RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 PALLDQ8WX93 1383 aa14.3□□□□□ -0.12
SHMT2-218ENST00000555213 KAT6BQ8WYB5 2073 aa14.3□□□□□ -0.12
SHMT2-218ENST00000555213 APAF1O14727 1248 aa14.29□□□□□ -0.12
SHMT2-218ENST00000555213 HMGB2P26583 209 aaKnown RBP14.29□□□□□ -0.12
SHMT2-218ENST00000555213 EN1Q05925 392 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-218ENST00000555213 NEUROD2Q15784 382 aa14.29□□□□□ -0.12
SHMT2-218ENST00000555213 MCM10Q7L590 875 aa14.29□□□□□ -0.12
SHMT2-218ENST00000555213 NFATC2IPQ8NCF5 419 aa14.29□□□□□ -0.12
SHMT2-218ENST00000555213 RRP7AQ9Y3A4 280 aaKnown RBP14.29□□□□□ -0.12
SHMT2-218ENST00000555213 ITGB4P16144 1822 aa14.29□□□□□ -0.12
SHMT2-218ENST00000555213 EP400Q96L91 3159 aa14.28□□□□□ -0.12
SHMT2-218ENST00000555213 IL17REQ8NFR9 667 aa14.28□□□□□ -0.12
SHMT2-218ENST00000555213 CALD1Q05682 793 aaKnown RBP14.27□□□□□ -0.13
SHMT2-218ENST00000555213 SLC27A3Q5K4L6 730 aa14.27□□□□□ -0.13
SHMT2-218ENST00000555213 TTC5Q8N0Z6 440 aa14.27□□□□□ -0.13
SHMT2-218ENST00000555213 CAMKK2Q96RR4 588 aa14.27□□□□□ -0.13
SHMT2-218ENST00000555213 DCTN1Q14203 1278 aa14.26□□□□□ -0.13
SHMT2-218ENST00000555213 EZH2Q15910 746 aaKnown RBP14.26□□□□□ -0.13
SHMT2-218ENST00000555213 NGEFQ8N5V2 710 aa14.26□□□□□ -0.13
SHMT2-218ENST00000555213 CCNL1Q9UK58 526 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-218ENST00000555213 DLG5Q8TDM6 1919 aa14.25□□□□□ -0.13
SHMT2-218ENST00000555213 ZNF521Q96K83 1311 aa14.25□□□□□ -0.13
SHMT2-218ENST00000555213 BTBD11A6QL63 1104 aa14.25□□□□□ -0.13
SHMT2-218ENST00000555213 TXNRD1Q16881 649 aa14.25□□□□□ -0.13
SHMT2-218ENST00000555213 ATG3Q9NT62 314 aa14.25□□□□□ -0.13
SHMT2-218ENST00000555213 ASAP1Q9ULH1 1129 aa14.25□□□□□ -0.13
SHMT2-218ENST00000555213 VIRMAQ69YN4 1812 aaKnown RBP14.25□□□□□ -0.13
SHMT2-218ENST00000555213 RREB1Q92766 1687 aa14.24□□□□□ -0.13
SHMT2-218ENST00000555213 PAPPAQ13219 1627 aa14.24□□□□□ -0.13
SHMT2-218ENST00000555213 NCBP3Q53F19 620 aaKnown RBP14.24□□□□□ -0.13
SHMT2-218ENST00000555213 THUMPD2Q9BTF0 503 aaKnown RBP14.24□□□□□ -0.13
SHMT2-218ENST00000555213 SALL2Q9Y467 1007 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-218ENST00000555213 LOC102724428A0A0B4J2F2 783 aa14.23□□□□□ -0.13
SHMT2-218ENST00000555213 SIK1P57059 783 aa14.23□□□□□ -0.13
SHMT2-218ENST00000555213 TAF7Q15545 349 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-218ENST00000555213 RBM42Q9BTD8 480 aaKnown RBP14.23□□□□□ -0.13
SHMT2-218ENST00000555213 TRIM35Q9UPQ4 493 aa14.23□□□□□ -0.13
SHMT2-218ENST00000555213 LY75O60449 1722 aa14.23□□□□□ -0.13
SHMT2-218ENST00000555213 SIPA1L3O60292 1781 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-218ENST00000555213 CCDC27Q2M243 656 aa14.22□□□□□ -0.13
SHMT2-218ENST00000555213 NBPF14Q5TI25 921 aa14.22□□□□□ -0.13
SHMT2-218ENST00000555213 ZNF790Q6PG37 636 aa14.22□□□□□ -0.13
SHMT2-218ENST00000555213 PTCD1O75127 700 aaKnown RBP14.21□□□□□ -0.13
SHMT2-218ENST00000555213 SLC39A6Q13433 755 aa14.21□□□□□ -0.13
SHMT2-218ENST00000555213 CDCA7LQ96GN5 454 aa14.21□□□□□ -0.13
SHMT2-218ENST00000555213 BABAM1Q9NWV8 329 aa14.21□□□□□ -0.13
SHMT2-218ENST00000555213 NUP188Q5SRE5 1749 aa14.21□□□□□ -0.14
SHMT2-218ENST00000555213 ATP6V1AP38606 617 aa14.2□□□□□ -0.14
SHMT2-218ENST00000555213 FMNL2Q96PY5 1086 aa14.2□□□□□ -0.14
SHMT2-218ENST00000555213 STK32BQ9NY57 414 aa14.2□□□□□ -0.14
SHMT2-218ENST00000555213 TSPYL4Q9UJ04 414 aa14.2□□□□□ -0.14
SHMT2-218ENST00000555213 KCPQ6ZWJ8 1503 aa14.2□□□□□ -0.14
SHMT2-218ENST00000555213 TRMT2AQ8IZ69 625 aaKnown RBP14.19□□□□□ -0.14
SHMT2-218ENST00000555213 PROM2Q8N271 834 aa14.19□□□□□ -0.14
SHMT2-218ENST00000555213 LAS1LQ9Y4W2 734 aaKnown RBP14.19□□□□□ -0.14
SHMT2-218ENST00000555213 ZNF831Q5JPB2 1677 aa14.19□□□□□ -0.14
SHMT2-218ENST00000555213 C5P01031 1676 aa14.18□□□□□ -0.14
SHMT2-218ENST00000555213 GNAI1P63096 354 aa14.18□□□□□ -0.14
SHMT2-218ENST00000555213 WWC1Q8IX03 1113 aa14.18□□□□□ -0.14
SHMT2-218ENST00000555213 VSIG10Q8N0Z9 540 aa14.18□□□□□ -0.14
SHMT2-218ENST00000555213 SPINK5Q9NQ38 1064 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-218ENST00000555213 LRRC4BQ9NT99 713 aa14.18□□□□□ -0.14
SHMT2-218ENST00000555213 IFT57Q9NWB7 429 aa14.18□□□□□ -0.14
SHMT2-218ENST00000555213 UBR2Q8IWV8 1755 aa14.18□□□□□ -0.14
SHMT2-218ENST00000555213 CICQ96RK0 1608 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-218ENST00000555213 LRP5O75197 1615 aa14.17□□□□□ -0.14
SHMT2-218ENST00000555213 ZNF496Q96IT1 587 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-218ENST00000555213 AK7Q96M32 723 aa14.17□□□□□ -0.14
SHMT2-218ENST00000555213 CFAP44Q96MT7 982 aa14.17□□□□□ -0.14
SHMT2-218ENST00000555213 HEG1Q9ULI3 1381 aa14.17□□□□□ -0.14
SHMT2-218ENST00000555213 KDM3BQ7LBC6 1761 aa14.17□□□□□ -0.14
SHMT2-218ENST00000555213 IL16Q14005 1332 aa14.16□□□□□ -0.14
SHMT2-218ENST00000555213 KCNQ4P56696 695 aa14.16□□□□□ -0.14
SHMT2-218ENST00000555213 WDR63Q8IWG1 891 aa14.16□□□□□ -0.14
SHMT2-218ENST00000555213 TEX13AQ9BXU3 409 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-218ENST00000555213 MIS18AQ9NYP9 233 aa14.16□□□□□ -0.14
SHMT2-218ENST00000555213 CHL1O00533 1208 aa14.15□□□□□ -0.14
SHMT2-218ENST00000555213 STARD3NLO95772 234 aa14.15□□□□□ -0.14
SHMT2-218ENST00000555213 SLFN5Q08AF3 891 aa14.15□□□□□ -0.14
SHMT2-218ENST00000555213 ITPK1Q13572 414 aa14.15□□□□□ -0.14
SHMT2-218ENST00000555213 C4BP0C0L5 1744 aa14.15□□□□□ -0.14
SHMT2-218ENST00000555213 CNTNAP4Q9C0A0 1308 aa14.15□□□□□ -0.15
SHMT2-218ENST00000555213 KCNQ3O43525 872 aa14.14□□□□□ -0.15
SHMT2-218ENST00000555213 SNRPA1P09661 255 aaKnown RBP14.14□□□□□ -0.15
SHMT2-218ENST00000555213 SLC15A2Q16348 729 aa14.14□□□□□ -0.15
SHMT2-218ENST00000555213 DNAJC10Q8IXB1 793 aa14.14□□□□□ -0.15
SHMT2-218ENST00000555213 LINC00116Q8NCU8 138 aa14.14□□□□□ -0.15
SHMT2-218ENST00000555213 SLC4A9Q96Q91 983 aa14.14□□□□□ -0.15
SHMT2-218ENST00000555213 ANO8Q9HCE9 1232 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-218ENST00000555213 TFCP2L1Q9NZI6 479 aa14.14□□□□□ -0.15
SHMT2-218ENST00000555213 TJP1Q07157 1748 aa14.14□□□□□ -0.15
SHMT2-218ENST00000555213 EIF4A1P60842 406 aaKnown RBP14.13□□□□□ -0.15
SHMT2-218ENST00000555213 DUSP27Q5VZP5 1158 aa14.13□□□□□ -0.15
SHMT2-218ENST00000555213 MYH16Q9H6N6 1097 aa14.13□□□□□ -0.15
SHMT2-218ENST00000555213 MBIPQ9NS73 344 aa14.13□□□□□ -0.15
SHMT2-218ENST00000555213 COL5A3P25940 1745 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-218ENST00000555213 GNPATO15228 680 aa14.12□□□□□ -0.15
SHMT2-218ENST00000555213 ZNF853P0CG23 659 aa14.12□□□□□ -0.15
SHMT2-218ENST00000555213 GOLGA2Q08379 1002 aa14.12□□□□□ -0.15
SHMT2-218ENST00000555213 ZNF827Q17R98 1081 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 1142.6 ms