RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 SCN11AQ9UI33 1791 aa16.66■□□□□ 0.26
SHMT2-214ENST00000554604 POLD1P28340 1107 aa16.65■□□□□ 0.26
SHMT2-214ENST00000554604 AK7Q96M32 723 aa16.65■□□□□ 0.26
SHMT2-214ENST00000554604 ARXQ96QS3 562 aa16.65■□□□□ 0.26
SHMT2-214ENST00000554604 KDM6AO15550 1401 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-214ENST00000554604 U2SURPO15042 1029 aaKnown RBP16.64■□□□□ 0.25
SHMT2-214ENST00000554604 ATP6V1AP38606 617 aa16.64■□□□□ 0.25
SHMT2-214ENST00000554604 FLAD1Q8NFF5 587 aa16.64■□□□□ 0.25
SHMT2-214ENST00000554604 CFAP53Q96M91 514 aa16.64■□□□□ 0.25
SHMT2-214ENST00000554604 SGIP1Q9BQI5 828 aa16.64■□□□□ 0.25
SHMT2-214ENST00000554604 ATG3Q9NT62 314 aa16.64■□□□□ 0.25
SHMT2-214ENST00000554604 UBR3Q6ZT12 1888 aa16.64■□□□□ 0.25
SHMT2-214ENST00000554604 COL23A1Q86Y22 540 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-214ENST00000554604 FHDC1Q9C0D6 1143 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-214ENST00000554604 COL24A1Q17RW2 1714 aa16.62■□□□□ 0.25
SHMT2-214ENST00000554604 AKAP4Q5JQC9 854 aa16.62■□□□□ 0.25
SHMT2-214ENST00000554604 RBM42Q9BTD8 480 aaKnown RBP16.62■□□□□ 0.25
SHMT2-214ENST00000554604 COL3A1P02461 1466 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-214ENST00000554604 NFATC2IPQ8NCF5 419 aa16.61■□□□□ 0.25
SHMT2-214ENST00000554604 SYT17Q9BSW7 474 aa16.61■□□□□ 0.25
SHMT2-214ENST00000554604 KLHL34Q8N239 644 aa16.6■□□□□ 0.25
SHMT2-214ENST00000554604 LINC00116Q8NCU8 138 aa16.6■□□□□ 0.25
SHMT2-214ENST00000554604 ZNF831Q5JPB2 1677 aa16.59■□□□□ 0.25
SHMT2-214ENST00000554604 PHF14O94880 888 aa16.59■□□□□ 0.25
SHMT2-214ENST00000554604 ITPK1Q13572 414 aa16.59■□□□□ 0.25
SHMT2-214ENST00000554604 GNPATO15228 680 aa16.58■□□□□ 0.24
SHMT2-214ENST00000554604 PTCD1O75127 700 aaKnown RBP16.58■□□□□ 0.24
SHMT2-214ENST00000554604 PPP2R1AP30153 589 aa16.58■□□□□ 0.24
SHMT2-214ENST00000554604 MTHFSDQ2M296 383 aaKnown RBP16.58■□□□□ 0.24
SHMT2-214ENST00000554604 MSL1Q68DK7 614 aa16.58■□□□□ 0.24
SHMT2-214ENST00000554604 NUDCQ9Y266 331 aa16.58■□□□□ 0.24
SHMT2-214ENST00000554604 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.57■□□□□ 0.24
SHMT2-214ENST00000554604 SSFA2P28290 1259 aa16.57■□□□□ 0.24
SHMT2-214ENST00000554604 COL5A3P25940 1745 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-214ENST00000554604 LGR6Q9HBX8 967 aa16.56■□□□□ 0.24
SHMT2-214ENST00000554604 MYH14Q7Z406 1995 aaKnown RBP16.55■□□□□ 0.24
SHMT2-214ENST00000554604 MAP3K5Q99683 1374 aa16.55■□□□□ 0.24
SHMT2-214ENST00000554604 RNMTO43148 476 aaKnown RBP16.55■□□□□ 0.24
SHMT2-214ENST00000554604 SMIM5Q71RC9 77 aa16.55■□□□□ 0.24
SHMT2-214ENST00000554604 AMIGO3Q86WK7 504 aa16.55■□□□□ 0.24
SHMT2-214ENST00000554604 SLC4A9Q96Q91 983 aa16.55■□□□□ 0.24
SHMT2-214ENST00000554604 SLC52A2Q9HAB3 445 aa16.55■□□□□ 0.24
SHMT2-214ENST00000554604 GAS2L2Q8NHY3 880 aa16.54■□□□□ 0.24
SHMT2-214ENST00000554604 RTCBQ9Y3I0 505 aaKnown RBP16.54■□□□□ 0.24
SHMT2-214ENST00000554604 U2AF1L5P0DN76 240 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-214ENST00000554604 U2AF1Q01081 240 aaKnown RBP eCLIP16.53■□□□□ 0.24
SHMT2-214ENST00000554604 ADAMTS7Q9UKP4 1686 aa16.53■□□□□ 0.24
SHMT2-214ENST00000554604 GNAT3A8MTJ3 354 aa16.52■□□□□ 0.24
SHMT2-214ENST00000554604 PRKAR2BP31323 418 aa16.52■□□□□ 0.24
SHMT2-214ENST00000554604 TRAPPC3LQ5T215 181 aa16.52■□□□□ 0.24
SHMT2-214ENST00000554604 RC3H1Q5TC82 1133 aaKnown RBP16.52■□□□□ 0.24
SHMT2-214ENST00000554604 MRC1P22897 1456 aa16.52■□□□□ 0.23
SHMT2-214ENST00000554604 CHD4Q14839 1912 aa16.52■□□□□ 0.23
SHMT2-214ENST00000554604 CNTNAP4Q9C0A0 1308 aa16.51■□□□□ 0.23
SHMT2-214ENST00000554604 TJP1Q07157 1748 aa16.51■□□□□ 0.23
SHMT2-214ENST00000554604 RSPH6AQ9H0K4 717 aa16.51■□□□□ 0.23
SHMT2-214ENST00000554604 TEFQ10587 303 aa16.5■□□□□ 0.23
SHMT2-214ENST00000554604 SLC39A6Q13433 755 aa16.5■□□□□ 0.23
SHMT2-214ENST00000554604 PRKRIP1Q9H875 184 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-214ENST00000554604 CICQ96RK0 1608 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-214ENST00000554604 RPS6KA4O75676 772 aa16.49■□□□□ 0.23
SHMT2-214ENST00000554604 FCHSD2O94868 740 aa16.49■□□□□ 0.23
SHMT2-214ENST00000554604 ADRA2BP18089 450 aa16.49■□□□□ 0.23
SHMT2-214ENST00000554604 YY1P25490 414 aa16.49■□□□□ 0.23
SHMT2-214ENST00000554604 CRKLP46109 303 aaKnown RBP16.49■□□□□ 0.23
SHMT2-214ENST00000554604 GPR162Q16538 588 aa16.49■□□□□ 0.23
SHMT2-214ENST00000554604 PELP1Q8IZL8 1130 aaKnown RBP16.49■□□□□ 0.23
SHMT2-214ENST00000554604 PHACTR3Q96KR7 559 aa16.49■□□□□ 0.23
SHMT2-214ENST00000554604 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
SHMT2-214ENST00000554604 UTRNP46939 3433 aa16.48■□□□□ 0.23
SHMT2-214ENST00000554604 C4AP0C0L4 1744 aa16.48■□□□□ 0.23
SHMT2-214ENST00000554604 RFC4P35249 363 aa16.48■□□□□ 0.23
SHMT2-214ENST00000554604 TTC5Q8N0Z6 440 aa16.48■□□□□ 0.23
SHMT2-214ENST00000554604 NLGN2Q8NFZ4 835 aa16.48■□□□□ 0.23
SHMT2-214ENST00000554604 SIPA1L3O60292 1781 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-214ENST00000554604 GOLGB1Q14789 3259 aaKnown RBP16.48■□□□□ 0.23
SHMT2-214ENST00000554604 UBR2Q8IWV8 1755 aa16.47■□□□□ 0.23
SHMT2-214ENST00000554604 NEFMP07197 916 aa16.47■□□□□ 0.23
SHMT2-214ENST00000554604 IL17REQ8NFR9 667 aa16.47■□□□□ 0.23
SHMT2-214ENST00000554604 ARHGEF1Q92888 912 aaKnown RBP16.47■□□□□ 0.23
SHMT2-214ENST00000554604 DNAJC10Q8IXB1 793 aa16.46■□□□□ 0.23
SHMT2-214ENST00000554604 RTF1Q92541 710 aaKnown RBP16.46■□□□□ 0.23
SHMT2-214ENST00000554604 CD2APQ9Y5K6 639 aa16.46■□□□□ 0.23
SHMT2-214ENST00000554604 KCPQ6ZWJ8 1503 aa16.45■□□□□ 0.22
SHMT2-214ENST00000554604 NLGN1Q8N2Q7 840 aa16.45■□□□□ 0.22
SHMT2-214ENST00000554604 CCDC87Q9NVE4 849 aa16.45■□□□□ 0.22
SHMT2-214ENST00000554604 MMP10P09238 476 aa16.44■□□□□ 0.22
SHMT2-214ENST00000554604 RALBP1Q15311 655 aa16.44■□□□□ 0.22
SHMT2-214ENST00000554604 VSIG10Q8N0Z9 540 aa16.44■□□□□ 0.22
SHMT2-214ENST00000554604 DLG5Q8TDM6 1919 aa16.44■□□□□ 0.22
SHMT2-214ENST00000554604 INTS5Q6P9B9 1019 aaKnown RBP16.43■□□□□ 0.22
SHMT2-214ENST00000554604 CEMIPQ8WUJ3 1361 aa16.42■□□□□ 0.22
SHMT2-214ENST00000554604 CYP19A1P11511 503 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-214ENST00000554604 GYS1P13807 737 aa16.42■□□□□ 0.22
SHMT2-214ENST00000554604 ZNF790Q6PG37 636 aa16.42■□□□□ 0.22
SHMT2-214ENST00000554604 BTBD11A6QL63 1104 aa16.41■□□□□ 0.22
SHMT2-214ENST00000554604 STARD3NLO95772 234 aa16.41■□□□□ 0.22
SHMT2-214ENST00000554604 PNNQ9H307 717 aaKnown RBP16.41■□□□□ 0.22
SHMT2-214ENST00000554604 ZPR1O75312 459 aa16.4■□□□□ 0.22
SHMT2-214ENST00000554604 MCM10Q7L590 875 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms