RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 INTS3Q68E01 1043 aaKnown RBP14.64□□□□□ -0.07
SHMT2-212ENST00000554467 HDGFL1Q5TGJ6 251 aa14.64□□□□□ -0.07
SHMT2-212ENST00000554467 PHAXQ9H814 394 aaKnown RBP14.64□□□□□ -0.07
SHMT2-212ENST00000554467 BTBD11A6QL63 1104 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 FLIIQ13045 1269 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 KIF1AQ12756 1690 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 NUCB1Q02818 461 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 CHD1LQ86WJ1 897 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 AKAP4Q5JQC9 854 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 CCDC30Q5VVM6 783 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 ZMYND15Q9H091 742 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 PTPRCP08575 1304 aa14.63□□□□□ -0.07
SHMT2-212ENST00000554467 PRAMEF22A3QJZ6 481 aa14.62□□□□□ -0.07
SHMT2-212ENST00000554467 FRAT2O75474 233 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-212ENST00000554467 STRCQ7RTU9 1775 aa14.62□□□□□ -0.07
SHMT2-212ENST00000554467 RRAGDQ9NQL2 400 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-212ENST00000554467 SLAIN2Q9P270 581 aa14.62□□□□□ -0.07
SHMT2-212ENST00000554467 ALS2Q96Q42 1657 aa14.62□□□□□ -0.07
SHMT2-212ENST00000554467 CEMIPQ8WUJ3 1361 aa14.62□□□□□ -0.07
SHMT2-212ENST00000554467 RNMTO43148 476 aaKnown RBP14.62□□□□□ -0.07
SHMT2-212ENST00000554467 LRRC37A3O60309 1634 aa14.61□□□□□ -0.07
SHMT2-212ENST00000554467 SPATA31A3Q5VYP0 1347 aa14.61□□□□□ -0.07
SHMT2-212ENST00000554467 RAPGEF4Q8WZA2 1011 aa14.61□□□□□ -0.07
SHMT2-212ENST00000554467 DDRGK1Q96HY6 314 aa14.61□□□□□ -0.07
SHMT2-212ENST00000554467 EIF4A1P60842 406 aaKnown RBP14.61□□□□□ -0.07
SHMT2-212ENST00000554467 XIRP1Q702N8 1843 aaKnown RBP14.61□□□□□ -0.07
SHMT2-212ENST00000554467 TNS3Q68CZ2 1445 aa14.61□□□□□ -0.07
SHMT2-212ENST00000554467 AMOTQ4VCS5 1084 aa14.6□□□□□ -0.07
SHMT2-212ENST00000554467 CHPF2Q9P2E5 772 aa14.6□□□□□ -0.07
SHMT2-212ENST00000554467 DCCP43146 1447 aa14.6□□□□□ -0.07
SHMT2-212ENST00000554467 SLC39A6Q13433 755 aa14.6□□□□□ -0.07
SHMT2-212ENST00000554467 CHMP4BQ9H444 224 aaKnown RBP14.6□□□□□ -0.07
SHMT2-212ENST00000554467 C16orf71Q8IYS4 520 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-212ENST00000554467 SMARCA5O60264 1052 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-212ENST00000554467 CEP85Q6P2H3 762 aa14.59□□□□□ -0.07
SHMT2-212ENST00000554467 PHRF1Q9P1Y6 1649 aaKnown RBP14.58□□□□□ -0.08
SHMT2-212ENST00000554467 MFAP1P55081 439 aaKnown RBP14.58□□□□□ -0.08
SHMT2-212ENST00000554467 PRDM11Q9NQV5 511 aa14.57□□□□□ -0.08
SHMT2-212ENST00000554467 VSIG10Q8N0Z9 540 aa14.57□□□□□ -0.08
SHMT2-212ENST00000554467 OTUD7AQ8TE49 926 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-212ENST00000554467 GCC1Q96CN9 775 aa14.57□□□□□ -0.08
SHMT2-212ENST00000554467 ATP10DQ9P241 1426 aa14.57□□□□□ -0.08
SHMT2-212ENST00000554467 PROSER3Q2NL68 480 aa14.56□□□□□ -0.08
SHMT2-212ENST00000554467 ANKRD44Q8N8A2 993 aa14.56□□□□□ -0.08
SHMT2-212ENST00000554467 MEGF6O75095 1541 aa14.56□□□□□ -0.08
SHMT2-212ENST00000554467 TATP17735 454 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-212ENST00000554467 CCT4P50991 539 aaKnown RBP14.56□□□□□ -0.08
SHMT2-212ENST00000554467 NFATC2IPQ8NCF5 419 aa14.56□□□□□ -0.08
SHMT2-212ENST00000554467 NCOA3Q9Y6Q9 1424 aa14.55□□□□□ -0.08
SHMT2-212ENST00000554467 STRN4Q9NRL3 753 aa14.55□□□□□ -0.08
SHMT2-212ENST00000554467 FAM208AQ9UK61 1670 aaKnown RBP14.54□□□□□ -0.08
SHMT2-212ENST00000554467 PIP4K2AP48426 406 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-212ENST00000554467 DCTPP1Q9H773 170 aa14.54□□□□□ -0.08
SHMT2-212ENST00000554467 PI4KAP2A4QPH2 592 aa14.54□□□□□ -0.08
SHMT2-212ENST00000554467 PI4KAP1Q8N8J0 262 aa14.54□□□□□ -0.08
SHMT2-212ENST00000554467 BABAM1Q9NWV8 329 aa14.54□□□□□ -0.08
SHMT2-212ENST00000554467 EXOC6BQ9Y2D4 811 aa14.54□□□□□ -0.08
SHMT2-212ENST00000554467 NCAPD2Q15021 1401 aa14.54□□□□□ -0.08
SHMT2-212ENST00000554467 CYP27B1O15528 508 aa14.53□□□□□ -0.08
SHMT2-212ENST00000554467 TOM1L2Q6ZVM7 507 aa14.53□□□□□ -0.08
SHMT2-212ENST00000554467 LRRFIP2Q9Y608 721 aaKnown RBP14.53□□□□□ -0.08
SHMT2-212ENST00000554467 VIRMAQ69YN4 1812 aaKnown RBP14.53□□□□□ -0.08
SHMT2-212ENST00000554467 PHKG2P15735 406 aa14.53□□□□□ -0.08
SHMT2-212ENST00000554467 LMO7Q8WWI1 1683 aa14.53□□□□□ -0.08
SHMT2-212ENST00000554467 AIMP1Q12904 312 aaKnown RBP14.53□□□□□ -0.08
SHMT2-212ENST00000554467 SLKQ9H2G2 1235 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-212ENST00000554467 PNMA6EA0A0J9YXQ4 647 aa14.52□□□□□ -0.08
SHMT2-212ENST00000554467 GIGYF1O75420 1035 aaPredicted RBP14.52□□□□□ -0.08
SHMT2-212ENST00000554467 GNAI2P04899 355 aa14.52□□□□□ -0.08
SHMT2-212ENST00000554467 RPAP2Q8IXW5 612 aaPredicted RBP14.52□□□□□ -0.08
SHMT2-212ENST00000554467 SPRYD3Q8NCJ5 442 aa14.52□□□□□ -0.08
SHMT2-212ENST00000554467 ARXQ96QS3 562 aa14.52□□□□□ -0.09
SHMT2-212ENST00000554467 UPF2Q9HAU5 1272 aaKnown RBP14.52□□□□□ -0.09
SHMT2-212ENST00000554467 SPG7Q9UQ90 795 aa14.51□□□□□ -0.09
SHMT2-212ENST00000554467 KDM6AO15550 1401 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-212ENST00000554467 TSHZ3Q63HK5 1081 aa14.51□□□□□ -0.09
SHMT2-212ENST00000554467 USP44Q9H0E7 712 aa14.51□□□□□ -0.09
SHMT2-212ENST00000554467 COL18A1P39060 1754 aa14.51□□□□□ -0.09
SHMT2-212ENST00000554467 SOS2Q07890 1332 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-212ENST00000554467 MYL6BP14649 208 aa14.5□□□□□ -0.09
SHMT2-212ENST00000554467 PLEKHM2Q8IWE5 1019 aa14.5□□□□□ -0.09
SHMT2-212ENST00000554467 IFNL2Q8IZJ0 200 aa14.5□□□□□ -0.09
SHMT2-212ENST00000554467 TBC1D32Q96NH3 1257 aa14.5□□□□□ -0.09
SHMT2-212ENST00000554467 SLC52A2Q9HAB3 445 aa14.5□□□□□ -0.09
SHMT2-212ENST00000554467 KDM3BQ7LBC6 1761 aa14.49□□□□□ -0.09
SHMT2-212ENST00000554467 NBPF7P0C2Y1 421 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-212ENST00000554467 GSPT1P15170 499 aaKnown RBP14.49□□□□□ -0.09
SHMT2-212ENST00000554467 ZNF790Q6PG37 636 aa14.49□□□□□ -0.09
SHMT2-212ENST00000554467 UBTFL1P0CB47 393 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-212ENST00000554467 LARP1Q6PKG0 1096 aaKnown RBP14.48□□□□□ -0.09
SHMT2-212ENST00000554467 DDX54Q8TDD1 881 aaKnown RBP14.48□□□□□ -0.09
SHMT2-212ENST00000554467 ZNF496Q96IT1 587 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-212ENST00000554467 SRCIN1Q9C0H9 1055 aa14.48□□□□□ -0.09
SHMT2-212ENST00000554467 DNAAF4Q8WXU2 420 aa14.48□□□□□ -0.09
SHMT2-212ENST00000554467 CAMTA1Q9Y6Y1 1673 aa14.48□□□□□ -0.09
SHMT2-212ENST00000554467 DBF4Q9UBU7 674 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-212ENST00000554467 MAP3K2Q9Y2U5 619 aa14.48□□□□□ -0.09
SHMT2-212ENST00000554467 GNAI3P08754 354 aa14.47□□□□□ -0.09
SHMT2-212ENST00000554467 CWF19L2Q2TBE0 894 aaKnown RBP14.47□□□□□ -0.09
SHMT2-212ENST00000554467 BMP2KLQ5H9B9 411 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms