RNA–Protein interactions for RNA: ENST00000595659.5

CCDC9-202, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 356 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-202ENST00000595659 MTHFSP49914 203 aa23.19■■□□□ 1.3
CCDC9-202ENST00000595659 AMOTQ4VCS5 1084 aa23.19■■□□□ 1.3
CCDC9-202ENST00000595659 RBM42Q9BTD8 480 aaKnown RBP23.19■■□□□ 1.3
CCDC9-202ENST00000595659 ITGB4P16144 1822 aa23.18■■□□□ 1.3
CCDC9-202ENST00000595659 GNPATO15228 680 aa23.18■■□□□ 1.3
CCDC9-202ENST00000595659 CABP4P57796 275 aa23.18■■□□□ 1.3
CCDC9-202ENST00000595659 C4BP0C0L5 1744 aa23.17■■□□□ 1.3
CCDC9-202ENST00000595659 PER1O15534 1290 aaPredicted RBP23.17■■□□□ 1.3
CCDC9-202ENST00000595659 C1orf141Q5JVX7 400 aa23.17■■□□□ 1.3
CCDC9-202ENST00000595659 SLC4A9Q96Q91 983 aa23.17■■□□□ 1.3
CCDC9-202ENST00000595659 UTRNP46939 3433 aa23.17■■□□□ 1.3
CCDC9-202ENST00000595659 ZNF784Q8NCA9 323 aaPredicted RBP23.16■■□□□ 1.3
CCDC9-202ENST00000595659 KDM6AO15550 1401 aaPredicted RBP23.16■■□□□ 1.3
CCDC9-202ENST00000595659 SSFA2P28290 1259 aa23.15■■□□□ 1.3
CCDC9-202ENST00000595659 PLEKHG2Q9H7P9 1386 aa23.14■■□□□ 1.3
CCDC9-202ENST00000595659 HMOX1P09601 288 aa23.14■■□□□ 1.29
CCDC9-202ENST00000595659 YBX3P16989 372 aaKnown RBP eCLIP23.13■■□□□ 1.29
CCDC9-202ENST00000595659 NFATC2IPQ8NCF5 419 aa23.13■■□□□ 1.29
CCDC9-202ENST00000595659 COL24A1Q17RW2 1714 aa23.13■■□□□ 1.29
CCDC9-202ENST00000595659 PTCD1O75127 700 aaKnown RBP23.12■■□□□ 1.29
CCDC9-202ENST00000595659 CD2APQ9Y5K6 639 aa23.11■■□□□ 1.29
CCDC9-202ENST00000595659 KDRP35968 1356 aa23.11■■□□□ 1.29
CCDC9-202ENST00000595659 TAF1LQ8IZX4 1826 aa23.1■■□□□ 1.29
CCDC9-202ENST00000595659 WWC3Q9ULE0 1092 aa23.1■■□□□ 1.29
CCDC9-202ENST00000595659 RTCBQ9Y3I0 505 aaKnown RBP23.09■■□□□ 1.29
CCDC9-202ENST00000595659 DIAPH1O60610 1272 aaKnown RBP23.08■■□□□ 1.29
CCDC9-202ENST00000595659 TRAPPC3LQ5T215 181 aa23.08■■□□□ 1.29
CCDC9-202ENST00000595659 LGR6Q9HBX8 967 aa23.08■■□□□ 1.29
CCDC9-202ENST00000595659 AKAP4Q5JQC9 854 aa23.06■■□□□ 1.28
CCDC9-202ENST00000595659 ARHGEF1Q92888 912 aaKnown RBP23.06■■□□□ 1.28
CCDC9-202ENST00000595659 GRIN3BO60391 1043 aa23.05■■□□□ 1.28
CCDC9-202ENST00000595659 MMP10P09238 476 aa23.05■■□□□ 1.28
CCDC9-202ENST00000595659 RC3H1Q5TC82 1133 aaKnown RBP23.04■■□□□ 1.28
CCDC9-202ENST00000595659 GOLGB1Q14789 3259 aaKnown RBP23.03■■□□□ 1.28
CCDC9-202ENST00000595659 UBR3Q6ZT12 1888 aa23.03■■□□□ 1.28
CCDC9-202ENST00000595659 MTHFSDQ2M296 383 aaKnown RBP23.03■■□□□ 1.28
CCDC9-202ENST00000595659 CNTNAP4Q9C0A0 1308 aa23.03■■□□□ 1.28
CCDC9-202ENST00000595659 RPS6KA4O75676 772 aa23.02■■□□□ 1.28
CCDC9-202ENST00000595659 U2SURPO15042 1029 aaKnown RBP23.01■■□□□ 1.27
CCDC9-202ENST00000595659 RNMTO43148 476 aaKnown RBP23.01■■□□□ 1.27
CCDC9-202ENST00000595659 RFC4P35249 363 aa23.01■■□□□ 1.27
CCDC9-202ENST00000595659 SLC39A6Q13433 755 aa23.01■■□□□ 1.27
CCDC9-202ENST00000595659 SLC52A2Q9HAB3 445 aa23.01■■□□□ 1.27
CCDC9-202ENST00000595659 CRKLP46109 303 aaKnown RBP23■■□□□ 1.27
CCDC9-202ENST00000595659 ADRA2BP18089 450 aa22.99■■□□□ 1.27
CCDC9-202ENST00000595659 NLGN1Q8N2Q7 840 aa22.99■■□□□ 1.27
CCDC9-202ENST00000595659 GYS1P13807 737 aa22.98■■□□□ 1.27
CCDC9-202ENST00000595659 DNAJC10Q8IXB1 793 aa22.98■■□□□ 1.27
CCDC9-202ENST00000595659 SRP68Q9UHB9 627 aaKnown RBP22.98■■□□□ 1.27
CCDC9-202ENST00000595659 NPC1L1Q9UHC9 1359 aa22.98■■□□□ 1.27
CCDC9-202ENST00000595659 INTS5Q6P9B9 1019 aaKnown RBP22.95■■□□□ 1.26
CCDC9-202ENST00000595659 COL3A1P02461 1466 aaPredicted RBP22.93■■□□□ 1.26
CCDC9-202ENST00000595659 PARP3Q9Y6F1 533 aa22.93■■□□□ 1.26
CCDC9-202ENST00000595659 A0A0G2JLW4 131 aa22.92■■□□□ 1.26
CCDC9-202ENST00000595659 FKBP8Q14318 412 aa22.92■■□□□ 1.26
CCDC9-202ENST00000595659 CHD4Q14839 1912 aa22.91■■□□□ 1.26
CCDC9-202ENST00000595659 CCDC87Q9NVE4 849 aa22.91■■□□□ 1.26
CCDC9-202ENST00000595659 CYP19A1P11511 503 aaPredicted RBP22.9■■□□□ 1.26
CCDC9-202ENST00000595659 C1QTNF8P60827 252 aa22.9■■□□□ 1.26
CCDC9-202ENST00000595659 ZNF831Q5JPB2 1677 aa22.9■■□□□ 1.26
CCDC9-202ENST00000595659 CICQ96RK0 1608 aaPredicted RBP22.9■■□□□ 1.26
CCDC9-202ENST00000595659 USP42Q9H9J4 1324 aaKnown RBP22.89■■□□□ 1.26
CCDC9-202ENST00000595659 COL5A3P25940 1745 aaPredicted RBP22.89■■□□□ 1.26
CCDC9-202ENST00000595659 IL17REQ8NFR9 667 aa22.89■■□□□ 1.25
CCDC9-202ENST00000595659 PXDNLA1KZ92 1463 aa22.88■■□□□ 1.25
CCDC9-202ENST00000595659 GIGYF1O75420 1035 aaPredicted RBP22.88■■□□□ 1.25
CCDC9-202ENST00000595659 DPEP1P16444 411 aa22.88■■□□□ 1.25
CCDC9-202ENST00000595659 TGFB2P61812 414 aa22.88■■□□□ 1.25
CCDC9-202ENST00000595659 PHACTR3Q96KR7 559 aa22.88■■□□□ 1.25
CCDC9-202ENST00000595659 CFAP53Q96M91 514 aa22.88■■□□□ 1.25
CCDC9-202ENST00000595659 BCS1LQ9Y276 419 aa22.88■■□□□ 1.25
CCDC9-202ENST00000595659 MRC1P22897 1456 aa22.87■■□□□ 1.25
CCDC9-202ENST00000595659 GNAT3A8MTJ3 354 aa22.87■■□□□ 1.25
CCDC9-202ENST00000595659 PPP2R1AP30153 589 aa22.87■■□□□ 1.25
CCDC9-202ENST00000595659 PRKAR2BP31323 418 aa22.87■■□□□ 1.25
CCDC9-202ENST00000595659 DDR1Q08345 913 aa22.87■■□□□ 1.25
CCDC9-202ENST00000595659 USPL1Q5W0Q7 1092 aa22.87■■□□□ 1.25
CCDC9-202ENST00000595659 GAS2L2Q8NHY3 880 aa22.87■■□□□ 1.25
CCDC9-202ENST00000595659 ZNF526Q8TF50 670 aaPredicted RBP22.87■■□□□ 1.25
CCDC9-202ENST00000595659 ZBTB1Q9Y2K1 713 aa22.87■■□□□ 1.25
CCDC9-202ENST00000595659 SCN11AQ9UI33 1791 aa22.86■■□□□ 1.25
CCDC9-202ENST00000595659 SOS1Q07889 1333 aaPredicted RBP22.86■■□□□ 1.25
CCDC9-202ENST00000595659 C10orf71Q711Q0 1435 aa22.86■■□□□ 1.25
CCDC9-202ENST00000595659 ATP10DQ9P241 1426 aa22.86■■□□□ 1.25
CCDC9-202ENST00000595659 ZPR1O75312 459 aa22.86■■□□□ 1.25
CCDC9-202ENST00000595659 TJP1Q07157 1748 aa22.85■■□□□ 1.25
CCDC9-202ENST00000595659 MYH14Q7Z406 1995 aaKnown RBP22.85■■□□□ 1.25
CCDC9-202ENST00000595659 TEFQ10587 303 aa22.85■■□□□ 1.25
CCDC9-202ENST00000595659 TTC5Q8N0Z6 440 aa22.85■■□□□ 1.25
CCDC9-202ENST00000595659 RSPH6AQ9H0K4 717 aa22.85■■□□□ 1.25
CCDC9-202ENST00000595659 KCPQ6ZWJ8 1503 aa22.84■■□□□ 1.25
CCDC9-202ENST00000595659 CANXP27824 592 aaKnown RBP22.84■■□□□ 1.25
CCDC9-202ENST00000595659 SENP3-EIF4A1A0A087X0R7 540 aa22.83■■□□□ 1.25
CCDC9-202ENST00000595659 U2AF1L5P0DN76 240 aaPredicted RBP22.83■■□□□ 1.25
CCDC9-202ENST00000595659 U2AF1Q01081 240 aaKnown RBP eCLIP22.83■■□□□ 1.25
CCDC9-202ENST00000595659 ZNF496Q96IT1 587 aaPredicted RBP22.83■■□□□ 1.25
CCDC9-202ENST00000595659 NUDCQ9Y266 331 aa22.83■■□□□ 1.25
CCDC9-202ENST00000595659 FCHSD2O94868 740 aa22.82■■□□□ 1.24
CCDC9-202ENST00000595659 TM4SF1P30408 202 aa22.82■■□□□ 1.24
CCDC9-202ENST00000595659 VSIG10Q8N0Z9 540 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms