RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 SIPA1L3O60292 1781 aaPredicted RBP13.96□□□□□ -0.18
SHMT2-224ENST00000556737 UBR2Q8IWV8 1755 aa13.96□□□□□ -0.18
SHMT2-224ENST00000556737 ITPK1Q13572 414 aa13.95□□□□□ -0.18
SHMT2-224ENST00000556737 C1orf141Q5JVX7 400 aa13.95□□□□□ -0.18
SHMT2-224ENST00000556737 LINC00116Q8NCU8 138 aa13.95□□□□□ -0.18
SHMT2-224ENST00000556737 SLC16A10Q8TF71 515 aa13.95□□□□□ -0.18
SHMT2-224ENST00000556737 MAP3K5Q99683 1374 aa13.95□□□□□ -0.18
SHMT2-224ENST00000556737 C4AP0C0L4 1744 aa13.94□□□□□ -0.18
SHMT2-224ENST00000556737 PPP2R1AP30153 589 aa13.94□□□□□ -0.18
SHMT2-224ENST00000556737 AKAP4Q5JQC9 854 aa13.94□□□□□ -0.18
SHMT2-224ENST00000556737 COL23A1Q86Y22 540 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-224ENST00000556737 SLC4A9Q96Q91 983 aa13.94□□□□□ -0.18
SHMT2-224ENST00000556737 KCPQ6ZWJ8 1503 aa13.94□□□□□ -0.18
SHMT2-224ENST00000556737 MTHFSDQ2M296 383 aaKnown RBP13.93□□□□□ -0.18
SHMT2-224ENST00000556737 FHDC1Q9C0D6 1143 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-224ENST00000556737 MYH14Q7Z406 1995 aaKnown RBP13.91□□□□□ -0.18
SHMT2-224ENST00000556737 U2SURPO15042 1029 aaKnown RBP13.91□□□□□ -0.18
SHMT2-224ENST00000556737 CABP4P57796 275 aa13.91□□□□□ -0.18
SHMT2-224ENST00000556737 SMIM5Q71RC9 77 aa13.91□□□□□ -0.18
SHMT2-224ENST00000556737 AK7Q96M32 723 aa13.91□□□□□ -0.18
SHMT2-224ENST00000556737 ARXQ96QS3 562 aa13.91□□□□□ -0.18
SHMT2-224ENST00000556737 RNMTO43148 476 aaKnown RBP13.9□□□□□ -0.18
SHMT2-224ENST00000556737 ATP6V1AP38606 617 aa13.9□□□□□ -0.18
SHMT2-224ENST00000556737 RSPH6AQ9H0K4 717 aa13.9□□□□□ -0.18
SHMT2-224ENST00000556737 LGR6Q9HBX8 967 aa13.9□□□□□ -0.18
SHMT2-224ENST00000556737 SSFA2P28290 1259 aa13.89□□□□□ -0.19
SHMT2-224ENST00000556737 NFATC2IPQ8NCF5 419 aa13.89□□□□□ -0.19
SHMT2-224ENST00000556737 CFAP53Q96M91 514 aa13.89□□□□□ -0.19
SHMT2-224ENST00000556737 SYT17Q9BSW7 474 aa13.89□□□□□ -0.19
SHMT2-224ENST00000556737 SLC52A2Q9HAB3 445 aa13.89□□□□□ -0.19
SHMT2-224ENST00000556737 CNTNAP4Q9C0A0 1308 aa13.89□□□□□ -0.19
SHMT2-224ENST00000556737 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.88□□□□□ -0.19
SHMT2-224ENST00000556737 PHF14O94880 888 aa13.88□□□□□ -0.19
SHMT2-224ENST00000556737 HMGB2P26583 209 aaKnown RBP13.88□□□□□ -0.19
SHMT2-224ENST00000556737 MSL1Q68DK7 614 aa13.88□□□□□ -0.19
SHMT2-224ENST00000556737 FLAD1Q8NFF5 587 aa13.88□□□□□ -0.19
SHMT2-224ENST00000556737 RBM42Q9BTD8 480 aaKnown RBP13.88□□□□□ -0.19
SHMT2-224ENST00000556737 UTRNP46939 3433 aa13.88□□□□□ -0.19
SHMT2-224ENST00000556737 GNPATO15228 680 aa13.87□□□□□ -0.19
SHMT2-224ENST00000556737 MSH5O43196 834 aa13.87□□□□□ -0.19
SHMT2-224ENST00000556737 PRKAR2BP31323 418 aa13.87□□□□□ -0.19
SHMT2-224ENST00000556737 CEMIPQ8WUJ3 1361 aa13.86□□□□□ -0.19
SHMT2-224ENST00000556737 PTCD1O75127 700 aaKnown RBP13.86□□□□□ -0.19
SHMT2-224ENST00000556737 POLD1P28340 1107 aa13.86□□□□□ -0.19
SHMT2-224ENST00000556737 GAS2L2Q8NHY3 880 aa13.86□□□□□ -0.19
SHMT2-224ENST00000556737 PHACTR3Q96KR7 559 aa13.86□□□□□ -0.19
SHMT2-224ENST00000556737 KIAA1551Q9HCM1 1747 aa13.85□□□□□ -0.19
SHMT2-224ENST00000556737 DLG5Q8TDM6 1919 aa13.85□□□□□ -0.19
SHMT2-224ENST00000556737 KIF13BQ9NQT8 1826 aa13.85□□□□□ -0.19
SHMT2-224ENST00000556737 SLC39A6Q13433 755 aa13.84□□□□□ -0.19
SHMT2-224ENST00000556737 RC3H1Q5TC82 1133 aaKnown RBP13.84□□□□□ -0.19
SHMT2-224ENST00000556737 IL17REQ8NFR9 667 aa13.84□□□□□ -0.19
SHMT2-224ENST00000556737 NUDCQ9Y266 331 aa13.84□□□□□ -0.19
SHMT2-224ENST00000556737 GOLGB1Q14789 3259 aaKnown RBP13.83□□□□□ -0.2
SHMT2-224ENST00000556737 GNAT3A8MTJ3 354 aa13.83□□□□□ -0.2
SHMT2-224ENST00000556737 U2AF1L5P0DN76 240 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-224ENST00000556737 U2AF1Q01081 240 aaKnown RBP eCLIP13.83□□□□□ -0.2
SHMT2-224ENST00000556737 NLGN2Q8NFZ4 835 aa13.83□□□□□ -0.2
SHMT2-224ENST00000556737 FCHSD2O94868 740 aa13.82□□□□□ -0.2
SHMT2-224ENST00000556737 CRKLP46109 303 aaKnown RBP13.82□□□□□ -0.2
SHMT2-224ENST00000556737 RPS6KA4O75676 772 aa13.81□□□□□ -0.2
SHMT2-224ENST00000556737 ADRA2BP18089 450 aa13.81□□□□□ -0.2
SHMT2-224ENST00000556737 DDX10Q13206 875 aaKnown RBP13.81□□□□□ -0.2
SHMT2-224ENST00000556737 DNAJC10Q8IXB1 793 aa13.81□□□□□ -0.2
SHMT2-224ENST00000556737 RTCBQ9Y3I0 505 aaKnown RBP13.81□□□□□ -0.2
SHMT2-224ENST00000556737 SCN7AQ01118 1682 aa13.8□□□□□ -0.2
SHMT2-224ENST00000556737 INTS5Q6P9B9 1019 aaKnown RBP13.8□□□□□ -0.2
SHMT2-224ENST00000556737 KLHL34Q8N239 644 aa13.8□□□□□ -0.2
SHMT2-224ENST00000556737 ARHGEF1Q92888 912 aaKnown RBP13.8□□□□□ -0.2
SHMT2-224ENST00000556737 KDM3BQ7LBC6 1761 aa13.8□□□□□ -0.2
SHMT2-224ENST00000556737 CYP19A1P11511 503 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-224ENST00000556737 RALBP1Q15311 655 aa13.79□□□□□ -0.2
SHMT2-224ENST00000556737 C10orf71Q711Q0 1435 aa13.79□□□□□ -0.2
SHMT2-224ENST00000556737 LAMB4A4D0S4 1761 aa13.78□□□□□ -0.2
SHMT2-224ENST00000556737 GYS1P13807 737 aa13.78□□□□□ -0.2
SHMT2-224ENST00000556737 TEFQ10587 303 aa13.78□□□□□ -0.2
SHMT2-224ENST00000556737 TRAPPC3LQ5T215 181 aa13.78□□□□□ -0.2
SHMT2-224ENST00000556737 VSIG10Q8N0Z9 540 aa13.78□□□□□ -0.2
SHMT2-224ENST00000556737 PLEKHF1Q96S99 279 aa13.78□□□□□ -0.2
SHMT2-224ENST00000556737 CCDC87Q9NVE4 849 aa13.78□□□□□ -0.2
SHMT2-224ENST00000556737 SOS1Q07889 1333 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-224ENST00000556737 USP42Q9H9J4 1324 aaKnown RBP13.78□□□□□ -0.2
SHMT2-224ENST00000556737 CHD4Q14839 1912 aa13.78□□□□□ -0.2
SHMT2-224ENST00000556737 COL15A1P39059 1388 aa13.77□□□□□ -0.21
SHMT2-224ENST00000556737 ZNF790Q6PG37 636 aa13.77□□□□□ -0.21
SHMT2-224ENST00000556737 ZNF496Q96IT1 587 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-224ENST00000556737 MYBBP1AQ9BQG0 1328 aaKnown RBP13.77□□□□□ -0.21
SHMT2-224ENST00000556737 HEG1Q9ULI3 1381 aa13.77□□□□□ -0.21
SHMT2-224ENST00000556737 ZBTB1Q9Y2K1 713 aa13.77□□□□□ -0.21
SHMT2-224ENST00000556737 CD2APQ9Y5K6 639 aa13.77□□□□□ -0.21
SHMT2-224ENST00000556737 BRCA1P38398 1863 aaKnown RBP13.76□□□□□ -0.21
SHMT2-224ENST00000556737 BCORQ6W2J9 1755 aa13.76□□□□□ -0.21
SHMT2-224ENST00000556737 NRXN2Q9P2S2 1712 aa13.76□□□□□ -0.21
SHMT2-224ENST00000556737 PXDNLA1KZ92 1463 aa13.76□□□□□ -0.21
SHMT2-224ENST00000556737 MMP10P09238 476 aa13.76□□□□□ -0.21
SHMT2-224ENST00000556737 MCM10Q7L590 875 aa13.76□□□□□ -0.21
SHMT2-224ENST00000556737 SRP68Q9UHB9 627 aaKnown RBP13.76□□□□□ -0.21
SHMT2-224ENST00000556737 N4BP2Q86UW6 1770 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-224ENST00000556737 DCAF8L1A6NGE4 600 aa13.75□□□□□ -0.21
SHMT2-224ENST00000556737 KCNQ3O43525 872 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms