFZ4 835 aa16.45■□□□□ 0.22
CTSA-210ENST00000606000 DNAJC10Q8IXB1 793 aa16.44■□□□□ 0.22
CTSA-210ENST00000606000 HMGB2P26583 209 aaKnown RBP16.43■□□□□ 0.22
CTSA-210ENST00000606000 CRKLP46109 303 aaKnown RBP16.43■□□□□ 0.22
CTSA-210ENST00000606000 RTCBQ9Y3I0 505 aaKnown RBP16.43■□□□□ 0.22
CTSA-210ENST00000606000 CEMIPQ8WUJ3 1361 aa16.42■□□□□ 0.22
CTSA-210ENST00000606000 RC3H1Q5TC82 1133 aaKnown RBP16.42■□□□□ 0.22
CTSA-210ENST00000606000 RPS6KA4O75676 772 aa16.41■□□□□ 0.22
CTSA-210ENST00000606000 FCHSD2O94868 740 aa16.41■□□□□ 0.22
CTSA-210ENST00000606000 INTS5Q6P9B9 1019 aaKnown RBP16.41■□□□□ 0.22
CTSA-210ENST00000606000 ARHGEF1Q92888 912 aaKnown RBP16.41■□□□□ 0.22
CTSA-210ENST00000606000 TEFQ10587 303 aa16.4■□□□□ 0.22
CTSA-210ENST00000606000 DCTN1Q14203 1278 aa16.4■□□□□ 0.22
CTSA-210ENST00000606000 TRAPPC3LQ5T215 181 aa16.4■□□□□ 0.22
CTSA-210ENST00000606000 MCM10Q7L590 875 aa16.4■□□□□ 0.22
CTSA-210ENST00000606000 KCNQ3O43525 872 aa16.39■□□□□ 0.21
CTSA-210ENST00000606000 RALBP1Q15311 655 aa16.39■□□□□ 0.21
CTSA-210ENST00000606000 SRP68Q9UHB9 627 aaKnown RBP16.39■□□□□ 0.21
CTSA-210ENST00000606000 CYP19A1P11511 503 aaPredicted RBP16.38■□□□□ 0.21
CTSA-210ENST00000606000 TTC5Q8N0Z6 440 aa16.38■□□□□ 0.21
CTSA-210ENST00000606000 ZNF496Q96IT1 587 aaPredicted RBP16.38■□□□□ 0.21
CTSA-210ENST00000606000 PLEKHF1Q96S99 279 aa16.38■□□□□ 0.21
CTSA-210ENST00000606000 KIAA1551Q9HCM1 1747 aa16.38■□□□□ 0.21
CTSA-210ENST00000606000 DCAF8L1A6NGE4 600 aa16.37■□□□□ 0.21
CTSA-210ENST00000606000 MMP10P09238 476 aa16.37■□□□□ 0.21
CTSA-210ENST00000606000 GYS1P13807 737 aa16.37■□□□□ 0.21
CTSA-210ENST00000606000 RFC4P35249 363 aa16.37■□□□□ 0.21
CTSA-210ENST00000606000 ZNF790Q6PG37 636 aa16.37■□□□□ 0.21
CTSA-210ENST00000606000 PELP1Q8IZL8 1130 aaKnown RBP16.37■□□□□ 0.21
CTSA-210ENST00000606000 CCDC87Q9NVE4 849 aa16.37■□□□□ 0.21
CTSA-210ENST00000606000 ZBTB1Q9Y2K1 713 aa16.37■□□□□ 0.21
CTSA-210ENST00000606000 MYBBP1AQ9BQG0 1328 aaKnown RBP16.37■□□□□ 0.21
CTSA-210ENST00000606000 KIF13BQ9NQT8 1826 aa16.36■□□□□ 0.21
CTSA-210ENST00000606000 SOS1Q07889 1333 aaPredicted RBP16.36■□□□□ 0.21
CTSA-210ENST00000606000 USP42Q9H9J4 1324 aaKnown RBP16.36■□□□□ 0.21
CTSA-210ENST00000606000 HEG1Q9ULI3 1381 aa16.36■□□□□ 0.21
CTSA-210ENST00000606000 BTBD11A6QL63 1104 aa16.35■□□□□ 0.21
CTSA-210ENST00000606000 WWC3Q9ULE0 1092 aa16.35■□□□□ 0.21
CTSA-210ENST00000606000 KDM3BQ7LBC6 1761 aa16.35■□□□□ 0.21
CTSA-210ENST00000606000 N4BP2Q86UW6 1770 aaPredicted RBP16.35■□□□□ 0.21
CTSA-210ENST00000606000 COL15A1P39059 1388 aa16.35■□□□□ 0.21
CTSA-210ENST00000606000 YBX3P16989 372 aaKnown RBP eCLIP16.34■□□□□ 0.21
CTSA-210ENST00000606000 YY1P25490 414 aa16.34■□□□□ 0.21
CTSA-210ENST00000606000 GPR162Q16538 588 aa16.34■□□□□ 0.21
CTSA-210ENST00000606000 VSIG10Q8N0Z9 540 aa16.34■□□□□ 0.21
CTSA-210ENST00000606000 RTF1Q92541 710 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms