RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 C20orf194Q5TEA3 1177 aa12.17□□□□□ -0.46
VPS25-205ENST00000590339 CRBNQ96SW2 442 aa12.17□□□□□ -0.46
VPS25-205ENST00000590339 EYA1Q99502 592 aa12.17□□□□□ -0.46
VPS25-205ENST00000590339 PDGFDQ9GZP0 370 aaPredicted RBP12.17□□□□□ -0.46
VPS25-205ENST00000590339 MEGF6O75095 1541 aa12.16□□□□□ -0.46
VPS25-205ENST00000590339 BCAR3O75815 825 aa12.16□□□□□ -0.46
VPS25-205ENST00000590339 ZNF853P0CG23 659 aa12.16□□□□□ -0.46
VPS25-205ENST00000590339 CALD1Q05682 793 aaKnown RBP12.16□□□□□ -0.46
VPS25-205ENST00000590339 SULT6B1Q6IMI4 303 aa12.16□□□□□ -0.46
VPS25-205ENST00000590339 SRCAPQ6ZRS2 3230 aa12.15□□□□□ -0.46
VPS25-205ENST00000590339 ZBTB7AO95365 584 aa12.15□□□□□ -0.46
VPS25-205ENST00000590339 SLC15A2Q16348 729 aa12.15□□□□□ -0.46
VPS25-205ENST00000590339 TSR2Q969E8 191 aaKnown RBP12.15□□□□□ -0.46
VPS25-205ENST00000590339 SPON1Q9HCB6 807 aa12.15□□□□□ -0.46
VPS25-205ENST00000590339 LRRC4BQ9NT99 713 aa12.15□□□□□ -0.46
VPS25-205ENST00000590339 IFT57Q9NWB7 429 aa12.15□□□□□ -0.46
VPS25-205ENST00000590339 PPP1R1BQ9UD71 204 aaPredicted RBP12.15□□□□□ -0.46
VPS25-205ENST00000590339 CYP27B1O15528 508 aa12.14□□□□□ -0.47
VPS25-205ENST00000590339 PDE3AQ14432 1141 aa12.14□□□□□ -0.47
VPS25-205ENST00000590339 MPRIPQ6WCQ1 1025 aa12.14□□□□□ -0.47
VPS25-205ENST00000590339 CCDC136Q96JN2 1154 aa12.14□□□□□ -0.47
VPS25-205ENST00000590339 ATF5Q9Y2D1 282 aaPredicted RBP12.14□□□□□ -0.47
VPS25-205ENST00000590339 EXOSC9Q06265 439 aaKnown RBP12.13□□□□□ -0.47
VPS25-205ENST00000590339 SPG7Q9UQ90 795 aa12.13□□□□□ -0.47
VPS25-205ENST00000590339 PCDH11XQ9BZA7 1347 aa12.12□□□□□ -0.47
VPS25-205ENST00000590339 PCDH11YQ9BZA8 1340 aa12.12□□□□□ -0.47
VPS25-205ENST00000590339 WNK3Q9BYP7 1800 aa12.12□□□□□ -0.47
VPS25-205ENST00000590339 GNAI1P63096 354 aa12.12□□□□□ -0.47
VPS25-205ENST00000590339 TSHZ2Q9NRE2 1034 aa12.12□□□□□ -0.47
VPS25-205ENST00000590339 ADAMTS7Q9UKP4 1686 aa12.12□□□□□ -0.47
VPS25-205ENST00000590339 VIRMAQ69YN4 1812 aaKnown RBP12.11□□□□□ -0.47
VPS25-205ENST00000590339 ZNF827Q17R98 1081 aa12.11□□□□□ -0.47
VPS25-205ENST00000590339 ZNF428Q96B54 188 aa12.11□□□□□ -0.47
VPS25-205ENST00000590339 THUMPD2Q9BTF0 503 aaKnown RBP12.11□□□□□ -0.47
VPS25-205ENST00000590339 CCNL1Q9UK58 526 aaPredicted RBP12.11□□□□□ -0.47
VPS25-205ENST00000590339 BRPF1P55201 1214 aaPredicted RBP12.1□□□□□ -0.47
VPS25-205ENST00000590339 SLC27A3Q5K4L6 730 aa12.1□□□□□ -0.47
VPS25-205ENST00000590339 CFAP44Q96MT7 982 aa12.1□□□□□ -0.47
VPS25-205ENST00000590339 KDM3BQ7LBC6 1761 aa12.1□□□□□ -0.47
VPS25-205ENST00000590339 SBF2Q86WG5 1849 aa12.09□□□□□ -0.47
VPS25-205ENST00000590339 NUP188Q5SRE5 1749 aa12.09□□□□□ -0.47
VPS25-205ENST00000590339 ALDH1L2Q3SY69 923 aa12.09□□□□□ -0.47
VPS25-205ENST00000590339 GAS2L2Q8NHY3 880 aa12.09□□□□□ -0.47
VPS25-205ENST00000590339 MBIPQ9NS73 344 aa12.09□□□□□ -0.47
VPS25-205ENST00000590339 TFCP2L1Q9NZI6 479 aa12.09□□□□□ -0.47
VPS25-205ENST00000590339 KDM2BQ8NHM5 1336 aa12.09□□□□□ -0.47
VPS25-205ENST00000590339 PLEKHG2Q9H7P9 1386 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 RREB1Q92766 1687 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 MSH5O43196 834 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 MTHFSDQ2M296 383 aaKnown RBP12.08□□□□□ -0.48
VPS25-205ENST00000590339 IFNL2Q8IZJ0 200 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 SSH1Q8WYL5 1049 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 PIGBQ92521 554 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 AKT1S1Q96B36 256 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 PKD1L3Q7Z443 1732 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 KIF16BQ96L93 1317 aa12.08□□□□□ -0.48
VPS25-205ENST00000590339 SIPA1L3O60292 1781 aaPredicted RBP12.07□□□□□ -0.48
VPS25-205ENST00000590339 MAP3K5Q99683 1374 aa12.07□□□□□ -0.48
VPS25-205ENST00000590339 HTATSF1O43719 755 aaKnown RBP12.07□□□□□ -0.48
VPS25-205ENST00000590339 PHKG2P15735 406 aa12.07□□□□□ -0.48
VPS25-205ENST00000590339 PLEKHO1Q53GL0 409 aaPredicted RBP12.07□□□□□ -0.48
VPS25-205ENST00000590339 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS25-205ENST00000590339 KAT6BQ8WYB5 2073 aa12.07□□□□□ -0.48
VPS25-205ENST00000590339 NHSQ6T4R5 1651 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 N4BP2Q86UW6 1770 aaPredicted RBP12.06□□□□□ -0.48
VPS25-205ENST00000590339 CHL1O00533 1208 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 CANXP27824 592 aaKnown RBP12.06□□□□□ -0.48
VPS25-205ENST00000590339 PTGER2P43116 358 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 AAMPQ13685 434 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 DCTN1Q14203 1278 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 NKX1-1Q15270 411 aaPredicted RBP12.06□□□□□ -0.48
VPS25-205ENST00000590339 ZKSCAN2Q63HK3 967 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 PANK1Q8TE04 598 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 BCL2L13Q9BXK5 485 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 MTFR1LQ9H019 292 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 SMC4Q9NTJ3 1288 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 TMOD3Q9NYL9 352 aa12.06□□□□□ -0.48
VPS25-205ENST00000590339 VAMP4O75379 141 aa12.05□□□□□ -0.48
VPS25-205ENST00000590339 RLBP1P12271 317 aa12.05□□□□□ -0.48
VPS25-205ENST00000590339 ZNF530Q6P9A1 599 aaPredicted RBP12.05□□□□□ -0.48
VPS25-205ENST00000590339 TNNQ9UQP3 1299 aa12.05□□□□□ -0.48
VPS25-205ENST00000590339 CEMIPQ8WUJ3 1361 aa12.05□□□□□ -0.48
VPS25-205ENST00000590339 PALLDQ8WX93 1383 aa12.05□□□□□ -0.48
VPS25-205ENST00000590339 LRP5O75197 1615 aa12.04□□□□□ -0.48
VPS25-205ENST00000590339 MS4A1P11836 297 aa12.04□□□□□ -0.48
VPS25-205ENST00000590339 MCM10Q7L590 875 aa12.04□□□□□ -0.48
VPS25-205ENST00000590339 FRAT1Q92837 279 aaPredicted RBP12.04□□□□□ -0.48
VPS25-205ENST00000590339 SMARCC1Q92922 1105 aaPredicted RBP12.04□□□□□ -0.48
VPS25-205ENST00000590339 ASAP1Q9ULH1 1129 aa12.04□□□□□ -0.48
VPS25-205ENST00000590339 PNPLA7Q6ZV29 1317 aa12.04□□□□□ -0.48
VPS25-205ENST00000590339 BTAF1O14981 1849 aa12.03□□□□□ -0.48
VPS25-205ENST00000590339 TRIM27P14373 513 aa12.03□□□□□ -0.48
VPS25-205ENST00000590339 AMOTQ4VCS5 1084 aa12.03□□□□□ -0.48
VPS25-205ENST00000590339 C1orf141Q5JVX7 400 aa12.03□□□□□ -0.48
VPS25-205ENST00000590339 SMIM5Q71RC9 77 aa12.03□□□□□ -0.48
VPS25-205ENST00000590339 CENPQQ7L2Z9 268 aaPredicted RBP12.03□□□□□ -0.48
VPS25-205ENST00000590339 KLHL34Q8N239 644 aa12.03□□□□□ -0.48
VPS25-205ENST00000590339 TSPYL6Q8N831 410 aa12.03□□□□□ -0.48
VPS25-205ENST00000590339 CLUAP1Q96AJ1 413 aa12.03□□□□□ -0.48
VPS25-205ENST00000590339 LAS1LQ9Y4W2 734 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms