RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ESYT1Q9BSJ8 1104 aa9.13□□□□□ -0.95
SCFD1-221ENST00000556534 TTLL8A6PVC2 850 aa9.12□□□□□ -0.95
SCFD1-221ENST00000556534 SNRPBP14678 240 aaKnown RBP9.12□□□□□ -0.95
SCFD1-221ENST00000556534 CDCA8Q53HL2 280 aa9.12□□□□□ -0.95
SCFD1-221ENST00000556534 CCDC102BQ68D86 513 aa9.12□□□□□ -0.95
SCFD1-221ENST00000556534 ARID3AQ99856 593 aa9.12□□□□□ -0.95
SCFD1-221ENST00000556534 FHDC1Q9C0D6 1143 aaPredicted RBP9.12□□□□□ -0.95
SCFD1-221ENST00000556534 ZNF358Q9NW07 568 aa9.12□□□□□ -0.95
SCFD1-221ENST00000556534 DNMT3LQ9UJW3 386 aa9.12□□□□□ -0.95
SCFD1-221ENST00000556534 GPC1P35052 558 aa9.11□□□□□ -0.95
SCFD1-221ENST00000556534 RNF144AP50876 292 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-221ENST00000556534 LARP1Q6PKG0 1096 aaKnown RBP9.11□□□□□ -0.95
SCFD1-221ENST00000556534 SOBPA7XYQ1 873 aa9.1□□□□□ -0.95
SCFD1-221ENST00000556534 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.1□□□□□ -0.95
SCFD1-221ENST00000556534 NLRP3Q96P20 1036 aa9.1□□□□□ -0.95
SCFD1-221ENST00000556534 ARXQ96QS3 562 aa9.1□□□□□ -0.95
SCFD1-221ENST00000556534 C11orf95C9JLR9 678 aaPredicted RBP9.09□□□□□ -0.95
SCFD1-221ENST00000556534 ATG7O95352 703 aa9.09□□□□□ -0.95
SCFD1-221ENST00000556534 ANKMY2Q8IV38 441 aa9.09□□□□□ -0.95
SCFD1-221ENST00000556534 SLC4A9Q96Q91 983 aa9.09□□□□□ -0.95
SCFD1-221ENST00000556534 GRIP2Q9C0E4 1043 aa9.09□□□□□ -0.95
SCFD1-221ENST00000556534 ZMIZ1Q9ULJ6 1067 aa9.09□□□□□ -0.95
SCFD1-221ENST00000556534 EPHA4P54764 986 aa9.08□□□□□ -0.96
SCFD1-221ENST00000556534 CENPCQ03188 943 aa9.08□□□□□ -0.96
SCFD1-221ENST00000556534 DPYDQ12882 1025 aa9.08□□□□□ -0.96
SCFD1-221ENST00000556534 TLR1Q15399 786 aa9.08□□□□□ -0.96
SCFD1-221ENST00000556534 SERTAD1Q9UHV2 236 aa9.08□□□□□ -0.96
SCFD1-221ENST00000556534 FIGNL2A6NMB9 653 aa9.07□□□□□ -0.96
SCFD1-221ENST00000556534 SFI1A8K8P3 1242 aa9.07□□□□□ -0.96
SCFD1-221ENST00000556534 M0R2N6 131 aa9.07□□□□□ -0.96
SCFD1-221ENST00000556534 MAN1A2O60476 641 aa9.07□□□□□ -0.96
SCFD1-221ENST00000556534 ELOAQ14241 798 aaKnown RBP9.07□□□□□ -0.96
SCFD1-221ENST00000556534 MTFR1Q15390 333 aa9.07□□□□□ -0.96
SCFD1-221ENST00000556534 NOVA2Q9UNW9 492 aaKnown RBP9.07□□□□□ -0.96
SCFD1-221ENST00000556534 PPP1R15AO75807 674 aaPredicted RBP9.06□□□□□ -0.96
SCFD1-221ENST00000556534 SMTNP53814 917 aa9.06□□□□□ -0.96
SCFD1-221ENST00000556534 SEC13P55735 322 aa9.06□□□□□ -0.96
SCFD1-221ENST00000556534 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.06□□□□□ -0.962e-7■□□□□ 8.5
SCFD1-221ENST00000556534 USP3Q9Y6I4 520 aa9.06□□□□□ -0.96
SCFD1-221ENST00000556534 BACH1O14867 736 aa9.05□□□□□ -0.96
SCFD1-221ENST00000556534 SLC27A3Q5K4L6 730 aa9.05□□□□□ -0.96
SCFD1-221ENST00000556534 ZNF787Q6DD87 383 aa9.05□□□□□ -0.96
SCFD1-221ENST00000556534 LYSMD3Q7Z3D4 306 aa9.05□□□□□ -0.96
SCFD1-221ENST00000556534 ZNF295-AS1Q8N0V1 137 aa9.05□□□□□ -0.96
SCFD1-221ENST00000556534 TSEN2Q8NCE0 465 aaKnown RBP9.05□□□□□ -0.96
SCFD1-221ENST00000556534 STK32AQ8WU08 396 aa9.05□□□□□ -0.96
SCFD1-221ENST00000556534 ZSCAN10Q96SZ4 725 aaPredicted RBP9.05□□□□□ -0.96
SCFD1-221ENST00000556534 IQSEC3Q9UPP2 1182 aaPredicted RBP9.05□□□□□ -0.96
SCFD1-221ENST00000556534 A6NJY4 79 aa9.04□□□□□ -0.96
SCFD1-221ENST00000556534 SPATA31C2B4DYI2 1134 aa9.04□□□□□ -0.96
SCFD1-221ENST00000556534 FOXK2Q01167 660 aa9.04□□□□□ -0.96
SCFD1-221ENST00000556534 PRICKLE2Q7Z3G6 844 aa9.03□□□□□ -0.96
SCFD1-221ENST00000556534 PPARGC1BQ86YN6 1023 aaKnown RBP9.03□□□□□ -0.96
SCFD1-221ENST00000556534 TNS4Q8IZW8 715 aa9.03□□□□□ -0.96
SCFD1-221ENST00000556534 SCHIP1Q9P0W5 487 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-221ENST00000556534 RBM19Q9Y4C8 960 aaKnown RBP9.03□□□□□ -0.96
SCFD1-221ENST00000556534 RHOQP17081 205 aa9.02□□□□□ -0.97
SCFD1-221ENST00000556534 NBPF10Q6P3W6 841 aaKnown RBP9.02□□□□□ -0.97
SCFD1-221ENST00000556534 NBPF15Q8N660 670 aa9.02□□□□□ -0.97
SCFD1-221ENST00000556534 FAM200AQ8TCP9 573 aa9.02□□□□□ -0.97
SCFD1-221ENST00000556534 SENP3-EIF4A1A0A087X0R7 540 aa9.01□□□□□ -0.97
SCFD1-221ENST00000556534 CDK2AP1O14519 115 aa9.01□□□□□ -0.97
SCFD1-221ENST00000556534 C4orf17Q53FE4 359 aa9.01□□□□□ -0.97
SCFD1-221ENST00000556534 TMEM164Q5U3C3 297 aa9.01□□□□□ -0.97
SCFD1-221ENST00000556534 TMEM214Q6NUQ4 689 aaKnown RBP9.01□□□□□ -0.97
SCFD1-221ENST00000556534 RHBDD1Q8TEB9 315 aa9.01□□□□□ -0.97
SCFD1-221ENST00000556534 PTSQ03393 145 aa9□□□□□ -0.97
SCFD1-221ENST00000556534 FAM69CQ0P6D2 419 aa9□□□□□ -0.97
SCFD1-221ENST00000556534 POU4F2Q12837 409 aa9□□□□□ -0.97
SCFD1-221ENST00000556534 GNASQ5JWF2 1037 aa9□□□□□ -0.97
SCFD1-221ENST00000556534 TAS1R3Q7RTX0 852 aa9□□□□□ -0.97
SCFD1-221ENST00000556534 SLC9A9Q8IVB4 645 aa9□□□□□ -0.97
SCFD1-221ENST00000556534 TSPAN10Q9H1Z9 355 aaPredicted RBP9□□□□□ -0.97
SCFD1-221ENST00000556534 ACIN1Q9UKV3 1341 aaKnown RBP9□□□□□ -0.97
SCFD1-221ENST00000556534 WDR44Q5JSH3 913 aa8.99□□□□□ -0.97
SCFD1-221ENST00000556534 SLC35F4A4IF30 521 aa8.98□□□□□ -0.97
SCFD1-221ENST00000556534 C21orf2O43822 256 aa8.98□□□□□ -0.97
SCFD1-221ENST00000556534 GTF2E1P29083 439 aaPredicted RBP8.98□□□□□ -0.97
SCFD1-221ENST00000556534 TBCELQ5QJ74 424 aa8.98□□□□□ -0.97
SCFD1-221ENST00000556534 LGR5O75473 907 aa8.97□□□□□ -0.97
SCFD1-221ENST00000556534 PLA2G4AP47712 749 aa8.97□□□□□ -0.97
SCFD1-221ENST00000556534 SWI5Q1ZZU3 235 aa8.97□□□□□ -0.97
SCFD1-221ENST00000556534 ZDHHC1Q8WTX9 485 aa8.97□□□□□ -0.97
SCFD1-221ENST00000556534 NIFKQ9BYG3 293 aaKnown RBP8.97□□□□□ -0.97
SCFD1-221ENST00000556534 TMEM88BA6NKF7 163 aa8.96□□□□□ -0.98
SCFD1-221ENST00000556534 PHKA2P46019 1235 aa8.96□□□□□ -0.98
SCFD1-221ENST00000556534 POTEAQ6S8J7 498 aa8.96□□□□□ -0.98
SCFD1-221ENST00000556534 CCDC155Q8N6L0 562 aa8.96□□□□□ -0.98
SCFD1-221ENST00000556534 HINFPQ9BQA5 517 aa8.96□□□□□ -0.98
SCFD1-221ENST00000556534 PSMA6P60900 246 aaKnown RBP8.95□□□□□ -0.98
SCFD1-221ENST00000556534 TEAD4Q15561 434 aa8.95□□□□□ -0.98
SCFD1-221ENST00000556534 TIMMDC1Q9NPL8 285 aa8.95□□□□□ -0.98
SCFD1-221ENST00000556534 SLAIN2Q9P270 581 aa8.95□□□□□ -0.98
SCFD1-221ENST00000556534 DYRK1BQ9Y463 629 aa8.95□□□□□ -0.98
SCFD1-221ENST00000556534 EML1O00423 815 aa8.94□□□□□ -0.98
SCFD1-221ENST00000556534 IGFBP4P22692 258 aa8.94□□□□□ -0.98
SCFD1-221ENST00000556534 WEE1P30291 646 aa8.94□□□□□ -0.98
SCFD1-221ENST00000556534 SH3PXD2AQ5TCZ1 1133 aa8.94□□□□□ -0.98
SCFD1-221ENST00000556534 SCG3Q8WXD2 468 aaKnown RBP8.94□□□□□ -0.98
SCFD1-221ENST00000556534 CLP1Q92989 425 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms