RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 ITPK1Q13572 414 aa30.78■■■□□ 2.52
ACTN1-220ENST00000556433 SULT6B1Q6IMI4 303 aa30.78■■■□□ 2.52
ACTN1-220ENST00000556433 C4BP0C0L5 1744 aa30.78■■■□□ 2.52
ACTN1-220ENST00000556433 IL13P35225 146 aa30.77■■■□□ 2.52
ACTN1-220ENST00000556433 SSFA2P28290 1259 aa30.74■■■□□ 2.51
ACTN1-220ENST00000556433 C1orf141Q5JVX7 400 aa30.74■■■□□ 2.51
ACTN1-220ENST00000556433 PER1O15534 1290 aaPredicted RBP30.73■■■□□ 2.51
ACTN1-220ENST00000556433 MTHFSP49914 203 aa30.73■■■□□ 2.51
ACTN1-220ENST00000556433 CABP4P57796 275 aa30.73■■■□□ 2.51
ACTN1-220ENST00000556433 RBM42Q9BTD8 480 aaKnown RBP30.73■■■□□ 2.51
ACTN1-220ENST00000556433 GNPATO15228 680 aa30.72■■■□□ 2.51
ACTN1-220ENST00000556433 ZNF784Q8NCA9 323 aaPredicted RBP30.72■■■□□ 2.51
ACTN1-220ENST00000556433 CC2D1BQ5T0F9 858 aaKnown RBP30.7■■■□□ 2.51
ACTN1-220ENST00000556433 CD2APQ9Y5K6 639 aa30.7■■■□□ 2.51
ACTN1-220ENST00000556433 KDM6AO15550 1401 aaPredicted RBP30.69■■■□□ 2.5
ACTN1-220ENST00000556433 UTRNP46939 3433 aa30.68■■■□□ 2.5
ACTN1-220ENST00000556433 SLC4A9Q96Q91 983 aa30.68■■■□□ 2.5
ACTN1-220ENST00000556433 KDRP35968 1356 aa30.67■■■□□ 2.5
ACTN1-220ENST00000556433 UBR3Q6ZT12 1888 aa30.67■■■□□ 2.5
ACTN1-220ENST00000556433 CHD4Q14839 1912 aa30.65■■■□□ 2.5
ACTN1-220ENST00000556433 NFATC2IPQ8NCF5 419 aa30.65■■■□□ 2.5
ACTN1-220ENST00000556433 GRIN3BO60391 1043 aa30.64■■■□□ 2.5
ACTN1-220ENST00000556433 YBX3P16989 372 aaKnown RBP eCLIP30.64■■■□□ 2.53e-6■■■■□ 24.3
ACTN1-220ENST00000556433 RTCBQ9Y3I0 505 aaKnown RBP30.64■■■□□ 2.5
ACTN1-220ENST00000556433 TRAPPC3LQ5T215 181 aa30.63■■■□□ 2.49
ACTN1-220ENST00000556433 HMOX1P09601 288 aa30.62■■■□□ 2.49
ACTN1-220ENST00000556433 CNGB1Q14028 1251 aaPredicted RBP30.62■■■□□ 2.49
ACTN1-220ENST00000556433 RC3H1Q5TC82 1133 aaKnown RBP30.62■■■□□ 2.49
ACTN1-220ENST00000556433 PTCD1O75127 700 aaKnown RBP30.61■■■□□ 2.49
ACTN1-220ENST00000556433 AKAP4Q5JQC9 854 aa30.61■■■□□ 2.49
ACTN1-220ENST00000556433 DIAPH1O60610 1272 aaKnown RBP30.6■■■□□ 2.49
ACTN1-220ENST00000556433 CNTNAP4Q9C0A0 1308 aa30.57■■■□□ 2.48
ACTN1-220ENST00000556433 ARHGEF1Q92888 912 aaKnown RBP30.57■■■□□ 2.48
ACTN1-220ENST00000556433 RPS6KA4O75676 772 aa30.56■■■□□ 2.48
ACTN1-220ENST00000556433 LGR6Q9HBX8 967 aa30.56■■■□□ 2.48
ACTN1-220ENST00000556433 MMP10P09238 476 aa30.55■■■□□ 2.48
ACTN1-220ENST00000556433 ADRA2BP18089 450 aa30.55■■■□□ 2.48
ACTN1-220ENST00000556433 NLGN1Q8N2Q7 840 aa30.54■■■□□ 2.48
ACTN1-220ENST00000556433 NPC1L1Q9UHC9 1359 aa30.54■■■□□ 2.48
ACTN1-220ENST00000556433 RFC4P35249 363 aa30.53■■■□□ 2.48
ACTN1-220ENST00000556433 ZNF831Q5JPB2 1677 aa30.52■■■□□ 2.48
ACTN1-220ENST00000556433 MTHFSDQ2M296 383 aaKnown RBP30.52■■■□□ 2.48
ACTN1-220ENST00000556433 SLC52A2Q9HAB3 445 aa30.52■■■□□ 2.48
ACTN1-220ENST00000556433 RNMTO43148 476 aaKnown RBP30.51■■■□□ 2.47
ACTN1-220ENST00000556433 CRKLP46109 303 aaKnown RBP30.5■■■□□ 2.47
ACTN1-220ENST00000556433 WWC3Q9ULE0 1092 aa30.5■■■□□ 2.47
ACTN1-220ENST00000556433 U2SURPO15042 1029 aaKnown RBP30.48■■■□□ 2.47
ACTN1-220ENST00000556433 GYS1P13807 737 aa30.48■■■□□ 2.47
ACTN1-220ENST00000556433 SLC39A6Q13433 755 aa30.46■■■□□ 2.47
ACTN1-220ENST00000556433 COL5A3P25940 1745 aaPredicted RBP30.46■■■□□ 2.47
ACTN1-220ENST00000556433 SCN11AQ9UI33 1791 aa30.46■■■□□ 2.47
ACTN1-220ENST00000556433 GOLGB1Q14789 3259 aaKnown RBP30.46■■■□□ 2.47
ACTN1-220ENST00000556433 DNAJC10Q8IXB1 793 aa30.44■■■□□ 2.46
ACTN1-220ENST00000556433 MYH14Q7Z406 1995 aaKnown RBP30.44■■■□□ 2.46
ACTN1-220ENST00000556433 INTS5Q6P9B9 1019 aaKnown RBP30.43■■■□□ 2.46
ACTN1-220ENST00000556433 PARP3Q9Y6F1 533 aa30.42■■■□□ 2.46
ACTN1-220ENST00000556433 CCDC87Q9NVE4 849 aa30.41■■■□□ 2.46
ACTN1-220ENST00000556433 SRP68Q9UHB9 627 aaKnown RBP30.41■■■□□ 2.46
ACTN1-220ENST00000556433 COL3A1P02461 1466 aaPredicted RBP30.4■■■□□ 2.46
ACTN1-220ENST00000556433 TGFB2P61812 414 aa30.4■■■□□ 2.46
ACTN1-220ENST00000556433 C1QTNF8P60827 252 aa30.39■■■□□ 2.46
ACTN1-220ENST00000556433 CFAP53Q96M91 514 aa30.38■■■□□ 2.45
ACTN1-220ENST00000556433 MRC1P22897 1456 aa30.38■■■□□ 2.45
ACTN1-220ENST00000556433 CICQ96RK0 1608 aaPredicted RBP30.37■■■□□ 2.45
ACTN1-220ENST00000556433 A0A0G2JLW4 131 aa30.37■■■□□ 2.45
ACTN1-220ENST00000556433 GIGYF1O75420 1035 aaPredicted RBP30.37■■■□□ 2.45
ACTN1-220ENST00000556433 CYP19A1P11511 503 aaPredicted RBP30.37■■■□□ 2.45
ACTN1-220ENST00000556433 FKBP8Q14318 412 aa30.37■■■□□ 2.45
ACTN1-220ENST00000556433 GAS2L2Q8NHY3 880 aa30.37■■■□□ 2.45
ACTN1-220ENST00000556433 USP42Q9H9J4 1324 aaKnown RBP30.37■■■□□ 2.45
ACTN1-220ENST00000556433 TJP1Q07157 1748 aa30.36■■■□□ 2.45
ACTN1-220ENST00000556433 PXDNLA1KZ92 1463 aa30.34■■■□□ 2.45
ACTN1-220ENST00000556433 GNAT3A8MTJ3 354 aa30.34■■■□□ 2.45
ACTN1-220ENST00000556433 IL17REQ8NFR9 667 aa30.34■■■□□ 2.45
ACTN1-220ENST00000556433 C10orf71Q711Q0 1435 aa30.33■■■□□ 2.45
ACTN1-220ENST00000556433 ZPR1O75312 459 aa30.33■■■□□ 2.45
ACTN1-220ENST00000556433 VSIG10Q8N0Z9 540 aa30.33■■■□□ 2.45
ACTN1-220ENST00000556433 SOS1Q07889 1333 aaPredicted RBP30.32■■■□□ 2.44
ACTN1-220ENST00000556433 DPEP1P16444 411 aa30.32■■■□□ 2.44
ACTN1-220ENST00000556433 TEFQ10587 303 aa30.32■■■□□ 2.44
ACTN1-220ENST00000556433 TTC5Q8N0Z6 440 aa30.32■■■□□ 2.44
ACTN1-220ENST00000556433 BCS1LQ9Y276 419 aa30.32■■■□□ 2.44
ACTN1-220ENST00000556433 ATP10DQ9P241 1426 aa30.31■■■□□ 2.44
ACTN1-220ENST00000556433 C4AP0C0L4 1744 aa30.31■■■□□ 2.44
ACTN1-220ENST00000556433 USPL1Q5W0Q7 1092 aa30.31■■■□□ 2.44
ACTN1-220ENST00000556433 NUDCQ9Y266 331 aa30.31■■■□□ 2.44
ACTN1-220ENST00000556433 PPP2R1AP30153 589 aa30.3■■■□□ 2.44
ACTN1-220ENST00000556433 DDR1Q08345 913 aa30.3■■■□□ 2.44
ACTN1-220ENST00000556433 PHACTR3Q96KR7 559 aa30.3■■■□□ 2.44
ACTN1-220ENST00000556433 KCPQ6ZWJ8 1503 aa30.3■■■□□ 2.44
ACTN1-220ENST00000556433 ADAMTS7Q9UKP4 1686 aa30.3■■■□□ 2.44
ACTN1-220ENST00000556433 PRKAR2BP31323 418 aa30.29■■■□□ 2.44
ACTN1-220ENST00000556433 ZBTB1Q9Y2K1 713 aa30.29■■■□□ 2.44
ACTN1-220ENST00000556433 KIF13BQ9NQT8 1826 aa30.29■■■□□ 2.44
ACTN1-220ENST00000556433 TM4SF1P30408 202 aa30.28■■■□□ 2.44
ACTN1-220ENST00000556433 RSPH6AQ9H0K4 717 aa30.27■■■□□ 2.44
ACTN1-220ENST00000556433 NARFQ9UHQ1 456 aa30.27■■■□□ 2.44
ACTN1-220ENST00000556433 VIRMAQ69YN4 1812 aaKnown RBP30.26■■■□□ 2.44
ACTN1-220ENST00000556433 SENP3-EIF4A1A0A087X0R7 540 aa30.26■■■□□ 2.43
ACTN1-220ENST00000556433 STARD3NLO95772 234 aa30.26■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms