RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 EIF4A2Q14240 407 aaKnown RBP11.91□□□□□ -0.5
TRIM28-214ENST00000600840 MPRIPQ6WCQ1 1025 aa11.91□□□□□ -0.5
TRIM28-214ENST00000600840 NMRK2Q9NPI5 230 aa11.91□□□□□ -0.5
TRIM28-214ENST00000600840 C4BP0C0L5 1744 aa11.91□□□□□ -0.5
TRIM28-214ENST00000600840 KIAA1551Q9HCM1 1747 aa11.91□□□□□ -0.5
TRIM28-214ENST00000600840 UBR3Q6ZT12 1888 aa11.91□□□□□ -0.5
TRIM28-214ENST00000600840 N4BP2Q86UW6 1770 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-214ENST00000600840 TOMM70O94826 608 aa11.9□□□□□ -0.5
TRIM28-214ENST00000600840 NKX1-1Q15270 411 aaPredicted RBP11.89□□□□□ -0.51
TRIM28-214ENST00000600840 TNS4Q8IZW8 715 aa11.89□□□□□ -0.51
TRIM28-214ENST00000600840 PIGBQ92521 554 aa11.89□□□□□ -0.51
TRIM28-214ENST00000600840 PHF14O94880 888 aa11.88□□□□□ -0.51
TRIM28-214ENST00000600840 KLRG1Q96E93 195 aa11.88□□□□□ -0.51
TRIM28-214ENST00000600840 PALLDQ8WX93 1383 aa11.88□□□□□ -0.51
TRIM28-214ENST00000600840 PRELPP51888 382 aa11.87□□□□□ -0.51
TRIM28-214ENST00000600840 PHKG2P15735 406 aa11.86□□□□□ -0.51
TRIM28-214ENST00000600840 CC2D1BQ5T0F9 858 aaKnown RBP11.86□□□□□ -0.51
TRIM28-214ENST00000600840 JMYQ8N9B5 988 aa11.86□□□□□ -0.51
TRIM28-214ENST00000600840 PRKRIP1Q9H875 184 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-214ENST00000600840 ASAP1Q9ULH1 1129 aa11.86□□□□□ -0.51
TRIM28-214ENST00000600840 SPG7Q9UQ90 795 aa11.86□□□□□ -0.51
TRIM28-214ENST00000600840 KIF13BQ9NQT8 1826 aa11.86□□□□□ -0.51
TRIM28-214ENST00000600840 PXDNLA1KZ92 1463 aa11.85□□□□□ -0.51
TRIM28-214ENST00000600840 MORC1Q86VD1 984 aa11.85□□□□□ -0.51
TRIM28-214ENST00000600840 AEBP1Q8IUX7 1158 aa11.85□□□□□ -0.51
TRIM28-214ENST00000600840 FLAD1Q8NFF5 587 aa11.85□□□□□ -0.51
TRIM28-214ENST00000600840 ITPK1Q13572 414 aa11.84□□□□□ -0.51
TRIM28-214ENST00000600840 LINC00116Q8NCU8 138 aa11.84□□□□□ -0.51
TRIM28-214ENST00000600840 AK7Q96M32 723 aa11.84□□□□□ -0.51
TRIM28-214ENST00000600840 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.84□□□□□ -0.51
TRIM28-214ENST00000600840 BRCA1P38398 1863 aaKnown RBP11.83□□□□□ -0.52
TRIM28-214ENST00000600840 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.83□□□□□ -0.52
TRIM28-214ENST00000600840 RALBP1Q15311 655 aa11.83□□□□□ -0.52
TRIM28-214ENST00000600840 IFNL2Q8IZJ0 200 aa11.83□□□□□ -0.52
TRIM28-214ENST00000600840 ATG3Q9NT62 314 aa11.83□□□□□ -0.52
TRIM28-214ENST00000600840 BCS1LQ9Y276 419 aa11.83□□□□□ -0.52
TRIM28-214ENST00000600840 LOC102724428A0A0B4J2F2 783 aa11.82□□□□□ -0.52
TRIM28-214ENST00000600840 PPP2R1AP30153 589 aa11.82□□□□□ -0.52
TRIM28-214ENST00000600840 SIK1P57059 783 aa11.82□□□□□ -0.52
TRIM28-214ENST00000600840 ARHGAP27Q6ZUM4 889 aa11.82□□□□□ -0.52
TRIM28-214ENST00000600840 RBM46Q8TBY0 533 aaKnown RBP11.82□□□□□ -0.52
TRIM28-214ENST00000600840 SMARCC1Q92922 1105 aaPredicted RBP11.82□□□□□ -0.52
TRIM28-214ENST00000600840 SLC4A9Q96Q91 983 aa11.82□□□□□ -0.52
TRIM28-214ENST00000600840 KCPQ6ZWJ8 1503 aa11.81□□□□□ -0.52
TRIM28-214ENST00000600840 KDM6AO15550 1401 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-214ENST00000600840 A0A0G2JLW4 131 aa11.81□□□□□ -0.52
TRIM28-214ENST00000600840 TMOD3Q9NYL9 352 aa11.81□□□□□ -0.52
TRIM28-214ENST00000600840 MMP10P09238 476 aa11.8□□□□□ -0.52
TRIM28-214ENST00000600840 IL13P35225 146 aa11.8□□□□□ -0.52
TRIM28-214ENST00000600840 DIEXFQ68CQ4 756 aaKnown RBP11.8□□□□□ -0.52
TRIM28-214ENST00000600840 C16orf71Q8IYS4 520 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-214ENST00000600840 ATP6V1AP38606 617 aa11.79□□□□□ -0.52
TRIM28-214ENST00000600840 MTHFSP49914 203 aa11.79□□□□□ -0.52
TRIM28-214ENST00000600840 CNGB1Q14028 1251 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-214ENST00000600840 C9orf131Q5VYM1 1079 aa11.79□□□□□ -0.52
TRIM28-214ENST00000600840 SULT6B1Q6IMI4 303 aa11.79□□□□□ -0.52
TRIM28-214ENST00000600840 ZNF530Q6P9A1 599 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-214ENST00000600840 ARFGEF1Q9Y6D6 1849 aa11.79□□□□□ -0.52
TRIM28-214ENST00000600840 KDRP35968 1356 aa11.79□□□□□ -0.52
TRIM28-214ENST00000600840 TNRC6CQ9HCJ0 1690 aaKnown RBP11.78□□□□□ -0.52
TRIM28-214ENST00000600840 HSPA1AP0DMV8 641 aaKnown RBP11.78□□□□□ -0.52
TRIM28-214ENST00000600840 HSPA1BP0DMV9 641 aaKnown RBP11.78□□□□□ -0.52
TRIM28-214ENST00000600840 SSFA2P28290 1259 aa11.78□□□□□ -0.52
TRIM28-214ENST00000600840 FSTL1Q12841 308 aa11.78□□□□□ -0.52
TRIM28-214ENST00000600840 PLEKHO1Q53GL0 409 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-214ENST00000600840 MYH14Q7Z406 1995 aaKnown RBP11.78□□□□□ -0.52
TRIM28-214ENST00000600840 C10orf71Q711Q0 1435 aa11.77□□□□□ -0.52
TRIM28-214ENST00000600840 ERVV-2B6SEH9 535 aa11.77□□□□□ -0.53
TRIM28-214ENST00000600840 GNPATO15228 680 aa11.77□□□□□ -0.53
TRIM28-214ENST00000600840 FCHSD2O94868 740 aa11.77□□□□□ -0.53
TRIM28-214ENST00000600840 DPEP1P16444 411 aa11.77□□□□□ -0.53
TRIM28-214ENST00000600840 CCDC184Q52MB2 194 aa11.77□□□□□ -0.53
TRIM28-214ENST00000600840 DCAF5Q96JK2 942 aa11.77□□□□□ -0.53
TRIM28-214ENST00000600840 RRAGCQ9HB90 399 aa11.77□□□□□ -0.53
TRIM28-214ENST00000600840 MYBBP1AQ9BQG0 1328 aaKnown RBP11.77□□□□□ -0.53
TRIM28-214ENST00000600840 C4AP0C0L4 1744 aa11.77□□□□□ -0.53
TRIM28-214ENST00000600840 COL5A3P25940 1745 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-214ENST00000600840 VIRMAQ69YN4 1812 aaKnown RBP11.76□□□□□ -0.53
TRIM28-214ENST00000600840 COL3A1P02461 1466 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-214ENST00000600840 RBM42Q9BTD8 480 aaKnown RBP11.76□□□□□ -0.53
TRIM28-214ENST00000600840 SCN11AQ9UI33 1791 aa11.76□□□□□ -0.53
TRIM28-214ENST00000600840 SBF1O95248 1867 aa11.76□□□□□ -0.53
TRIM28-214ENST00000600840 ZNF831Q5JPB2 1677 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 ANP32CO43423 234 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 HMOX1P09601 288 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 CABP4P57796 275 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 TGFB2P61812 414 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 AMOTQ4VCS5 1084 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 MIER1Q8N108 512 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 NFATC2IPQ8NCF5 419 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 LGR6Q9HBX8 967 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 PLEKHG2Q9H7P9 1386 aa11.75□□□□□ -0.53
TRIM28-214ENST00000600840 SLC34A2O95436 690 aa11.74□□□□□ -0.53
TRIM28-214ENST00000600840 RNF181Q9P0P0 153 aa11.74□□□□□ -0.53
TRIM28-214ENST00000600840 TJP1Q07157 1748 aa11.74□□□□□ -0.53
TRIM28-214ENST00000600840 PTCD1O75127 700 aaKnown RBP11.73□□□□□ -0.53
TRIM28-214ENST00000600840 HSP90AB1P08238 724 aaKnown RBP11.73□□□□□ -0.53
TRIM28-214ENST00000600840 KCNA3P22001 575 aa11.73□□□□□ -0.53
TRIM28-214ENST00000600840 KDM2BQ8NHM5 1336 aa11.73□□□□□ -0.53
TRIM28-214ENST00000600840 C1orf141Q5JVX7 400 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms