RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 MCM10Q7L590 875 aa18.95■□□□□ 0.62
LIG1-208ENST00000595758 RIPK4P57078 832 aa18.94■□□□□ 0.62
LIG1-208ENST00000595758 DCTN1Q14203 1278 aa18.94■□□□□ 0.62
LIG1-208ENST00000595758 NBPF14Q5TI25 921 aa18.94■□□□□ 0.62
LIG1-208ENST00000595758 CCNL1Q9UK58 526 aaPredicted RBP18.94■□□□□ 0.62
LIG1-208ENST00000595758 CEMIPQ8WUJ3 1361 aa18.93■□□□□ 0.62
LIG1-208ENST00000595758 ADAMTS7Q9UKP4 1686 aa18.93■□□□□ 0.62
LIG1-208ENST00000595758 MRC1P22897 1456 aa18.93■□□□□ 0.62
LIG1-208ENST00000595758 KCNQ4P56696 695 aa18.93■□□□□ 0.62
LIG1-208ENST00000595758 LRRC4BQ9NT99 713 aa18.93■□□□□ 0.62
LIG1-208ENST00000595758 RRP7AQ9Y3A4 280 aaKnown RBP18.93■□□□□ 0.62
LIG1-208ENST00000595758 RREB1Q92766 1687 aa18.92■□□□□ 0.62
LIG1-208ENST00000595758 LOC102724428A0A0B4J2F2 783 aa18.91■□□□□ 0.62
LIG1-208ENST00000595758 CCER2I3L3R5 266 aa18.91■□□□□ 0.62
LIG1-208ENST00000595758 SIK1P57059 783 aa18.91■□□□□ 0.62
LIG1-208ENST00000595758 NEUROD2Q15784 382 aa18.91■□□□□ 0.62
LIG1-208ENST00000595758 APAF1O14727 1248 aa18.9■□□□□ 0.62
LIG1-208ENST00000595758 LMOD3Q0VAK6 560 aa18.9■□□□□ 0.62
LIG1-208ENST00000595758 SLC39A6Q13433 755 aa18.9■□□□□ 0.62
LIG1-208ENST00000595758 FAM9BQ8IZU0 186 aa18.9■□□□□ 0.62
LIG1-208ENST00000595758 RBM42Q9BTD8 480 aaKnown RBP18.9■□□□□ 0.62
LIG1-208ENST00000595758 LY75O60449 1722 aa18.89■□□□□ 0.61
LIG1-208ENST00000595758 NUP188Q5SRE5 1749 aa18.89■□□□□ 0.61
LIG1-208ENST00000595758 PTCD1O75127 700 aaKnown RBP18.89■□□□□ 0.61
LIG1-208ENST00000595758 HMGB2P26583 209 aaKnown RBP18.89■□□□□ 0.61
LIG1-208ENST00000595758 THUMPD2Q9BTF0 503 aaKnown RBP18.89■□□□□ 0.61
LIG1-208ENST00000595758 VIRMAQ69YN4 1812 aaKnown RBP18.88■□□□□ 0.61
LIG1-208ENST00000595758 ATP6V1AP38606 617 aa18.88■□□□□ 0.61
LIG1-208ENST00000595758 MIER1Q8N108 512 aa18.88■□□□□ 0.61
LIG1-208ENST00000595758 ANO8Q9HCE9 1232 aaPredicted RBP18.88■□□□□ 0.61
LIG1-208ENST00000595758 STK32BQ9NY57 414 aa18.88■□□□□ 0.61
LIG1-208ENST00000595758 BTBD11A6QL63 1104 aa18.87■□□□□ 0.61
LIG1-208ENST00000595758 R3HDM1Q15032 1099 aaKnown RBP18.87■□□□□ 0.61
LIG1-208ENST00000595758 TAF7Q15545 349 aaPredicted RBP18.87■□□□□ 0.61
LIG1-208ENST00000595758 TTC5Q8N0Z6 440 aa18.87■□□□□ 0.61
LIG1-208ENST00000595758 DLG5Q8TDM6 1919 aa18.87■□□□□ 0.61
LIG1-208ENST00000595758 PSDA5PKW4 1024 aaPredicted RBP18.86■□□□□ 0.61
LIG1-208ENST00000595758 ZNF790Q6PG37 636 aa18.86■□□□□ 0.61
LIG1-208ENST00000595758 SLC4A9Q96Q91 983 aa18.86■□□□□ 0.61
LIG1-208ENST00000595758 TRIM35Q9UPQ4 493 aa18.86■□□□□ 0.61
LIG1-208ENST00000595758 ITPK1Q13572 414 aa18.85■□□□□ 0.61
LIG1-208ENST00000595758 SLC15A2Q16348 729 aa18.85■□□□□ 0.61
LIG1-208ENST00000595758 AKT1S1Q96B36 256 aa18.84■□□□□ 0.61
LIG1-208ENST00000595758 ZNF827Q17R98 1081 aa18.83■□□□□ 0.6
LIG1-208ENST00000595758 MIS18AQ9NYP9 233 aa18.83■□□□□ 0.6
LIG1-208ENST00000595758 SIPA1L3O60292 1781 aaPredicted RBP18.83■□□□□ 0.6
LIG1-208ENST00000595758 KCNQ3O43525 872 aa18.82■□□□□ 0.6
LIG1-208ENST00000595758 LINC00116Q8NCU8 138 aa18.82■□□□□ 0.6
LIG1-208ENST00000595758 ZNF496Q96IT1 587 aaPredicted RBP18.82■□□□□ 0.6
LIG1-208ENST00000595758 PAPPAQ13219 1627 aa18.82■□□□□ 0.6
LIG1-208ENST00000595758 SENP3-EIF4A1A0A087X0R7 540 aa18.81■□□□□ 0.6
LIG1-208ENST00000595758 VSIG10Q8N0Z9 540 aa18.81■□□□□ 0.6
LIG1-208ENST00000595758 FMNL2Q96PY5 1086 aa18.81■□□□□ 0.6
LIG1-208ENST00000595758 TFCP2L1Q9NZI6 479 aa18.81■□□□□ 0.6
LIG1-208ENST00000595758 KCPQ6ZWJ8 1503 aa18.8■□□□□ 0.6
LIG1-208ENST00000595758 AK7Q96M32 723 aa18.8■□□□□ 0.6
LIG1-208ENST00000595758 DNAJC10Q8IXB1 793 aa18.79■□□□□ 0.6
LIG1-208ENST00000595758 C5P01031 1676 aa18.79■□□□□ 0.6
LIG1-208ENST00000595758 CALD1Q05682 793 aaKnown RBP18.78■□□□□ 0.6
LIG1-208ENST00000595758 NCBP3Q53F19 620 aaKnown RBP18.78■□□□□ 0.6
LIG1-208ENST00000595758 BABAM1Q9NWV8 329 aa18.78■□□□□ 0.6
LIG1-208ENST00000595758 TSPYL4Q9UJ04 414 aa18.78■□□□□ 0.6
LIG1-208ENST00000595758 ZNF831Q5JPB2 1677 aa18.78■□□□□ 0.6
LIG1-208ENST00000595758 HEG1Q9ULI3 1381 aa18.78■□□□□ 0.6
LIG1-208ENST00000595758 TAF1LQ8IZX4 1826 aa18.77■□□□□ 0.6
LIG1-208ENST00000595758 CCDC27Q2M243 656 aa18.77■□□□□ 0.6
LIG1-208ENST00000595758 RC3H1Q5TC82 1133 aaKnown RBP18.77■□□□□ 0.6
LIG1-208ENST00000595758 TEX13AQ9BXU3 409 aaPredicted RBP18.77■□□□□ 0.6
LIG1-208ENST00000595758 LAS1LQ9Y4W2 734 aaKnown RBP18.77■□□□□ 0.6
LIG1-208ENST00000595758 CNTNAP4Q9C0A0 1308 aa18.76■□□□□ 0.59
LIG1-208ENST00000595758 GNPATO15228 680 aa18.76■□□□□ 0.59
LIG1-208ENST00000595758 SALL2Q9Y467 1007 aaPredicted RBP18.76■□□□□ 0.59
LIG1-208ENST00000595758 C4BP0C0L5 1744 aa18.76■□□□□ 0.59
LIG1-208ENST00000595758 UBR2Q8IWV8 1755 aa18.76■□□□□ 0.59
LIG1-208ENST00000595758 CHL1O00533 1208 aa18.75■□□□□ 0.59
LIG1-208ENST00000595758 STARD3NLO95772 234 aa18.75■□□□□ 0.59
LIG1-208ENST00000595758 CYP19A1P11511 503 aaPredicted RBP18.75■□□□□ 0.59
LIG1-208ENST00000595758 CRKLP46109 303 aaKnown RBP18.75■□□□□ 0.59
LIG1-208ENST00000595758 WWC1Q8IX03 1113 aa18.75■□□□□ 0.59
LIG1-208ENST00000595758 PDGFDQ9GZP0 370 aaPredicted RBP18.75■□□□□ 0.59
LIG1-208ENST00000595758 PNPLA7Q6ZV29 1317 aa18.74■□□□□ 0.59
LIG1-208ENST00000595758 SNRPA1P09661 255 aaKnown RBP18.74■□□□□ 0.59
LIG1-208ENST00000595758 EIF4A1P60842 406 aaKnown RBP18.74■□□□□ 0.59
LIG1-208ENST00000595758 NGEFQ8N5V2 710 aa18.74■□□□□ 0.59
LIG1-208ENST00000595758 FLAD1Q8NFF5 587 aa18.74■□□□□ 0.59
LIG1-208ENST00000595758 CFAP44Q96MT7 982 aa18.74■□□□□ 0.59
LIG1-208ENST00000595758 MSH5O43196 834 aa18.73■□□□□ 0.59
LIG1-208ENST00000595758 INTS5Q6P9B9 1019 aaKnown RBP18.73■□□□□ 0.59
LIG1-208ENST00000595758 CCDC87Q9NVE4 849 aa18.73■□□□□ 0.59
LIG1-208ENST00000595758 IFT57Q9NWB7 429 aa18.73■□□□□ 0.59
LIG1-208ENST00000595758 RTCBQ9Y3I0 505 aaKnown RBP18.73■□□□□ 0.59
LIG1-208ENST00000595758 TJP1Q07157 1748 aa18.73■□□□□ 0.59
LIG1-208ENST00000595758 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.72■□□□□ 0.59
LIG1-208ENST00000595758 RPS6KA4O75676 772 aa18.72■□□□□ 0.59
LIG1-208ENST00000595758 PHF14O94880 888 aa18.72■□□□□ 0.59
LIG1-208ENST00000595758 SSFA2P28290 1259 aa18.72■□□□□ 0.59
LIG1-208ENST00000595758 GNAI1P63096 354 aa18.72■□□□□ 0.59
LIG1-208ENST00000595758 SMIM5Q71RC9 77 aa18.72■□□□□ 0.59
LIG1-208ENST00000595758 AMIGO3Q86WK7 504 aa18.72■□□□□ 0.59
LIG1-208ENST00000595758 COL23A1Q86Y22 540 aaPredicted RBP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms