RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 ASAP1Q9ULH1 1129 aa28.16■■■□□ 2.1
ATG4D-212ENST00000590096 HTATSF1O43719 755 aaKnown RBP28.15■■■□□ 2.1
ATG4D-212ENST00000590096 TEFQ10587 303 aa28.15■■■□□ 2.1
ATG4D-212ENST00000590096 IL17REQ8NFR9 667 aa28.15■■■□□ 2.1
ATG4D-212ENST00000590096 RUNDC1Q96C34 613 aa28.15■■■□□ 2.1
ATG4D-212ENST00000590096 DLG5Q8TDM6 1919 aa28.14■■■□□ 2.1
ATG4D-212ENST00000590096 ATG3Q9NT62 314 aa28.14■■■□□ 2.1
ATG4D-212ENST00000590096 DIEXFQ68CQ4 756 aaKnown RBP28.12■■■□□ 2.09
ATG4D-212ENST00000590096 LRRC4BQ9NT99 713 aa28.12■■■□□ 2.09
ATG4D-212ENST00000590096 CEMIPQ8WUJ3 1361 aa28.11■■■□□ 2.09
ATG4D-212ENST00000590096 MCM10Q7L590 875 aa28.11■■■□□ 2.09
ATG4D-212ENST00000590096 HMGB2P26583 209 aaKnown RBP28.1■■■□□ 2.09
ATG4D-212ENST00000590096 KCNQ4P56696 695 aa28.1■■■□□ 2.09
ATG4D-212ENST00000590096 PNISRQ8TF01 805 aaKnown RBP28.1■■■□□ 2.09
ATG4D-212ENST00000590096 LOC102724428A0A0B4J2F2 783 aa28.09■■■□□ 2.09
ATG4D-212ENST00000590096 SIK1P57059 783 aa28.09■■■□□ 2.09
ATG4D-212ENST00000590096 STK32BQ9NY57 414 aa28.09■■■□□ 2.09
ATG4D-212ENST00000590096 PAPPAQ13219 1627 aa28.08■■■□□ 2.09
ATG4D-212ENST00000590096 TMPOP42166 694 aaKnown RBP28.08■■■□□ 2.09
ATG4D-212ENST00000590096 RIPK4P57078 832 aa28.08■■■□□ 2.09
ATG4D-212ENST00000590096 DCTN1Q14203 1278 aa28.08■■■□□ 2.09
ATG4D-212ENST00000590096 RBM42Q9BTD8 480 aaKnown RBP28.08■■■□□ 2.09
ATG4D-212ENST00000590096 SIPA1L3O60292 1781 aaPredicted RBP28.07■■■□□ 2.08
ATG4D-212ENST00000590096 R3HDM1Q15032 1099 aaKnown RBP28.07■■■□□ 2.08
ATG4D-212ENST00000590096 ANO8Q9HCE9 1232 aaPredicted RBP28.07■■■□□ 2.08
ATG4D-212ENST00000590096 PSDA5PKW4 1024 aaPredicted RBP28.06■■■□□ 2.08
ATG4D-212ENST00000590096 LMOD3Q0VAK6 560 aa28.06■■■□□ 2.08
ATG4D-212ENST00000590096 C5P01031 1676 aa28.06■■■□□ 2.08
ATG4D-212ENST00000590096 ATP6V1AP38606 617 aa28.05■■■□□ 2.08
ATG4D-212ENST00000590096 NEUROD2Q15784 382 aa28.05■■■□□ 2.08
ATG4D-212ENST00000590096 RRP7AQ9Y3A4 280 aaKnown RBP28.05■■■□□ 2.08
ATG4D-212ENST00000590096 PTCD1O75127 700 aaKnown RBP28.04■■■□□ 2.08
ATG4D-212ENST00000590096 SLC39A6Q13433 755 aa28.04■■■□□ 2.08
ATG4D-212ENST00000590096 SLC15A2Q16348 729 aa28.04■■■□□ 2.08
ATG4D-212ENST00000590096 TTC5Q8N0Z6 440 aa28.04■■■□□ 2.08
ATG4D-212ENST00000590096 TAF1LQ8IZX4 1826 aa28.03■■■□□ 2.08
ATG4D-212ENST00000590096 BTBD11A6QL63 1104 aa28.02■■■□□ 2.08
ATG4D-212ENST00000590096 ZNF831Q5JPB2 1677 aa28.01■■■□□ 2.07
ATG4D-212ENST00000590096 APAF1O14727 1248 aa28■■■□□ 2.07
ATG4D-212ENST00000590096 ZNF827Q17R98 1081 aa28■■■□□ 2.07
ATG4D-212ENST00000590096 ZNF790Q6PG37 636 aa27.99■■■□□ 2.07
ATG4D-212ENST00000590096 FAM9BQ8IZU0 186 aa27.99■■■□□ 2.07
ATG4D-212ENST00000590096 AKT1S1Q96B36 256 aa27.99■■■□□ 2.07
ATG4D-212ENST00000590096 CCER2I3L3R5 266 aa27.98■■■□□ 2.07
ATG4D-212ENST00000590096 ITPK1Q13572 414 aa27.98■■■□□ 2.07
ATG4D-212ENST00000590096 TAF7Q15545 349 aaPredicted RBP27.98■■■□□ 2.07
ATG4D-212ENST00000590096 SLC4A9Q96Q91 983 aa27.98■■■□□ 2.07
ATG4D-212ENST00000590096 THUMPD2Q9BTF0 503 aaKnown RBP27.98■■■□□ 2.07
ATG4D-212ENST00000590096 C4BP0C0L5 1744 aa27.98■■■□□ 2.07
ATG4D-212ENST00000590096 KCPQ6ZWJ8 1503 aa27.97■■■□□ 2.07
ATG4D-212ENST00000590096 UBR2Q8IWV8 1755 aa27.97■■■□□ 2.07
ATG4D-212ENST00000590096 TFCP2L1Q9NZI6 479 aa27.97■■■□□ 2.07
ATG4D-212ENST00000590096 LINC00116Q8NCU8 138 aa27.96■■■□□ 2.07
ATG4D-212ENST00000590096 AK7Q96M32 723 aa27.95■■■□□ 2.06
ATG4D-212ENST00000590096 LRP5O75197 1615 aa27.93■■■□□ 2.06
ATG4D-212ENST00000590096 CICQ96RK0 1608 aaPredicted RBP27.93■■■□□ 2.06
ATG4D-212ENST00000590096 TJP1Q07157 1748 aa27.93■■■□□ 2.06
ATG4D-212ENST00000590096 VSIG10Q8N0Z9 540 aa27.93■■■□□ 2.06
ATG4D-212ENST00000590096 FMNL2Q96PY5 1086 aa27.93■■■□□ 2.06
ATG4D-212ENST00000590096 TRIM35Q9UPQ4 493 aa27.93■■■□□ 2.06
ATG4D-212ENST00000590096 COL5A3P25940 1745 aaPredicted RBP27.92■■■□□ 2.06
ATG4D-212ENST00000590096 QSER1Q2KHR3 1735 aa27.92■■■□□ 2.06
ATG4D-212ENST00000590096 ZNF496Q96IT1 587 aaPredicted RBP27.92■■■□□ 2.06
ATG4D-212ENST00000590096 TUBGCP6Q96RT7 1819 aa27.92■■■□□ 2.06
ATG4D-212ENST00000590096 MIS18AQ9NYP9 233 aa27.91■■■□□ 2.06
ATG4D-212ENST00000590096 KCNQ3O43525 872 aa27.9■■■□□ 2.06
ATG4D-212ENST00000590096 HEG1Q9ULI3 1381 aa27.89■■■□□ 2.06
ATG4D-212ENST00000590096 KDM3BQ7LBC6 1761 aa27.89■■■□□ 2.06
ATG4D-212ENST00000590096 DNAJC10Q8IXB1 793 aa27.89■■■□□ 2.06
ATG4D-212ENST00000590096 MIER1Q8N108 512 aa27.89■■■□□ 2.06
ATG4D-212ENST00000590096 CNTNAP4Q9C0A0 1308 aa27.89■■■□□ 2.05
ATG4D-212ENST00000590096 CASZ1Q86V15 1759 aa27.88■■■□□ 2.05
ATG4D-212ENST00000590096 GNPATO15228 680 aa27.88■■■□□ 2.05
ATG4D-212ENST00000590096 RC3H1Q5TC82 1133 aaKnown RBP27.88■■■□□ 2.05
ATG4D-212ENST00000590096 PNPLA7Q6ZV29 1317 aa27.88■■■□□ 2.05
ATG4D-212ENST00000590096 TSPYL4Q9UJ04 414 aa27.87■■■□□ 2.05
ATG4D-212ENST00000590096 UBR3Q6ZT12 1888 aa27.87■■■□□ 2.05
ATG4D-212ENST00000590096 FLAD1Q8NFF5 587 aa27.86■■■□□ 2.05
ATG4D-212ENST00000590096 TEX13AQ9BXU3 409 aaPredicted RBP27.86■■■□□ 2.05
ATG4D-212ENST00000590096 BABAM1Q9NWV8 329 aa27.86■■■□□ 2.05
ATG4D-212ENST00000590096 MSH5O43196 834 aa27.85■■■□□ 2.05
ATG4D-212ENST00000590096 CRKLP46109 303 aaKnown RBP27.85■■■□□ 2.05
ATG4D-212ENST00000590096 CALD1Q05682 793 aaKnown RBP27.85■■■□□ 2.05
ATG4D-212ENST00000590096 PDGFDQ9GZP0 370 aaPredicted RBP27.85■■■□□ 2.05
ATG4D-212ENST00000590096 SENP3-EIF4A1A0A087X0R7 540 aa27.84■■■□□ 2.05
ATG4D-212ENST00000590096 PHF14O94880 888 aa27.84■■■□□ 2.05
ATG4D-212ENST00000590096 STARD3NLO95772 234 aa27.84■■■□□ 2.05
ATG4D-212ENST00000590096 SSFA2P28290 1259 aa27.84■■■□□ 2.05
ATG4D-212ENST00000590096 RTCBQ9Y3I0 505 aaKnown RBP27.84■■■□□ 2.05
ATG4D-212ENST00000590096 LAS1LQ9Y4W2 734 aaKnown RBP27.84■■■□□ 2.05
ATG4D-212ENST00000590096 CYP19A1P11511 503 aaPredicted RBP27.83■■■□□ 2.05
ATG4D-212ENST00000590096 MYH14Q7Z406 1995 aaKnown RBP27.82■■■□□ 2.04
ATG4D-212ENST00000590096 SNRPA1P09661 255 aaKnown RBP27.82■■■□□ 2.04
ATG4D-212ENST00000590096 CCDC27Q2M243 656 aa27.82■■■□□ 2.04
ATG4D-212ENST00000590096 NCBP3Q53F19 620 aaKnown RBP27.82■■■□□ 2.04
ATG4D-212ENST00000590096 CCDC87Q9NVE4 849 aa27.82■■■□□ 2.04
ATG4D-212ENST00000590096 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.81■■■□□ 2.04
ATG4D-212ENST00000590096 COL23A1Q86Y22 540 aaPredicted RBP27.81■■■□□ 2.04
ATG4D-212ENST00000590096 RPS6KA4O75676 772 aa27.8■■■□□ 2.04
ATG4D-212ENST00000590096 ZBTB7AO95365 584 aa27.8■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms