RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 SSFA2P28290 1259 aa18.07■□□□□ 0.48
TPM1-220ENST00000559556 LINC00116Q8NCU8 138 aa18.07■□□□□ 0.48
TPM1-220ENST00000559556 SBF1O95248 1867 aa18.06■□□□□ 0.48
TPM1-220ENST00000559556 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.06■□□□□ 0.48
TPM1-220ENST00000559556 ADAMTS7Q9UKP4 1686 aa18.06■□□□□ 0.48
TPM1-220ENST00000559556 AFDNP55196 1824 aaKnown RBP18.05■□□□□ 0.48
TPM1-220ENST00000559556 ASAP1Q9ULH1 1129 aa18.05■□□□□ 0.48
TPM1-220ENST00000559556 PHF14O94880 888 aa18.04■□□□□ 0.48
TPM1-220ENST00000559556 TNNT2P45379 298 aaPredicted RBP18.04■□□□□ 0.48
TPM1-220ENST00000559556 POLR3GLQ9BT43 218 aa18.04■□□□□ 0.48
TPM1-220ENST00000559556 KDM6AO15550 1401 aaPredicted RBP18.04■□□□□ 0.48
TPM1-220ENST00000559556 UBR2Q8IWV8 1755 aa18.04■□□□□ 0.48
TPM1-220ENST00000559556 ADCY9O60503 1353 aa18.04■□□□□ 0.48
TPM1-220ENST00000559556 CCDC88AQ3V6T2 1871 aa18.03■□□□□ 0.48
TPM1-220ENST00000559556 GIGYF1O75420 1035 aaPredicted RBP18.03■□□□□ 0.48
TPM1-220ENST00000559556 EIF4G2P78344 907 aaKnown RBP eCLIP18.03■□□□□ 0.48
TPM1-220ENST00000559556 ITPK1Q13572 414 aa18.03■□□□□ 0.48
TPM1-220ENST00000559556 HSPA5P11021 654 aaKnown RBP18.02■□□□□ 0.48
TPM1-220ENST00000559556 SMIM5Q71RC9 77 aa18.02■□□□□ 0.48
TPM1-220ENST00000559556 PCGF6Q9BYE7 350 aa18.02■□□□□ 0.48
TPM1-220ENST00000559556 ATG3Q9NT62 314 aa18.02■□□□□ 0.48
TPM1-220ENST00000559556 ATP10DQ9P241 1426 aa18.01■□□□□ 0.47
TPM1-220ENST00000559556 SENP3-EIF4A1A0A087X0R7 540 aa18.01■□□□□ 0.47
TPM1-220ENST00000559556 ATP6V1AP38606 617 aa18.01■□□□□ 0.47
TPM1-220ENST00000559556 DLEC1Q9Y238 1755 aa18.01■□□□□ 0.47
TPM1-220ENST00000559556 SIPA1L3O60292 1781 aaPredicted RBP18■□□□□ 0.47
TPM1-220ENST00000559556 ERVV-2B6SEH9 535 aa18■□□□□ 0.47
TPM1-220ENST00000559556 GNPATO15228 680 aa18■□□□□ 0.47
TPM1-220ENST00000559556 PANK3Q9H999 370 aa18■□□□□ 0.47
TPM1-220ENST00000559556 DCAF5Q96JK2 942 aa17.99■□□□□ 0.47
TPM1-220ENST00000559556 HSP90AB1P08238 724 aaKnown RBP17.98■□□□□ 0.47
TPM1-220ENST00000559556 PXDNLA1KZ92 1463 aa17.98■□□□□ 0.47
TPM1-220ENST00000559556 SLC4A9Q96Q91 983 aa17.97■□□□□ 0.47
TPM1-220ENST00000559556 C10orf71Q711Q0 1435 aa17.97■□□□□ 0.47
TPM1-220ENST00000559556 MRC1P22897 1456 aa17.96■□□□□ 0.47
TPM1-220ENST00000559556 PLEKHO1Q53GL0 409 aaPredicted RBP17.96■□□□□ 0.47
TPM1-220ENST00000559556 ZNF530Q6P9A1 599 aaPredicted RBP17.96■□□□□ 0.47
TPM1-220ENST00000559556 CNTNAP4Q9C0A0 1308 aa17.96■□□□□ 0.46
TPM1-220ENST00000559556 NRXN2Q9P2S2 1712 aa17.95■□□□□ 0.46
TPM1-220ENST00000559556 AMOTQ4VCS5 1084 aa17.95■□□□□ 0.46
TPM1-220ENST00000559556 RC3H1Q5TC82 1133 aaKnown RBP17.95■□□□□ 0.46
TPM1-220ENST00000559556 ADRA2BP18089 450 aa17.94■□□□□ 0.46
TPM1-220ENST00000559556 RTCBQ9Y3I0 505 aaKnown RBP17.94■□□□□ 0.46
TPM1-220ENST00000559556 MMP10P09238 476 aa17.93■□□□□ 0.46
TPM1-220ENST00000559556 MORC1Q86VD1 984 aa17.93■□□□□ 0.46
TPM1-220ENST00000559556 AEBP1Q8IUX7 1158 aa17.93■□□□□ 0.46
TPM1-220ENST00000559556 RBM42Q9BTD8 480 aaKnown RBP17.93■□□□□ 0.46
TPM1-220ENST00000559556 CACNA1SQ13698 1873 aa17.92■□□□□ 0.46
TPM1-220ENST00000559556 TRAPPC3LQ5T215 181 aa17.92■□□□□ 0.46
TPM1-220ENST00000559556 CABP4P57796 275 aa17.91■□□□□ 0.46
TPM1-220ENST00000559556 C1orf141Q5JVX7 400 aa17.91■□□□□ 0.46
TPM1-220ENST00000559556 DICER1Q9UPY3 1922 aaKnown RBP17.91■□□□□ 0.46
TPM1-220ENST00000559556 RPS6KA4O75676 772 aa17.9■□□□□ 0.46
TPM1-220ENST00000559556 NLGN1Q8N2Q7 840 aa17.9■□□□□ 0.46
TPM1-220ENST00000559556 GPBP1L1Q9HC44 474 aaPredicted RBP17.9■□□□□ 0.46
TPM1-220ENST00000559556 WWC3Q9ULE0 1092 aa17.9■□□□□ 0.46
TPM1-220ENST00000559556 KNSTRNQ9Y448 316 aa17.9■□□□□ 0.46
TPM1-220ENST00000559556 TNRC6CQ9HCJ0 1690 aaKnown RBP17.9■□□□□ 0.46
TPM1-220ENST00000559556 KCPQ6ZWJ8 1503 aa17.89■□□□□ 0.45
TPM1-220ENST00000559556 ANKRD31Q8N7Z5 1873 aa17.89■□□□□ 0.45
TPM1-220ENST00000559556 GYS1P13807 737 aa17.89■□□□□ 0.45
TPM1-220ENST00000559556 MTHFSP49914 203 aa17.89■□□□□ 0.45
TPM1-220ENST00000559556 SULT6B1Q6IMI4 303 aa17.89■□□□□ 0.45
TPM1-220ENST00000559556 ARHGEF1Q92888 912 aaKnown RBP17.89■□□□□ 0.45
TPM1-220ENST00000559556 SCN7AQ01118 1682 aa17.88■□□□□ 0.45
TPM1-220ENST00000559556 IL13P35225 146 aa17.88■□□□□ 0.45
TPM1-220ENST00000559556 TGFB2P61812 414 aa17.88■□□□□ 0.45
TPM1-220ENST00000559556 AMER1Q5JTC6 1135 aaPredicted RBP17.88■□□□□ 0.45
TPM1-220ENST00000559556 TIAM2Q8IVF5 1701 aa17.86■□□□□ 0.45
TPM1-220ENST00000559556 WDR90Q96KV7 1748 aa17.86■□□□□ 0.45
TPM1-220ENST00000559556 PTCD1O75127 700 aaKnown RBP17.86■□□□□ 0.45
TPM1-220ENST00000559556 RFC4P35249 363 aa17.86■□□□□ 0.45
TPM1-220ENST00000559556 CRKLP46109 303 aaKnown RBP17.86■□□□□ 0.45
TPM1-220ENST00000559556 NFATC2IPQ8NCF5 419 aa17.86■□□□□ 0.45
TPM1-220ENST00000559556 CCER1Q8TC90 406 aaPredicted RBP17.86■□□□□ 0.45
TPM1-220ENST00000559556 CCDC87Q9NVE4 849 aa17.86■□□□□ 0.45
TPM1-220ENST00000559556 BCORQ6W2J9 1755 aa17.86■□□□□ 0.45
TPM1-220ENST00000559556 PCNTO95613 3336 aa17.85■□□□□ 0.45
TPM1-220ENST00000559556 KIF7Q2M1P5 1343 aa17.85■□□□□ 0.45
TPM1-220ENST00000559556 ARFGEF2Q9Y6D5 1785 aa17.84■□□□□ 0.45
TPM1-220ENST00000559556 COL3A1P02461 1466 aaPredicted RBP17.84■□□□□ 0.45
TPM1-220ENST00000559556 USP42Q9H9J4 1324 aaKnown RBP17.84■□□□□ 0.45
TPM1-220ENST00000559556 AKAP4Q5JQC9 854 aa17.84■□□□□ 0.45
TPM1-220ENST00000559556 ZNF526Q8TF50 670 aaPredicted RBP17.84■□□□□ 0.45
TPM1-220ENST00000559556 PARP3Q9Y6F1 533 aa17.84■□□□□ 0.45
TPM1-220ENST00000559556 DLG5Q8TDM6 1919 aa17.84■□□□□ 0.45
TPM1-220ENST00000559556 A0A0G2JLW4 131 aa17.83■□□□□ 0.44
TPM1-220ENST00000559556 FER1L6Q2WGJ9 1857 aa17.83■□□□□ 0.44
TPM1-220ENST00000559556 COL11A2P13942 1736 aaPredicted RBP17.82■□□□□ 0.44
TPM1-220ENST00000559556 BCS1LQ9Y276 419 aa17.82■□□□□ 0.44
TPM1-220ENST00000559556 DPEP1P16444 411 aa17.81■□□□□ 0.44
TPM1-220ENST00000559556 SLC52A2Q9HAB3 445 aa17.81■□□□□ 0.44
TPM1-220ENST00000559556 HSPA6P17066 643 aa17.8■□□□□ 0.44
TPM1-220ENST00000559556 INTS5Q6P9B9 1019 aaKnown RBP17.8■□□□□ 0.44
TPM1-220ENST00000559556 SRP68Q9UHB9 627 aaKnown RBP17.8■□□□□ 0.44
TPM1-220ENST00000559556 KIF3CO14782 793 aa17.79■□□□□ 0.44
TPM1-220ENST00000559556 KCNA3P22001 575 aa17.79■□□□□ 0.44
TPM1-220ENST00000559556 DDR1Q08345 913 aa17.79■□□□□ 0.44
TPM1-220ENST00000559556 FKBP8Q14318 412 aa17.79■□□□□ 0.44
TPM1-220ENST00000559556 SOS1Q07889 1333 aaPredicted RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms