RNA–Protein interactions for RNA: ENST00000567479.1

KIFC3-231, Transcript of kinesin family member C3, human

TSL 4

Gene KIFC3, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KIFC3-231	ENST00000567479	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.66	□□□□□ -0.38
KIFC3-231	ENST00000567479	U2SURP	O15042	1029 aa	Known RBP	12.66	□□□□□ -0.38
KIFC3-231	ENST00000567479	YY1	P25490	414 aa		12.66	□□□□□ -0.38
KIFC3-231	ENST00000567479	MSL1	Q68DK7	614 aa		12.66	□□□□□ -0.38
KIFC3-231	ENST00000567479	SMIM5	Q71RC9	77 aa		12.66	□□□□□ -0.38
KIFC3-231	ENST00000567479	TOGARAM1	Q9Y4F4	1720 aa		12.65	□□□□□ -0.38
KIFC3-231	ENST00000567479	KDM6A	O15550	1401 aa	Predicted RBP	12.65	□□□□□ -0.38
KIFC3-231	ENST00000567479	GNPAT	O15228	680 aa		12.65	□□□□□ -0.38
KIFC3-231	ENST00000567479	SSFA2	P28290	1259 aa		12.65	□□□□□ -0.38
KIFC3-231	ENST00000567479	MTHFSD	Q2M296	383 aa	Known RBP	12.65	□□□□□ -0.38
KIFC3-231	ENST00000567479	AMIGO3	Q86WK7	504 aa		12.65	□□□□□ -0.38
KIFC3-231	ENST00000567479	LGR6	Q9HBX8	967 aa		12.65	□□□□□ -0.38
KIFC3-231	ENST00000567479	MAP3K5	Q99683	1374 aa		12.65	□□□□□ -0.38
KIFC3-231	ENST00000567479	ITGB4	P16144	1822 aa		12.65	□□□□□ -0.39
KIFC3-231	ENST00000567479	PTCD1	O75127	700 aa	Known RBP	12.64	□□□□□ -0.39
KIFC3-231	ENST00000567479	CFAP53	Q96M91	514 aa		12.64	□□□□□ -0.39
KIFC3-231	ENST00000567479	SLC4A9	Q96Q91	983 aa		12.64	□□□□□ -0.39
KIFC3-231	ENST00000567479	RTCB	Q9Y3I0	505 aa	Known RBP	12.64	□□□□□ -0.39
KIFC3-231	ENST00000567479	RNMT	O43148	476 aa	Known RBP	12.63	□□□□□ -0.39
KIFC3-231	ENST00000567479	GPR162	Q16538	588 aa		12.63	□□□□□ -0.39
KIFC3-231	ENST00000567479	TRAPPC3L	Q5T215	181 aa		12.63	□□□□□ -0.39
KIFC3-231	ENST00000567479	RC3H1	Q5TC82	1133 aa	Known RBP	12.63	□□□□□ -0.39
KIFC3-231	ENST00000567479	SLC52A2	Q9HAB3	445 aa		12.63	□□□□□ -0.39
KIFC3-231	ENST00000567479	QSER1	Q2KHR3	1735 aa		12.62	□□□□□ -0.39
KIFC3-231	ENST00000567479	NUDC	Q9Y266	331 aa		12.62	□□□□□ -0.39
KIFC3-231	ENST00000567479	C4B	P0C0L5	1744 aa		12.62	□□□□□ -0.39
KIFC3-231	ENST00000567479	C5	P01031	1676 aa		12.61	□□□□□ -0.39
KIFC3-231	ENST00000567479	RPS6KA4	O75676	772 aa		12.61	□□□□□ -0.39
KIFC3-231	ENST00000567479	PPP2R1A	P30153	589 aa		12.61	□□□□□ -0.39
KIFC3-231	ENST00000567479	PELP1	Q8IZL8	1130 aa	Known RBP	12.61	□□□□□ -0.39
KIFC3-231	ENST00000567479	NLGN2	Q8NFZ4	835 aa		12.61	□□□□□ -0.39
KIFC3-231	ENST00000567479	GAS2L2	Q8NHY3	880 aa		12.6	□□□□□ -0.39
KIFC3-231	ENST00000567479	ARHGEF1	Q92888	912 aa	Known RBP	12.6	□□□□□ -0.39
KIFC3-231	ENST00000567479	CD2AP	Q9Y5K6	639 aa		12.6	□□□□□ -0.39
KIFC3-231	ENST00000567479	CNTNAP4	Q9C0A0	1308 aa		12.6	□□□□□ -0.39
KIFC3-231	ENST00000567479	GNAT3	A8MTJ3	354 aa		12.59	□□□□□ -0.39
KIFC3-231	ENST00000567479	ADRA2B	P18089	450 aa		12.59	□□□□□ -0.39
KIFC3-231	ENST00000567479	RFC4	P35249	363 aa		12.59	□□□□□ -0.39
KIFC3-231	ENST00000567479	NLGN1	Q8N2Q7	840 aa		12.59	□□□□□ -0.39
KIFC3-231	ENST00000567479	TUBGCP6	Q96RT7	1819 aa		12.58	□□□□□ -0.4
KIFC3-231	ENST00000567479	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.58	□□□□□ -0.4
KIFC3-231	ENST00000567479	CRKL	P46109	303 aa	Known RBP	12.58	□□□□□ -0.4
KIFC3-231	ENST00000567479	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.58	□□□□□ -0.4
KIFC3-231	ENST00000567479	SLC39A6	Q13433	755 aa		12.58	□□□□□ -0.4
KIFC3-231	ENST00000567479	COL3A1	P02461	1466 aa	Predicted RBP	12.58	□□□□□ -0.4
KIFC3-231	ENST00000567479	TAF1L	Q8IZX4	1826 aa		12.58	□□□□□ -0.4
KIFC3-231	ENST00000567479	PRKAR2B	P31323	418 aa		12.57	□□□□□ -0.4
KIFC3-231	ENST00000567479	IL17RE	Q8NFR9	667 aa		12.57	□□□□□ -0.4
KIFC3-231	ENST00000567479	PHACTR3	Q96KR7	559 aa		12.57	□□□□□ -0.4
KIFC3-231	ENST00000567479	RSPH6A	Q9H0K4	717 aa		12.57	□□□□□ -0.4
KIFC3-231	ENST00000567479	GRIN3B	O60391	1043 aa		12.56	□□□□□ -0.4
KIFC3-231	ENST00000567479	FCHSD2	O94868	740 aa		12.56	□□□□□ -0.4
KIFC3-231	ENST00000567479	MMP10	P09238	476 aa		12.56	□□□□□ -0.4
KIFC3-231	ENST00000567479	TEF	Q10587	303 aa		12.56	□□□□□ -0.4
KIFC3-231	ENST00000567479	DNAJC10	Q8IXB1	793 aa		12.56	□□□□□ -0.4
KIFC3-231	ENST00000567479	COL24A1	Q17RW2	1714 aa		12.56	□□□□□ -0.4
KIFC3-231	ENST00000567479	GYS1	P13807	737 aa		12.55	□□□□□ -0.4
KIFC3-231	ENST00000567479	INTS5	Q6P9B9	1019 aa	Known RBP	12.55	□□□□□ -0.4
KIFC3-231	ENST00000567479	TTC5	Q8N0Z6	440 aa		12.55	□□□□□ -0.4
KIFC3-231	ENST00000567479	VSIG10	Q8N0Z9	540 aa		12.55	□□□□□ -0.4
KIFC3-231	ENST00000567479	CYP19A1	P11511	503 aa	Predicted RBP	12.54	□□□□□ -0.4
KIFC3-231	ENST00000567479	CCDC87	Q9NVE4	849 aa		12.54	□□□□□ -0.4
KIFC3-231	ENST00000567479	UBR3	Q6ZT12	1888 aa		12.53	□□□□□ -0.4
KIFC3-231	ENST00000567479	YBX3	P16989	372 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
KIFC3-231	ENST00000567479	RTF1	Q92541	710 aa	Known RBP	12.53	□□□□□ -0.4
KIFC3-231	ENST00000567479	PARP3	Q9Y6F1	533 aa		12.53	□□□□□ -0.4
KIFC3-231	ENST00000567479	ZNF831	Q5JPB2	1677 aa		12.52	□□□□□ -0.4
KIFC3-231	ENST00000567479	ZPR1	O75312	459 aa		12.52	□□□□□ -0.41
KIFC3-231	ENST00000567479	STARD3NL	O95772	234 aa		12.52	□□□□□ -0.41
KIFC3-231	ENST00000567479	NEFM	P07197	916 aa		12.52	□□□□□ -0.41
KIFC3-231	ENST00000567479	ZNF790	Q6PG37	636 aa		12.52	□□□□□ -0.41
KIFC3-231	ENST00000567479	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.52	□□□□□ -0.41
KIFC3-231	ENST00000567479	SRP68	Q9UHB9	627 aa	Known RBP	12.52	□□□□□ -0.41
KIFC3-231	ENST00000567479	SCN11A	Q9UI33	1791 aa		12.51	□□□□□ -0.41
KIFC3-231	ENST00000567479	BTBD11	A6QL63	1104 aa		12.51	□□□□□ -0.41
KIFC3-231	ENST00000567479	DDX10	Q13206	875 aa	Known RBP	12.51	□□□□□ -0.41
KIFC3-231	ENST00000567479	ZNF784	Q8NCA9	323 aa	Predicted RBP	12.51	□□□□□ -0.41
KIFC3-231	ENST00000567479	USP42	Q9H9J4	1324 aa	Known RBP	12.51	□□□□□ -0.41
KIFC3-231	ENST00000567479	MRC1	P22897	1456 aa		12.51	□□□□□ -0.41
KIFC3-231	ENST00000567479	HTATSF1	O43719	755 aa	Known RBP	12.5	□□□□□ -0.41
KIFC3-231	ENST00000567479	CANX	P27824	592 aa	Known RBP	12.5	□□□□□ -0.41
KIFC3-231	ENST00000567479	TGFB2	P61812	414 aa		12.5	□□□□□ -0.41
KIFC3-231	ENST00000567479	FKBP8	Q14318	412 aa		12.5	□□□□□ -0.41
KIFC3-231	ENST00000567479	ZNF496	Q96IT1	587 aa	Predicted RBP	12.5	□□□□□ -0.41
KIFC3-231	ENST00000567479	FMNL2	Q96PY5	1086 aa		12.5	□□□□□ -0.41
KIFC3-231	ENST00000567479	SOS1	Q07889	1333 aa	Predicted RBP	12.5	□□□□□ -0.41
KIFC3-231	ENST00000567479	CEMIP	Q8WUJ3	1361 aa		12.49	□□□□□ -0.41
KIFC3-231	ENST00000567479	RALBP1	Q15311	655 aa		12.49	□□□□□ -0.41
KIFC3-231	ENST00000567479	USPL1	Q5W0Q7	1092 aa		12.49	□□□□□ -0.41
KIFC3-231	ENST00000567479	MCM10	Q7L590	875 aa		12.49	□□□□□ -0.41
KIFC3-231	ENST00000567479	PNN	Q9H307	717 aa	Known RBP	12.49	□□□□□ -0.41
KIFC3-231	ENST00000567479	NARF	Q9UHQ1	456 aa		12.49	□□□□□ -0.41
KIFC3-231	ENST00000567479	WWC3	Q9ULE0	1092 aa		12.49	□□□□□ -0.41
KIFC3-231	ENST00000567479	ZBTB1	Q9Y2K1	713 aa		12.49	□□□□□ -0.41
KIFC3-231	ENST00000567479	HEG1	Q9ULI3	1381 aa		12.48	□□□□□ -0.41
KIFC3-231	ENST00000567479		A0A0G2JLW4	131 aa		12.48	□□□□□ -0.41
KIFC3-231	ENST00000567479	TM4SF1	P30408	202 aa		12.48	□□□□□ -0.41
KIFC3-231	ENST00000567479	KCP	Q6ZWJ8	1503 aa		12.47	□□□□□ -0.41
KIFC3-231	ENST00000567479		A0A087WZG4	1122 aa		12.47	□□□□□ -0.41
KIFC3-231	ENST00000567479	KCNQ3	O43525	872 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms