RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 HMOX1P09601 288 aa14.3□□□□□ -0.12
LIG1-213ENST00000596672 PLEKHO1Q53GL0 409 aaPredicted RBP14.3□□□□□ -0.12
LIG1-213ENST00000596672 LGR6Q9HBX8 967 aa14.3□□□□□ -0.12
LIG1-213ENST00000596672 COL5A3P25940 1745 aaPredicted RBP14.29□□□□□ -0.12
LIG1-213ENST00000596672 ERVV-2B6SEH9 535 aa14.29□□□□□ -0.12
LIG1-213ENST00000596672 DCAF5Q96JK2 942 aa14.29□□□□□ -0.12
LIG1-213ENST00000596672 NPC1L1Q9UHC9 1359 aa14.29□□□□□ -0.12
LIG1-213ENST00000596672 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.28□□□□□ -0.12
LIG1-213ENST00000596672 MSH5O43196 834 aa14.28□□□□□ -0.12
LIG1-213ENST00000596672 PHF14O94880 888 aa14.28□□□□□ -0.12
LIG1-213ENST00000596672 ZNF831Q5JPB2 1677 aa14.27□□□□□ -0.12
LIG1-213ENST00000596672 ADAMTS7Q9UKP4 1686 aa14.27□□□□□ -0.12
LIG1-213ENST00000596672 YY1P25490 414 aa14.27□□□□□ -0.13
LIG1-213ENST00000596672 ATP6V1AP38606 617 aa14.27□□□□□ -0.13
LIG1-213ENST00000596672 AMOTQ4VCS5 1084 aa14.27□□□□□ -0.13
LIG1-213ENST00000596672 NFATC2IPQ8NCF5 419 aa14.27□□□□□ -0.13
LIG1-213ENST00000596672 TJP1Q07157 1748 aa14.27□□□□□ -0.13
LIG1-213ENST00000596672 CHD4Q14839 1912 aa14.26□□□□□ -0.13
LIG1-213ENST00000596672 MTHFSDQ2M296 383 aaKnown RBP14.26□□□□□ -0.13
LIG1-213ENST00000596672 YBX3P16989 372 aaKnown RBP eCLIP14.25□□□□□ -0.13
LIG1-213ENST00000596672 KLHL34Q8N239 644 aa14.25□□□□□ -0.13
LIG1-213ENST00000596672 AK7Q96M32 723 aa14.25□□□□□ -0.13
LIG1-213ENST00000596672 GNPATO15228 680 aa14.24□□□□□ -0.13
LIG1-213ENST00000596672 DIAPH1O60610 1272 aaKnown RBP14.24□□□□□ -0.13
LIG1-213ENST00000596672 POLD1P28340 1107 aa14.24□□□□□ -0.13
LIG1-213ENST00000596672 CABP4P57796 275 aa14.24□□□□□ -0.13
LIG1-213ENST00000596672 RBM42Q9BTD8 480 aaKnown RBP14.24□□□□□ -0.13
LIG1-213ENST00000596672 RNMTO43148 476 aaKnown RBP14.23□□□□□ -0.13
LIG1-213ENST00000596672 PTCD1O75127 700 aaKnown RBP14.23□□□□□ -0.13
LIG1-213ENST00000596672 MRC1P22897 1456 aa14.23□□□□□ -0.13
LIG1-213ENST00000596672 C4AP0C0L4 1744 aa14.22□□□□□ -0.13
LIG1-213ENST00000596672 KIAA1551Q9HCM1 1747 aa14.22□□□□□ -0.13
LIG1-213ENST00000596672 HSP90AB1P08238 724 aaKnown RBP14.22□□□□□ -0.13
LIG1-213ENST00000596672 SSFA2P28290 1259 aa14.22□□□□□ -0.13
LIG1-213ENST00000596672 SLC39A6Q13433 755 aa14.22□□□□□ -0.13
LIG1-213ENST00000596672 AKAP4Q5JQC9 854 aa14.22□□□□□ -0.13
LIG1-213ENST00000596672 KCPQ6ZWJ8 1503 aa14.21□□□□□ -0.13
LIG1-213ENST00000596672 C1orf141Q5JVX7 400 aa14.21□□□□□ -0.13
LIG1-213ENST00000596672 FLAD1Q8NFF5 587 aa14.21□□□□□ -0.13
LIG1-213ENST00000596672 ARHGEF1Q92888 912 aaKnown RBP14.21□□□□□ -0.13
LIG1-213ENST00000596672 PHACTR3Q96KR7 559 aa14.21□□□□□ -0.13
LIG1-213ENST00000596672 SLC52A2Q9HAB3 445 aa14.21□□□□□ -0.13
LIG1-213ENST00000596672 CICQ96RK0 1608 aaPredicted RBP14.21□□□□□ -0.13
LIG1-213ENST00000596672 CNTNAP4Q9C0A0 1308 aa14.2□□□□□ -0.14
LIG1-213ENST00000596672 PPP2R1AP30153 589 aa14.2□□□□□ -0.14
LIG1-213ENST00000596672 RC3H1Q5TC82 1133 aaKnown RBP14.2□□□□□ -0.14
LIG1-213ENST00000596672 INTS5Q6P9B9 1019 aaKnown RBP14.2□□□□□ -0.14
LIG1-213ENST00000596672 IL17REQ8NFR9 667 aa14.2□□□□□ -0.14
LIG1-213ENST00000596672 SIPA1L3O60292 1781 aaPredicted RBP14.19□□□□□ -0.14
LIG1-213ENST00000596672 RPS6KA4O75676 772 aa14.19□□□□□ -0.14
LIG1-213ENST00000596672 CRKLP46109 303 aaKnown RBP14.19□□□□□ -0.14
LIG1-213ENST00000596672 DNAJC10Q8IXB1 793 aa14.19□□□□□ -0.14
LIG1-213ENST00000596672 GYS1P13807 737 aa14.18□□□□□ -0.14
LIG1-213ENST00000596672 GPR162Q16538 588 aa14.18□□□□□ -0.14
LIG1-213ENST00000596672 ZNF784Q8NCA9 323 aaPredicted RBP14.18□□□□□ -0.14
LIG1-213ENST00000596672 SRP68Q9UHB9 627 aaKnown RBP14.18□□□□□ -0.14
LIG1-213ENST00000596672 WWC3Q9ULE0 1092 aa14.18□□□□□ -0.14
LIG1-213ENST00000596672 UBR2Q8IWV8 1755 aa14.18□□□□□ -0.14
LIG1-213ENST00000596672 KIF13BQ9NQT8 1826 aa14.18□□□□□ -0.14
LIG1-213ENST00000596672 U2SURPO15042 1029 aaKnown RBP14.17□□□□□ -0.14
LIG1-213ENST00000596672 RSPH6AQ9H0K4 717 aa14.17□□□□□ -0.14
LIG1-213ENST00000596672 CD2APQ9Y5K6 639 aa14.17□□□□□ -0.14
LIG1-213ENST00000596672 MMP10P09238 476 aa14.16□□□□□ -0.14
LIG1-213ENST00000596672 TRAPPC3LQ5T215 181 aa14.16□□□□□ -0.14
LIG1-213ENST00000596672 PELP1Q8IZL8 1130 aaKnown RBP14.16□□□□□ -0.14
LIG1-213ENST00000596672 RTCBQ9Y3I0 505 aaKnown RBP14.16□□□□□ -0.14
LIG1-213ENST00000596672 N4BP2Q86UW6 1770 aaPredicted RBP14.16□□□□□ -0.14
LIG1-213ENST00000596672 DCAF8L1A6NGE4 600 aa14.15□□□□□ -0.14
LIG1-213ENST00000596672 KCNQ3O43525 872 aa14.15□□□□□ -0.14
LIG1-213ENST00000596672 CYP19A1P11511 503 aaPredicted RBP14.15□□□□□ -0.14
LIG1-213ENST00000596672 PRKAR2BP31323 418 aa14.14□□□□□ -0.15
LIG1-213ENST00000596672 DDR1Q08345 913 aa14.14□□□□□ -0.15
LIG1-213ENST00000596672 FKBP8Q14318 412 aa14.14□□□□□ -0.15
LIG1-213ENST00000596672 PXDNLA1KZ92 1463 aa14.13□□□□□ -0.15
LIG1-213ENST00000596672 BCL2L12Q9HB09 334 aa14.13□□□□□ -0.15
LIG1-213ENST00000596672 CEMIPQ8WUJ3 1361 aa14.12□□□□□ -0.15
LIG1-213ENST00000596672 ADRA2BP18089 450 aa14.12□□□□□ -0.15
LIG1-213ENST00000596672 ZNF496Q96IT1 587 aaPredicted RBP14.12□□□□□ -0.15
LIG1-213ENST00000596672 ZBTB1Q9Y2K1 713 aa14.12□□□□□ -0.15
LIG1-213ENST00000596672 C10orf71Q711Q0 1435 aa14.12□□□□□ -0.15
LIG1-213ENST00000596672 BRCA1P38398 1863 aaKnown RBP14.12□□□□□ -0.15
LIG1-213ENST00000596672 SOS1Q07889 1333 aaPredicted RBP14.12□□□□□ -0.15
LIG1-213ENST00000596672 USP42Q9H9J4 1324 aaKnown RBP14.12□□□□□ -0.15
LIG1-213ENST00000596672 CCDC87Q9NVE4 849 aa14.11□□□□□ -0.15
LIG1-213ENST00000596672 A0A0G2JLW4 131 aa14.1□□□□□ -0.15
LIG1-213ENST00000596672 GNAT3A8MTJ3 354 aa14.1□□□□□ -0.15
LIG1-213ENST00000596672 KCNA3P22001 575 aa14.1□□□□□ -0.15
LIG1-213ENST00000596672 HMGB2P26583 209 aaKnown RBP14.1□□□□□ -0.15
LIG1-213ENST00000596672 TM4SF1P30408 202 aa14.1□□□□□ -0.15
LIG1-213ENST00000596672 RFC4P35249 363 aa14.1□□□□□ -0.15
LIG1-213ENST00000596672 DCTN1Q14203 1278 aa14.1□□□□□ -0.15
LIG1-213ENST00000596672 NLGN1Q8N2Q7 840 aa14.1□□□□□ -0.15
LIG1-213ENST00000596672 AFDNP55196 1824 aaKnown RBP14.1□□□□□ -0.15
LIG1-213ENST00000596672 DLG5Q8TDM6 1919 aa14.09□□□□□ -0.15
LIG1-213ENST00000596672 PRAMEF22A3QJZ6 481 aa14.09□□□□□ -0.15
LIG1-213ENST00000596672 U2AF1L5P0DN76 240 aaPredicted RBP14.09□□□□□ -0.15
LIG1-213ENST00000596672 U2AF1Q01081 240 aaKnown RBP eCLIP14.09□□□□□ -0.15
LIG1-213ENST00000596672 DPEP1P16444 411 aa14.08□□□□□ -0.16
LIG1-213ENST00000596672 USPL1Q5W0Q7 1092 aa14.08□□□□□ -0.16
LIG1-213ENST00000596672 ZNF790Q6PG37 636 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms