RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 MARCH10Q8NA82 808 aaPredicted RBP12.6□□□□□ -0.39
CUX1-216ENST00000558469 LGR6Q9HBX8 967 aa12.6□□□□□ -0.39
CUX1-216ENST00000558469 RNMTO43148 476 aaKnown RBP12.59□□□□□ -0.39
CUX1-216ENST00000558469 HSP90AB1P08238 724 aaKnown RBP12.59□□□□□ -0.39
CUX1-216ENST00000558469 IL17REQ8NFR9 667 aa12.59□□□□□ -0.39
CUX1-216ENST00000558469 THUMPD2Q9BTF0 503 aaKnown RBP12.59□□□□□ -0.39
CUX1-216ENST00000558469 ZBED9Q6R2W3 1325 aa12.59□□□□□ -0.39
CUX1-216ENST00000558469 RGS12O14924 1447 aa12.58□□□□□ -0.4
CUX1-216ENST00000558469 KDM6AO15550 1401 aaPredicted RBP12.58□□□□□ -0.4
CUX1-216ENST00000558469 NKX1-1Q15270 411 aaPredicted RBP12.58□□□□□ -0.4
CUX1-216ENST00000558469 DCAF5Q96JK2 942 aa12.58□□□□□ -0.4
CUX1-216ENST00000558469 FAM182BQ5T319 152 aa12.57□□□□□ -0.4
CUX1-216ENST00000558469 KRT27Q7Z3Y8 459 aa12.57□□□□□ -0.4
CUX1-216ENST00000558469 ZNF521Q96K83 1311 aa12.57□□□□□ -0.4
CUX1-216ENST00000558469 CEMIPQ8WUJ3 1361 aa12.56□□□□□ -0.4
CUX1-216ENST00000558469 TEFQ10587 303 aa12.56□□□□□ -0.4
CUX1-216ENST00000558469 WDR63Q8IWG1 891 aa12.56□□□□□ -0.4
CUX1-216ENST00000558469 LAS1LQ9Y4W2 734 aaKnown RBP12.56□□□□□ -0.4
CUX1-216ENST00000558469 ERVV-2B6SEH9 535 aa12.55□□□□□ -0.4
CUX1-216ENST00000558469 CALD1Q05682 793 aaKnown RBP12.55□□□□□ -0.4
CUX1-216ENST00000558469 GOLGA2Q08379 1002 aa12.55□□□□□ -0.4
CUX1-216ENST00000558469 ACSBG1Q96GR2 724 aa12.55□□□□□ -0.4
CUX1-216ENST00000558469 KDM3BQ7LBC6 1761 aa12.55□□□□□ -0.4
CUX1-216ENST00000558469 CABP4P57796 275 aa12.54□□□□□ -0.4
CUX1-216ENST00000558469 NFATC2IPQ8NCF5 419 aa12.54□□□□□ -0.4
CUX1-216ENST00000558469 SLC52A2Q9HAB3 445 aa12.54□□□□□ -0.4
CUX1-216ENST00000558469 NHSQ6T4R5 1651 aa12.54□□□□□ -0.4
CUX1-216ENST00000558469 MRC1P22897 1456 aa12.53□□□□□ -0.4
CUX1-216ENST00000558469 BTAF1O14981 1849 aa12.53□□□□□ -0.4
CUX1-216ENST00000558469 PRIM1P49642 420 aaKnown RBP12.53□□□□□ -0.4
CUX1-216ENST00000558469 TAF7Q15545 349 aaPredicted RBP12.53□□□□□ -0.4
CUX1-216ENST00000558469 SYTL4Q96C24 671 aaPredicted RBP12.53□□□□□ -0.4
CUX1-216ENST00000558469 CDCA7LQ96GN5 454 aa12.53□□□□□ -0.4
CUX1-216ENST00000558469 IL16Q14005 1332 aa12.53□□□□□ -0.4
CUX1-216ENST00000558469 GNAI1P63096 354 aa12.52□□□□□ -0.41
CUX1-216ENST00000558469 FAM196AQ6ZSG2 479 aa12.52□□□□□ -0.41
CUX1-216ENST00000558469 CFAP44Q96MT7 982 aa12.52□□□□□ -0.41
CUX1-216ENST00000558469 IFT57Q9NWB7 429 aa12.52□□□□□ -0.41
CUX1-216ENST00000558469 TMOD3Q9NYL9 352 aa12.52□□□□□ -0.41
CUX1-216ENST00000558469 MIS18AQ9NYP9 233 aa12.52□□□□□ -0.41
CUX1-216ENST00000558469 PAPPAQ13219 1627 aa12.51□□□□□ -0.41
CUX1-216ENST00000558469 BTBD11A6QL63 1104 aa12.51□□□□□ -0.41
CUX1-216ENST00000558469 KCNQ2O43526 872 aa12.51□□□□□ -0.41
CUX1-216ENST00000558469 ZNF853P0CG23 659 aa12.51□□□□□ -0.41
CUX1-216ENST00000558469 SLFN5Q08AF3 891 aa12.51□□□□□ -0.41
CUX1-216ENST00000558469 BCL9O00512 1426 aa12.51□□□□□ -0.41
CUX1-216ENST00000558469 UBR2Q8IWV8 1755 aa12.51□□□□□ -0.41
CUX1-216ENST00000558469 E9PSI1 815 aa12.5□□□□□ -0.41
CUX1-216ENST00000558469 CHL1O00533 1208 aa12.5□□□□□ -0.41
CUX1-216ENST00000558469 PIGBQ92521 554 aa12.5□□□□□ -0.41
CUX1-216ENST00000558469 TSR2Q969E8 191 aaKnown RBP12.5□□□□□ -0.41
CUX1-216ENST00000558469 MYH16Q9H6N6 1097 aa12.5□□□□□ -0.41
CUX1-216ENST00000558469 MBIPQ9NS73 344 aa12.5□□□□□ -0.41
CUX1-216ENST00000558469 TSPYL4Q9UJ04 414 aa12.5□□□□□ -0.41
CUX1-216ENST00000558469 EP400Q96L91 3159 aa12.49□□□□□ -0.41
CUX1-216ENST00000558469 SLC39A6Q13433 755 aa12.49□□□□□ -0.41
CUX1-216ENST00000558469 BABAM1Q9NWV8 329 aa12.49□□□□□ -0.41
CUX1-216ENST00000558469 FANCIQ9NVI1 1328 aa12.48□□□□□ -0.41
CUX1-216ENST00000558469 PTF1AQ7RTS3 328 aa12.48□□□□□ -0.41
CUX1-216ENST00000558469 TRMT2AQ8IZ69 625 aaKnown RBP12.48□□□□□ -0.41
CUX1-216ENST00000558469 KCNQ3O43525 872 aa12.47□□□□□ -0.41
CUX1-216ENST00000558469 TRIM37O94972 964 aa12.47□□□□□ -0.41
CUX1-216ENST00000558469 DUSP27Q5VZP5 1158 aa12.47□□□□□ -0.41
CUX1-216ENST00000558469 ZNF790Q6PG37 636 aa12.47□□□□□ -0.41
CUX1-216ENST00000558469 TTC5Q8N0Z6 440 aa12.47□□□□□ -0.41
CUX1-216ENST00000558469 ASAP1Q9ULH1 1129 aa12.47□□□□□ -0.41
CUX1-216ENST00000558469 LY75O60449 1722 aa12.46□□□□□ -0.41
CUX1-216ENST00000558469 TNS1Q9HBL0 1735 aaKnown RBP12.46□□□□□ -0.41
CUX1-216ENST00000558469 C5P01031 1676 aa12.46□□□□□ -0.41
CUX1-216ENST00000558469 BCL11BQ9C0K0 894 aaPredicted RBP12.46□□□□□ -0.41
CUX1-216ENST00000558469 ATG3Q9NT62 314 aa12.46□□□□□ -0.41
CUX1-216ENST00000558469 ZBTB12Q9Y330 459 aaPredicted RBP12.46□□□□□ -0.41
CUX1-216ENST00000558469 EXOSC9Q06265 439 aaKnown RBP12.45□□□□□ -0.42
CUX1-216ENST00000558469 KCPQ6ZWJ8 1503 aa12.45□□□□□ -0.42
CUX1-216ENST00000558469 LAMB4A4D0S4 1761 aa12.44□□□□□ -0.42
CUX1-216ENST00000558469 PTCD1O75127 700 aaKnown RBP12.44□□□□□ -0.42
CUX1-216ENST00000558469 EIF4A1P60842 406 aaKnown RBP12.44□□□□□ -0.42
CUX1-216ENST00000558469 KRT24Q2M2I5 525 aa12.44□□□□□ -0.42
CUX1-216ENST00000558469 C8orf58Q8NAV2 365 aa12.44□□□□□ -0.42
CUX1-216ENST00000558469 RBM42Q9BTD8 480 aaKnown RBP12.44□□□□□ -0.42
CUX1-216ENST00000558469 CACNA1FO60840 1977 aa12.43□□□□□ -0.42
CUX1-216ENST00000558469 ELL2O00472 640 aaPredicted RBP12.43□□□□□ -0.42
CUX1-216ENST00000558469 SMARCC1Q92922 1105 aaPredicted RBP12.43□□□□□ -0.42
CUX1-216ENST00000558469 ZNF496Q96IT1 587 aaPredicted RBP12.43□□□□□ -0.42
CUX1-216ENST00000558469 FMNL2Q96PY5 1086 aa12.43□□□□□ -0.42
CUX1-216ENST00000558469 TAF1LQ8IZX4 1826 aa12.43□□□□□ -0.42
CUX1-216ENST00000558469 PALLDQ8WX93 1383 aa12.43□□□□□ -0.42
CUX1-216ENST00000558469 TJP1Q07157 1748 aa12.42□□□□□ -0.42
CUX1-216ENST00000558469 ZNF831Q5JPB2 1677 aa12.42□□□□□ -0.42
CUX1-216ENST00000558469 TSPYL6Q8N831 410 aa12.42□□□□□ -0.42
CUX1-216ENST00000558469 TWISTNBQ3B726 338 aaPredicted RBP12.41□□□□□ -0.42
CUX1-216ENST00000558469 HEG1Q9ULI3 1381 aa12.41□□□□□ -0.42
CUX1-216ENST00000558469 RGPD3A6NKT7 1758 aaPredicted RBP12.41□□□□□ -0.42
CUX1-216ENST00000558469 RGPD4Q7Z3J3 1758 aa12.41□□□□□ -0.42
CUX1-216ENST00000558469 COL5A3P25940 1745 aaPredicted RBP12.4□□□□□ -0.42
CUX1-216ENST00000558469 PRAMEF22A3QJZ6 481 aa12.4□□□□□ -0.42
CUX1-216ENST00000558469 GIGYF1O75420 1035 aaPredicted RBP12.4□□□□□ -0.42
CUX1-216ENST00000558469 APBA3O96018 575 aa12.4□□□□□ -0.42
CUX1-216ENST00000558469 SNRPA1P09661 255 aaKnown RBP12.4□□□□□ -0.42
CUX1-216ENST00000558469 CICQ96RK0 1608 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms