RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 NEUROD2Q15784 382 aa18.93■□□□□ 0.62
USP3-221ENST00000561442 RIPK4P57078 832 aa18.92■□□□□ 0.62
USP3-221ENST00000561442 THUMPD2Q9BTF0 503 aaKnown RBP18.92■□□□□ 0.62
USP3-221ENST00000561442 CEMIPQ8WUJ3 1361 aa18.92■□□□□ 0.62
USP3-221ENST00000561442 MRC1P22897 1456 aa18.91■□□□□ 0.62
USP3-221ENST00000561442 ITGB4P16144 1822 aa18.91■□□□□ 0.62
USP3-221ENST00000561442 SENP3-EIF4A1A0A087X0R7 540 aa18.91■□□□□ 0.62
USP3-221ENST00000561442 HTATSF1O43719 755 aaKnown RBP18.91■□□□□ 0.62
USP3-221ENST00000561442 SLC39A6Q13433 755 aa18.91■□□□□ 0.62
USP3-221ENST00000561442 SLC27A3Q5K4L6 730 aa18.91■□□□□ 0.62
USP3-221ENST00000561442 FAM9BQ8IZU0 186 aa18.91■□□□□ 0.62
USP3-221ENST00000561442 RBM42Q9BTD8 480 aaKnown RBP18.91■□□□□ 0.62
USP3-221ENST00000561442 ANO8Q9HCE9 1232 aaPredicted RBP18.91■□□□□ 0.62
USP3-221ENST00000561442 RREB1Q92766 1687 aa18.9■□□□□ 0.62
USP3-221ENST00000561442 LOC102724428A0A0B4J2F2 783 aa18.9■□□□□ 0.62
USP3-221ENST00000561442 PSDA5PKW4 1024 aaPredicted RBP18.9■□□□□ 0.62
USP3-221ENST00000561442 APAF1O14727 1248 aa18.9■□□□□ 0.62
USP3-221ENST00000561442 PTCD1O75127 700 aaKnown RBP18.9■□□□□ 0.62
USP3-221ENST00000561442 SIK1P57059 783 aa18.9■□□□□ 0.62
USP3-221ENST00000561442 RGPD3A6NKT7 1758 aaPredicted RBP18.9■□□□□ 0.62
USP3-221ENST00000561442 RGPD4Q7Z3J3 1758 aa18.9■□□□□ 0.62
USP3-221ENST00000561442 ADAMTS7Q9UKP4 1686 aa18.89■□□□□ 0.61
USP3-221ENST00000561442 SCN11AQ9UI33 1791 aa18.89■□□□□ 0.61
USP3-221ENST00000561442 R3HDM1Q15032 1099 aaKnown RBP18.89■□□□□ 0.61
USP3-221ENST00000561442 NBPF14Q5TI25 921 aa18.89■□□□□ 0.61
USP3-221ENST00000561442 MIER1Q8N108 512 aa18.89■□□□□ 0.61
USP3-221ENST00000561442 NUP188Q5SRE5 1749 aa18.88■□□□□ 0.61
USP3-221ENST00000561442 ATP6V1AP38606 617 aa18.87■□□□□ 0.61
USP3-221ENST00000561442 ZNF827Q17R98 1081 aa18.87■□□□□ 0.61
USP3-221ENST00000561442 SLC4A9Q96Q91 983 aa18.87■□□□□ 0.61
USP3-221ENST00000561442 STK32BQ9NY57 414 aa18.87■□□□□ 0.61
USP3-221ENST00000561442 BTBD11A6QL63 1104 aa18.86■□□□□ 0.61
USP3-221ENST00000561442 CCER2I3L3R5 266 aa18.86■□□□□ 0.61
USP3-221ENST00000561442 LMOD3Q0VAK6 560 aa18.86■□□□□ 0.61
USP3-221ENST00000561442 ITPK1Q13572 414 aa18.86■□□□□ 0.61
USP3-221ENST00000561442 KCNQ3O43525 872 aa18.85■□□□□ 0.61
USP3-221ENST00000561442 TTC5Q8N0Z6 440 aa18.85■□□□□ 0.61
USP3-221ENST00000561442 LINC00116Q8NCU8 138 aa18.85■□□□□ 0.61
USP3-221ENST00000561442 MIS18AQ9NYP9 233 aa18.85■□□□□ 0.61
USP3-221ENST00000561442 TRIM35Q9UPQ4 493 aa18.85■□□□□ 0.61
USP3-221ENST00000561442 TAF7Q15545 349 aaPredicted RBP18.84■□□□□ 0.61
USP3-221ENST00000561442 SLC15A2Q16348 729 aa18.84■□□□□ 0.61
USP3-221ENST00000561442 LY75O60449 1722 aa18.83■□□□□ 0.61
USP3-221ENST00000561442 ZNF790Q6PG37 636 aa18.83■□□□□ 0.6
USP3-221ENST00000561442 AKT1S1Q96B36 256 aa18.82■□□□□ 0.6
USP3-221ENST00000561442 PAPPAQ13219 1627 aa18.82■□□□□ 0.6
USP3-221ENST00000561442 ZNF496Q96IT1 587 aaPredicted RBP18.81■□□□□ 0.6
USP3-221ENST00000561442 TFCP2L1Q9NZI6 479 aa18.81■□□□□ 0.6
USP3-221ENST00000561442 KCPQ6ZWJ8 1503 aa18.8■□□□□ 0.6
USP3-221ENST00000561442 DNAJC10Q8IXB1 793 aa18.8■□□□□ 0.6
USP3-221ENST00000561442 AK7Q96M32 723 aa18.8■□□□□ 0.6
USP3-221ENST00000561442 SALL2Q9Y467 1007 aaPredicted RBP18.8■□□□□ 0.6
USP3-221ENST00000561442 DLG5Q8TDM6 1919 aa18.79■□□□□ 0.6
USP3-221ENST00000561442 FMNL2Q96PY5 1086 aa18.79■□□□□ 0.6
USP3-221ENST00000561442 LAS1LQ9Y4W2 734 aaKnown RBP18.79■□□□□ 0.6
USP3-221ENST00000561442 SRCAPQ6ZRS2 3230 aa18.78■□□□□ 0.6
USP3-221ENST00000561442 SMIM5Q71RC9 77 aa18.78■□□□□ 0.6
USP3-221ENST00000561442 PDGFDQ9GZP0 370 aaPredicted RBP18.78■□□□□ 0.6
USP3-221ENST00000561442 TSPYL4Q9UJ04 414 aa18.78■□□□□ 0.6
USP3-221ENST00000561442 VIRMAQ69YN4 1812 aaKnown RBP18.78■□□□□ 0.6
USP3-221ENST00000561442 SIPA1L3O60292 1781 aaPredicted RBP18.78■□□□□ 0.6
USP3-221ENST00000561442 HEG1Q9ULI3 1381 aa18.77■□□□□ 0.6
USP3-221ENST00000561442 GNPATO15228 680 aa18.76■□□□□ 0.59
USP3-221ENST00000561442 HMGB2P26583 209 aaKnown RBP18.76■□□□□ 0.59
USP3-221ENST00000561442 AMIGO3Q86WK7 504 aa18.76■□□□□ 0.59
USP3-221ENST00000561442 C5P01031 1676 aa18.76■□□□□ 0.59
USP3-221ENST00000561442 PHF14O94880 888 aa18.75■□□□□ 0.59
USP3-221ENST00000561442 VSIG10Q8N0Z9 540 aa18.75■□□□□ 0.59
USP3-221ENST00000561442 PNPLA7Q6ZV29 1317 aa18.74■□□□□ 0.59
USP3-221ENST00000561442 C4BP0C0L5 1744 aa18.74■□□□□ 0.59
USP3-221ENST00000561442 PRAMEF22A3QJZ6 481 aa18.74■□□□□ 0.59
USP3-221ENST00000561442 MSH5O43196 834 aa18.74■□□□□ 0.59
USP3-221ENST00000561442 CRKLP46109 303 aaKnown RBP18.74■□□□□ 0.59
USP3-221ENST00000561442 CNTNAP4Q9C0A0 1308 aa18.74■□□□□ 0.59
USP3-221ENST00000561442 CYP19A1P11511 503 aaPredicted RBP18.73■□□□□ 0.59
USP3-221ENST00000561442 EIF4A1P60842 406 aaKnown RBP18.73■□□□□ 0.59
USP3-221ENST00000561442 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.72■□□□□ 0.59
USP3-221ENST00000561442 CHL1O00533 1208 aa18.72■□□□□ 0.59
USP3-221ENST00000561442 ZBTB7AO95365 584 aa18.72■□□□□ 0.59
USP3-221ENST00000561442 RC3H1Q5TC82 1133 aaKnown RBP18.72■□□□□ 0.59
USP3-221ENST00000561442 INTS5Q6P9B9 1019 aaKnown RBP18.72■□□□□ 0.59
USP3-221ENST00000561442 WWC1Q8IX03 1113 aa18.72■□□□□ 0.59
USP3-221ENST00000561442 CCDC87Q9NVE4 849 aa18.72■□□□□ 0.59
USP3-221ENST00000561442 TJP1Q07157 1748 aa18.71■□□□□ 0.59
USP3-221ENST00000561442 UBR2Q8IWV8 1755 aa18.71■□□□□ 0.59
USP3-221ENST00000561442 STARD3NLO95772 234 aa18.71■□□□□ 0.59
USP3-221ENST00000561442 SNRPA1P09661 255 aaKnown RBP18.71■□□□□ 0.59
USP3-221ENST00000561442 CALD1Q05682 793 aaKnown RBP18.71■□□□□ 0.59
USP3-221ENST00000561442 CCDC27Q2M243 656 aa18.71■□□□□ 0.59
USP3-221ENST00000561442 COL23A1Q86Y22 540 aaPredicted RBP18.71■□□□□ 0.59
USP3-221ENST00000561442 BABAM1Q9NWV8 329 aa18.71■□□□□ 0.59
USP3-221ENST00000561442 RTCBQ9Y3I0 505 aaKnown RBP18.71■□□□□ 0.59
USP3-221ENST00000561442 CFAP44Q96MT7 982 aa18.7■□□□□ 0.58
USP3-221ENST00000561442 TEX13AQ9BXU3 409 aaPredicted RBP18.7■□□□□ 0.58
USP3-221ENST00000561442 ZBTB1Q9Y2K1 713 aa18.7■□□□□ 0.58
USP3-221ENST00000561442 USP16Q9Y5T5 823 aa18.7■□□□□ 0.58
USP3-221ENST00000561442 TAF1LQ8IZX4 1826 aa18.7■□□□□ 0.58
USP3-221ENST00000561442 ZNF831Q5JPB2 1677 aa18.69■□□□□ 0.58
USP3-221ENST00000561442 RPS6KA4O75676 772 aa18.69■□□□□ 0.58
USP3-221ENST00000561442 CANXP27824 592 aaKnown RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 265.2 ms