RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ANKRD44Q8N8A2 993 aa18.16■□□□□ 0.5
VRK3-217ENST00000599538 FKBP5Q13451 457 aaPredicted RBP18.15■□□□□ 0.5
VRK3-217ENST00000599538 NBR1Q14596 966 aa18.15■□□□□ 0.5
VRK3-217ENST00000599538 AMOTQ4VCS5 1084 aa18.15■□□□□ 0.5
VRK3-217ENST00000599538 RNMTO43148 476 aaKnown RBP18.14■□□□□ 0.5
VRK3-217ENST00000599538 HDGFL1Q5TGJ6 251 aa18.14■□□□□ 0.5
VRK3-217ENST00000599538 PHAXQ9H814 394 aaKnown RBP18.14■□□□□ 0.5
VRK3-217ENST00000599538 ZNF335Q9H4Z2 1342 aaPredicted RBP18.14■□□□□ 0.49
VRK3-217ENST00000599538 EIF2S2P20042 333 aaKnown RBP18.14■□□□□ 0.49
VRK3-217ENST00000599538 TEFQ10587 303 aa18.14■□□□□ 0.49
VRK3-217ENST00000599538 BCL11AQ9H165 835 aa18.14■□□□□ 0.49
VRK3-217ENST00000599538 DCTPP1Q9H773 170 aa18.14■□□□□ 0.49
VRK3-217ENST00000599538 TNS3Q68CZ2 1445 aa18.13■□□□□ 0.49
VRK3-217ENST00000599538 C1orf141Q5JVX7 400 aa18.13■□□□□ 0.49
VRK3-217ENST00000599538 BRINP3Q76B58 766 aa18.13■□□□□ 0.49
VRK3-217ENST00000599538 KDM3BQ7LBC6 1761 aa18.13■□□□□ 0.49
VRK3-217ENST00000599538 SPATA31A3Q5VYP0 1347 aa18.13■□□□□ 0.49
VRK3-217ENST00000599538 BTBD11A6QL63 1104 aa18.13■□□□□ 0.49
VRK3-217ENST00000599538 NLRP2Q9NX02 1062 aa18.13■□□□□ 0.49
VRK3-217ENST00000599538 COL18A1P39060 1754 aa18.12■□□□□ 0.49
VRK3-217ENST00000599538 CCT4P50991 539 aaKnown RBP18.12■□□□□ 0.49
VRK3-217ENST00000599538 TBC1D32Q96NH3 1257 aa18.11■□□□□ 0.49
VRK3-217ENST00000599538 RPAP2Q8IXW5 612 aaPredicted RBP18.11■□□□□ 0.49
VRK3-217ENST00000599538 CACNA1FO60840 1977 aa18.1■□□□□ 0.49
VRK3-217ENST00000599538 ANXA1P04083 346 aa18.1■□□□□ 0.49
VRK3-217ENST00000599538 C16orf71Q8IYS4 520 aaPredicted RBP18.1■□□□□ 0.49
VRK3-217ENST00000599538 SOS1Q07889 1333 aaPredicted RBP18.1■□□□□ 0.49
VRK3-217ENST00000599538 MFAP1P55081 439 aaKnown RBP18.1■□□□□ 0.49
VRK3-217ENST00000599538 CHPF2Q9P2E5 772 aa18.1■□□□□ 0.49
VRK3-217ENST00000599538 APBB1O00213 710 aa18.09■□□□□ 0.49
VRK3-217ENST00000599538 CRYBG1Q9Y4K1 1723 aa18.09■□□□□ 0.49
VRK3-217ENST00000599538 PRAMEF22A3QJZ6 481 aa18.08■□□□□ 0.49
VRK3-217ENST00000599538 MEGF6O75095 1541 aa18.08■□□□□ 0.48
VRK3-217ENST00000599538 SMARCA5O60264 1052 aaPredicted RBP18.08■□□□□ 0.48
VRK3-217ENST00000599538 OTUD7AQ8TE49 926 aaPredicted RBP18.08■□□□□ 0.48
VRK3-217ENST00000599538 CSB-PGBD3P0DP91 1061 aa18.07■□□□□ 0.48
VRK3-217ENST00000599538 BMP2KLQ5H9B9 411 aa18.07■□□□□ 0.48
VRK3-217ENST00000599538 RAPGEF4Q8WZA2 1011 aa18.07■□□□□ 0.48
VRK3-217ENST00000599538 UPF2Q9HAU5 1272 aaKnown RBP18.07■□□□□ 0.48
VRK3-217ENST00000599538 PLEKHM2Q8IWE5 1019 aa18.07■□□□□ 0.48
VRK3-217ENST00000599538 SLAIN2Q9P270 581 aa18.06■□□□□ 0.48
VRK3-217ENST00000599538 GNAI2P04899 355 aa18.05■□□□□ 0.48
VRK3-217ENST00000599538 GSPT1P15170 499 aaKnown RBP18.05■□□□□ 0.48
VRK3-217ENST00000599538 USP44Q9H0E7 712 aa18.05■□□□□ 0.48
VRK3-217ENST00000599538 DAXXQ9UER7 740 aaPredicted RBP18.05■□□□□ 0.48
VRK3-217ENST00000599538 SIPA1L3O60292 1781 aaPredicted RBP18.05■□□□□ 0.48
VRK3-217ENST00000599538 GIGYF1O75420 1035 aaPredicted RBP18.04■□□□□ 0.48
VRK3-217ENST00000599538 HOXB7P09629 217 aa18.04■□□□□ 0.48
VRK3-217ENST00000599538 OVOS2A0A0G2JMS6 1433 aa18.04■□□□□ 0.48
VRK3-217ENST00000599538 KDM6AO15550 1401 aaPredicted RBP18.04■□□□□ 0.48
VRK3-217ENST00000599538 PNMA6EA0A0J9YXQ4 647 aa18.04■□□□□ 0.48
VRK3-217ENST00000599538 SLC39A6Q13433 755 aa18.04■□□□□ 0.48
VRK3-217ENST00000599538 PROSER3Q2NL68 480 aa18.04■□□□□ 0.48
VRK3-217ENST00000599538 C22orf23Q9BZE7 217 aa18.04■□□□□ 0.48
VRK3-217ENST00000599538 ADAMTS7Q9UKP4 1686 aa18.04■□□□□ 0.48
VRK3-217ENST00000599538 HEG1Q9ULI3 1381 aa18.03■□□□□ 0.48
VRK3-217ENST00000599538 PHKG2P15735 406 aa18.03■□□□□ 0.48
VRK3-217ENST00000599538 TATP17735 454 aaPredicted RBP18.03■□□□□ 0.48
VRK3-217ENST00000599538 PI4KAP2A4QPH2 592 aa18.02■□□□□ 0.48
VRK3-217ENST00000599538 PI4KAP1Q8N8J0 262 aa18.02■□□□□ 0.48
VRK3-217ENST00000599538 LRRFIP2Q9Y608 721 aaKnown RBP18.02■□□□□ 0.48
VRK3-217ENST00000599538 CPDO75976 1380 aa18.02■□□□□ 0.48
VRK3-217ENST00000599538 EXOC6BQ9Y2D4 811 aa18.02■□□□□ 0.47
VRK3-217ENST00000599538 SOS2Q07890 1332 aaPredicted RBP18.01■□□□□ 0.47
VRK3-217ENST00000599538 CYP27B1O15528 508 aa18.01■□□□□ 0.47
VRK3-217ENST00000599538 GNAI3P08754 354 aa18.01■□□□□ 0.47
VRK3-217ENST00000599538 N4BP2Q86UW6 1770 aaPredicted RBP18.01■□□□□ 0.47
VRK3-217ENST00000599538 PXDNLA1KZ92 1463 aa18.01■□□□□ 0.47
VRK3-217ENST00000599538 TBC1D9Q6ZT07 1266 aa18.01■□□□□ 0.47
VRK3-217ENST00000599538 NFATC2IPQ8NCF5 419 aa18.01■□□□□ 0.47
VRK3-217ENST00000599538 HMMRO75330 724 aa18■□□□□ 0.47
VRK3-217ENST00000599538 ADCY9O60503 1353 aa18■□□□□ 0.47
VRK3-217ENST00000599538 SLC52A2Q9HAB3 445 aa17.99■□□□□ 0.47
VRK3-217ENST00000599538 SPG7Q9UQ90 795 aa17.99■□□□□ 0.47
VRK3-217ENST00000599538 SCN11AQ9UI33 1791 aa17.99■□□□□ 0.47
VRK3-217ENST00000599538 ATP8B2P98198 1209 aa17.99■□□□□ 0.47
VRK3-217ENST00000599538 BEND3Q5T5X7 828 aa17.99■□□□□ 0.47
VRK3-217ENST00000599538 DNAAF4Q8WXU2 420 aa17.99■□□□□ 0.47
VRK3-217ENST00000599538 SRCIN1Q9C0H9 1055 aa17.99■□□□□ 0.47
VRK3-217ENST00000599538 DBF4Q9UBU7 674 aaPredicted RBP17.99■□□□□ 0.47
VRK3-217ENST00000599538 NBPF7P0C2Y1 421 aaPredicted RBP17.98■□□□□ 0.47
VRK3-217ENST00000599538 TTC22Q5TAA0 569 aa17.98■□□□□ 0.47
VRK3-217ENST00000599538 ZNF790Q6PG37 636 aa17.98■□□□□ 0.47
VRK3-217ENST00000599538 TBC1D2Q9BYX2 928 aa17.98■□□□□ 0.47
VRK3-217ENST00000599538 PRDM11Q9NQV5 511 aa17.98■□□□□ 0.47
VRK3-217ENST00000599538 UBTFL1P0CB47 393 aaPredicted RBP17.98■□□□□ 0.47
VRK3-217ENST00000599538 IFNL2Q8IZJ0 200 aa17.98■□□□□ 0.47
VRK3-217ENST00000599538 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.98■□□□□ 0.471e-7■■□□□ 12.1
VRK3-217ENST00000599538 ABCC6O95255 1503 aa17.96■□□□□ 0.47
VRK3-217ENST00000599538 PDIA6Q15084 440 aa17.95■□□□□ 0.46
VRK3-217ENST00000599538 TSHZ3Q63HK5 1081 aa17.95■□□□□ 0.46
VRK3-217ENST00000599538 ZNF496Q96IT1 587 aaPredicted RBP17.95■□□□□ 0.46
VRK3-217ENST00000599538 MAP3K2Q9Y2U5 619 aa17.95■□□□□ 0.46
VRK3-217ENST00000599538 BECN1Q14457 450 aa17.94■□□□□ 0.46
VRK3-217ENST00000599538 C5P01031 1676 aa17.94■□□□□ 0.46
VRK3-217ENST00000599538 PKD1L3Q7Z443 1732 aa17.94■□□□□ 0.46
VRK3-217ENST00000599538 CDC45O75419 566 aa17.93■□□□□ 0.46
VRK3-217ENST00000599538 SDSP20132 328 aa17.93■□□□□ 0.46
VRK3-217ENST00000599538 RBM25P49756 843 aaKnown RBP17.93■□□□□ 0.46
VRK3-217ENST00000599538 TOM1L2Q6ZVM7 507 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms