RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 IFNL2Q8IZJ0 200 aa24.8■■□□□ 1.56
TSPAN3-208ENST00000560514 NLGN1Q8N2Q7 840 aa24.8■■□□□ 1.56
TSPAN3-208ENST00000560514 RTCBQ9Y3I0 505 aaKnown RBP24.8■■□□□ 1.56
TSPAN3-208ENST00000560514 PXDNLA1KZ92 1463 aa24.8■■□□□ 1.56
TSPAN3-208ENST00000560514 KIF13BQ9NQT8 1826 aa24.79■■□□□ 1.56
TSPAN3-208ENST00000560514 C16orf71Q8IYS4 520 aaPredicted RBP24.79■■□□□ 1.56
TSPAN3-208ENST00000560514 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.79■■□□□ 1.56
TSPAN3-208ENST00000560514 A0A0G2JLW4 131 aa24.78■■□□□ 1.56
TSPAN3-208ENST00000560514 CCDC87Q9NVE4 849 aa24.78■■□□□ 1.56
TSPAN3-208ENST00000560514 FCHSD2O94868 740 aa24.77■■□□□ 1.56
TSPAN3-208ENST00000560514 PHKG2P15735 406 aa24.75■■□□□ 1.55
TSPAN3-208ENST00000560514 DNAJC5GQ8N7S2 189 aa24.75■■□□□ 1.55
TSPAN3-208ENST00000560514 NMRK2Q9NPI5 230 aa24.75■■□□□ 1.55
TSPAN3-208ENST00000560514 ATG3Q9NT62 314 aa24.75■■□□□ 1.55
TSPAN3-208ENST00000560514 NCAPD2Q15021 1401 aa24.75■■□□□ 1.55
TSPAN3-208ENST00000560514 EYA1Q99502 592 aa24.74■■□□□ 1.55
TSPAN3-208ENST00000560514 PARP3Q9Y6F1 533 aa24.74■■□□□ 1.55
TSPAN3-208ENST00000560514 KIAA1551Q9HCM1 1747 aa24.73■■□□□ 1.55
TSPAN3-208ENST00000560514 DPEP1P16444 411 aa24.73■■□□□ 1.55
TSPAN3-208ENST00000560514 ADRA2BP18089 450 aa24.73■■□□□ 1.55
TSPAN3-208ENST00000560514 RFC4P35249 363 aa24.73■■□□□ 1.55
TSPAN3-208ENST00000560514 RBM42Q9BTD8 480 aaKnown RBP24.73■■□□□ 1.55
TSPAN3-208ENST00000560514 C10orf71Q711Q0 1435 aa24.72■■□□□ 1.55
TSPAN3-208ENST00000560514 WASHC2AQ641Q2 1341 aa24.72■■□□□ 1.55
TSPAN3-208ENST00000560514 RBM46Q8TBY0 533 aaKnown RBP24.72■■□□□ 1.55
TSPAN3-208ENST00000560514 WDR90Q96KV7 1748 aa24.71■■□□□ 1.55
TSPAN3-208ENST00000560514 PLEKHG2Q9H7P9 1386 aa24.7■■□□□ 1.55
TSPAN3-208ENST00000560514 ARHGEF1Q92888 912 aaKnown RBP24.7■■□□□ 1.54
TSPAN3-208ENST00000560514 C4AP0C0L4 1744 aa24.69■■□□□ 1.54
TSPAN3-208ENST00000560514 C9orf131Q5VYM1 1079 aa24.69■■□□□ 1.54
TSPAN3-208ENST00000560514 CARD14Q9BXL6 1004 aa24.69■■□□□ 1.54
TSPAN3-208ENST00000560514 ANKRD26Q9UPS8 1709 aa24.69■■□□□ 1.54
TSPAN3-208ENST00000560514 KDM2BQ8NHM5 1336 aa24.68■■□□□ 1.54
TSPAN3-208ENST00000560514 RC3H1Q5TC82 1133 aaKnown RBP24.68■■□□□ 1.54
TSPAN3-208ENST00000560514 BRCA1P38398 1863 aaKnown RBP24.67■■□□□ 1.54
TSPAN3-208ENST00000560514 HSP90AB1P08238 724 aaKnown RBP24.67■■□□□ 1.54
TSPAN3-208ENST00000560514 GYS1P13807 737 aa24.67■■□□□ 1.54
TSPAN3-208ENST00000560514 FSTL1Q12841 308 aa24.67■■□□□ 1.54
TSPAN3-208ENST00000560514 PIM2Q9P1W9 311 aa24.67■■□□□ 1.54
TSPAN3-208ENST00000560514 KDRP35968 1356 aa24.67■■□□□ 1.54
TSPAN3-208ENST00000560514 CNTNAP4Q9C0A0 1308 aa24.66■■□□□ 1.54
TSPAN3-208ENST00000560514 ARFGEF1Q9Y6D6 1849 aa24.66■■□□□ 1.54
TSPAN3-208ENST00000560514 ERVV-2B6SEH9 535 aa24.66■■□□□ 1.54
TSPAN3-208ENST00000560514 RPS6KA4O75676 772 aa24.66■■□□□ 1.54
TSPAN3-208ENST00000560514 KLRG1Q96E93 195 aa24.66■■□□□ 1.54
TSPAN3-208ENST00000560514 ZNF831Q5JPB2 1677 aa24.66■■□□□ 1.54
TSPAN3-208ENST00000560514 DALRD3Q5D0E6 543 aaKnown RBP24.64■■□□□ 1.54
TSPAN3-208ENST00000560514 DCAF5Q96JK2 942 aa24.63■■□□□ 1.53
TSPAN3-208ENST00000560514 RNF181Q9P0P0 153 aa24.63■■□□□ 1.53
TSPAN3-208ENST00000560514 COL5A3P25940 1745 aaPredicted RBP24.63■■□□□ 1.53
TSPAN3-208ENST00000560514 CABP4P57796 275 aa24.62■■□□□ 1.53
TSPAN3-208ENST00000560514 HTRA3P83110 453 aa24.62■■□□□ 1.53
TSPAN3-208ENST00000560514 SLC4A9Q96Q91 983 aa24.62■■□□□ 1.53
TSPAN3-208ENST00000560514 POLKQ9UBT6 870 aa24.62■■□□□ 1.53
TSPAN3-208ENST00000560514 KCPQ6ZWJ8 1503 aa24.61■■□□□ 1.53
TSPAN3-208ENST00000560514 KCNA3P22001 575 aa24.6■■□□□ 1.53
TSPAN3-208ENST00000560514 EIF4A2Q14240 407 aaKnown RBP24.6■■□□□ 1.53
TSPAN3-208ENST00000560514 PLEKHO1Q53GL0 409 aaPredicted RBP24.6■■□□□ 1.53
TSPAN3-208ENST00000560514 JMYQ8N9B5 988 aa24.59■■□□□ 1.53
TSPAN3-208ENST00000560514 RRAGCQ9HB90 399 aa24.59■■□□□ 1.53
TSPAN3-208ENST00000560514 TNNT2P45379 298 aaPredicted RBP24.58■■□□□ 1.53
TSPAN3-208ENST00000560514 COL13A1Q5TAT6 717 aaPredicted RBP24.58■■□□□ 1.53
TSPAN3-208ENST00000560514 MYH14Q7Z406 1995 aaKnown RBP24.58■■□□□ 1.52
TSPAN3-208ENST00000560514 CAPN15O75808 1086 aa24.57■■□□□ 1.52
TSPAN3-208ENST00000560514 TNRC6CQ9HCJ0 1690 aaKnown RBP24.56■■□□□ 1.52
TSPAN3-208ENST00000560514 PTCD1O75127 700 aaKnown RBP24.56■■□□□ 1.52
TSPAN3-208ENST00000560514 ZNF530Q6P9A1 599 aaPredicted RBP24.56■■□□□ 1.52
TSPAN3-208ENST00000560514 SMC1BQ8NDV3 1235 aa24.56■■□□□ 1.52
TSPAN3-208ENST00000560514 CRKLP46109 303 aaKnown RBP24.55■■□□□ 1.52
TSPAN3-208ENST00000560514 AMOTQ4VCS5 1084 aa24.55■■□□□ 1.52
TSPAN3-208ENST00000560514 MTHFSP49914 203 aa24.54■■□□□ 1.52
TSPAN3-208ENST00000560514 FKBP8Q14318 412 aa24.54■■□□□ 1.52
TSPAN3-208ENST00000560514 C1orf141Q5JVX7 400 aa24.54■■□□□ 1.52
TSPAN3-208ENST00000560514 TNS4Q8IZW8 715 aa24.54■■□□□ 1.52
TSPAN3-208ENST00000560514 SRP68Q9UHB9 627 aaKnown RBP24.54■■□□□ 1.52
TSPAN3-208ENST00000560514 CHRNA5P30532 468 aa24.53■■□□□ 1.52
TSPAN3-208ENST00000560514 POLR3GLQ9BT43 218 aa24.53■■□□□ 1.52
TSPAN3-208ENST00000560514 USP42Q9H9J4 1324 aaKnown RBP24.53■■□□□ 1.52
TSPAN3-208ENST00000560514 SBF1O95248 1867 aa24.53■■□□□ 1.52
TSPAN3-208ENST00000560514 DDR1Q08345 913 aa24.51■■□□□ 1.51
TSPAN3-208ENST00000560514 KDM6AO15550 1401 aaPredicted RBP24.51■■□□□ 1.51
TSPAN3-208ENST00000560514 ZPR1O75312 459 aa24.5■■□□□ 1.51
TSPAN3-208ENST00000560514 NFATC2IPQ8NCF5 419 aa24.49■■□□□ 1.51
TSPAN3-208ENST00000560514 ZC3H4Q9UPT8 1303 aaKnown RBP24.49■■□□□ 1.51
TSPAN3-208ENST00000560514 POLRMTO00411 1230 aaKnown RBP24.47■■□□□ 1.51
TSPAN3-208ENST00000560514 VEGFAP15692 232 aaPredicted RBP24.45■■□□□ 1.5
TSPAN3-208ENST00000560514 PRELPP51888 382 aa24.45■■□□□ 1.5
TSPAN3-208ENST00000560514 TJP1Q07157 1748 aa24.44■■□□□ 1.5
TSPAN3-208ENST00000560514 LMNB1P20700 586 aa24.44■■□□□ 1.5
TSPAN3-208ENST00000560514 TM4SF1P30408 202 aa24.44■■□□□ 1.5
TSPAN3-208ENST00000560514 RASSF7Q02833 373 aa24.44■■□□□ 1.5
TSPAN3-208ENST00000560514 USPL1Q5W0Q7 1092 aa24.44■■□□□ 1.5
TSPAN3-208ENST00000560514 PCNTO95613 3336 aa24.44■■□□□ 1.5
TSPAN3-208ENST00000560514 GLTPD2A6NH11 291 aa24.42■■□□□ 1.5
TSPAN3-208ENST00000560514 INTS5Q6P9B9 1019 aaKnown RBP24.42■■□□□ 1.5
TSPAN3-208ENST00000560514 HSPA1AP0DMV8 641 aaKnown RBP24.41■■□□□ 1.5
TSPAN3-208ENST00000560514 HSPA1BP0DMV9 641 aaKnown RBP24.41■■□□□ 1.5
TSPAN3-208ENST00000560514 AEBP1Q8IUX7 1158 aa24.4■■□□□ 1.5
TSPAN3-208ENST00000560514 CCDC88AQ3V6T2 1871 aa24.39■■□□□ 1.5
TSPAN3-208ENST00000560514 SULT6B1Q6IMI4 303 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms