RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 MIS18AQ9NYP9 233 aa21.34■■□□□ 1.01
SYNE3-202ENST00000553340 SALL3Q9BXA9 1300 aa21.34■■□□□ 1.01
SYNE3-202ENST00000553340 TSPYL4Q9UJ04 414 aa21.34■■□□□ 1.01
SYNE3-202ENST00000553340 MX1P20591 662 aa21.33■■□□□ 1.01
SYNE3-202ENST00000553340 SYAP1Q96A49 352 aaPredicted RBP21.33■■□□□ 1.01
SYNE3-202ENST00000553340 TTC21BQ7Z4L5 1316 aa21.33■■□□□ 1.01
SYNE3-202ENST00000553340 PRR36Q9H6K5 1346 aa21.33■■□□□ 1.01
SYNE3-202ENST00000553340 HSP90AB2PQ58FF8 381 aa21.33■■□□□ 1
SYNE3-202ENST00000553340 TSHZ3Q63HK5 1081 aa21.33■■□□□ 1
SYNE3-202ENST00000553340 ZMYND15Q9H091 742 aa21.33■■□□□ 1
SYNE3-202ENST00000553340 ANO2Q9NQ90 1003 aa21.33■■□□□ 1
SYNE3-202ENST00000553340 RTF1Q92541 710 aaKnown RBP21.32■■□□□ 1
SYNE3-202ENST00000553340 TECPR2O15040 1411 aa21.32■■□□□ 1
SYNE3-202ENST00000553340 PALD1Q9ULE6 856 aa21.32■■□□□ 1
SYNE3-202ENST00000553340 CHMLP26374 656 aa21.31■■□□□ 1
SYNE3-202ENST00000553340 SSH2Q76I76 1423 aa21.31■■□□□ 1
SYNE3-202ENST00000553340 TRIM6-TRIM34B2RNG4 842 aa21.31■■□□□ 1
SYNE3-202ENST00000553340 RNF214Q8ND24 703 aa21.31■■□□□ 1
SYNE3-202ENST00000553340 RILPL2Q969X0 211 aa21.31■■□□□ 1
SYNE3-202ENST00000553340 STK31Q9BXU1 1019 aa21.31■■□□□ 1
SYNE3-202ENST00000553340 TSPY26PQ9H489 355 aa21.31■■□□□ 1
SYNE3-202ENST00000553340 GNAI3P08754 354 aa21.3■■□□□ 1
SYNE3-202ENST00000553340 OVOS2A0A0J9YW53 1432 aa21.3■■□□□ 1
SYNE3-202ENST00000553340 OVOS2Q6IE36 1432 aa21.3■■□□□ 1
SYNE3-202ENST00000553340 RGPD1P0DJD0 1748 aa21.3■■□□□ 1
SYNE3-202ENST00000553340 SRCIN1Q9C0H9 1055 aa21.29■■□□□ 1
SYNE3-202ENST00000553340 ARHGEF10O15013 1369 aa21.29■■□□□ 1
SYNE3-202ENST00000553340 NOL8Q76FK4 1167 aaKnown RBP21.29■■□□□ 1
SYNE3-202ENST00000553340 TUBGCP6Q96RT7 1819 aa21.29■■□□□ 1
SYNE3-202ENST00000553340 MAP7D2Q96T17 732 aa21.28■■□□□ 1
SYNE3-202ENST00000553340 AGLP35573 1532 aa21.28■■□□□ 1
SYNE3-202ENST00000553340 PHF14O94880 888 aa21.28■■□□□ 1
SYNE3-202ENST00000553340 ATP8B2P98198 1209 aa21.28■■□□□ 1
SYNE3-202ENST00000553340 IL17RAQ96F46 866 aa21.28■■□□□ 1
SYNE3-202ENST00000553340 PKNOX2Q96KN3 472 aa21.28■■□□□ 1
SYNE3-202ENST00000553340 RBM10P98175 930 aaKnown RBP21.27■■□□□ 1
SYNE3-202ENST00000553340 STAP2Q9UGK3 403 aa21.27■■□□□ 1
SYNE3-202ENST00000553340 ACEP12821 1306 aa21.27■■□□□ 1
SYNE3-202ENST00000553340 UQCRHLA0A096LP55 91 aa21.27■■□□□ 1
SYNE3-202ENST00000553340 FOXO3O43524 673 aa21.27■■□□□ 1
SYNE3-202ENST00000553340 UQCRHP07919 91 aa21.27■■□□□ 1
SYNE3-202ENST00000553340 MTHFSDQ2M296 383 aaKnown RBP21.27■■□□□ 1
SYNE3-202ENST00000553340 PEAK1Q9H792 1746 aa21.27■■□□□ 1
SYNE3-202ENST00000553340 HDGFP51858 240 aaKnown RBP21.26■□□□□ 0.99
SYNE3-202ENST00000553340 MAP3K19Q56UN5 1328 aa21.26■□□□□ 0.99
SYNE3-202ENST00000553340 PNMA6EA0A0J9YXQ4 647 aa21.26■□□□□ 0.99
SYNE3-202ENST00000553340 WDR33Q9C0J8 1336 aaKnown RBP21.26■□□□□ 0.99
SYNE3-202ENST00000553340 PTMAP06454 111 aaKnown RBP21.25■□□□□ 0.99
SYNE3-202ENST00000553340 FKBP5Q13451 457 aaPredicted RBP21.25■□□□□ 0.99
SYNE3-202ENST00000553340 EPB41L2O43491 1005 aaKnown RBP21.25■□□□□ 0.99
SYNE3-202ENST00000553340 FLIIQ13045 1269 aa21.25■□□□□ 0.99
SYNE3-202ENST00000553340 UPF3BQ9BZI7 483 aaKnown RBP21.25■□□□□ 0.99
SYNE3-202ENST00000553340 FAM13BQ9NYF5 915 aa21.25■□□□□ 0.99
SYNE3-202ENST00000553340 USP31Q70CQ4 1352 aa21.24■□□□□ 0.99
SYNE3-202ENST00000553340 CCDC30Q5VVM6 783 aa21.24■□□□□ 0.99
SYNE3-202ENST00000553340 AOX1Q06278 1338 aa21.23■□□□□ 0.99
SYNE3-202ENST00000553340 PLEKHG3A1L390 1219 aa21.23■□□□□ 0.99
SYNE3-202ENST00000553340 SOX12O15370 315 aa21.23■□□□□ 0.99
SYNE3-202ENST00000553340 NALCNQ8IZF0 1738 aa21.23■□□□□ 0.99
SYNE3-202ENST00000553340 USP6P35125 1406 aa21.23■□□□□ 0.99
SYNE3-202ENST00000553340 DYNC1I1O14576 645 aa21.22■□□□□ 0.99
SYNE3-202ENST00000553340 SASS6Q6UVJ0 657 aa21.22■□□□□ 0.99
SYNE3-202ENST00000553340 FAM184AQ8NB25 1140 aa21.22■□□□□ 0.99
SYNE3-202ENST00000553340 MLECQ14165 292 aa21.22■□□□□ 0.99
SYNE3-202ENST00000553340 FOXD4L6Q3SYB3 417 aaPredicted RBP21.22■□□□□ 0.99
SYNE3-202ENST00000553340 FOXD4L3Q6VB84 417 aaPredicted RBP21.22■□□□□ 0.99
SYNE3-202ENST00000553340 USP48Q86UV5 1035 aa21.22■□□□□ 0.99
SYNE3-202ENST00000553340 UNC5CLQ8IV45 518 aa21.22■□□□□ 0.99
SYNE3-202ENST00000553340 GADD45BO75293 160 aaPredicted RBP21.21■□□□□ 0.99
SYNE3-202ENST00000553340 HSPA4P34932 840 aa21.21■□□□□ 0.99
SYNE3-202ENST00000553340 GDPD2Q9HCC8 539 aa21.21■□□□□ 0.99
SYNE3-202ENST00000553340 KIAA2012Q0VF49 1180 aa21.21■□□□□ 0.99
SYNE3-202ENST00000553340 LRRFIP2Q9Y608 721 aaKnown RBP21.21■□□□□ 0.99
SYNE3-202ENST00000553340 ROBO2Q9HCK4 1378 aa21.2■□□□□ 0.99
SYNE3-202ENST00000553340 UVSSAQ2YD98 709 aa21.2■□□□□ 0.98
SYNE3-202ENST00000553340 KDRP35968 1356 aa21.2■□□□□ 0.98
SYNE3-202ENST00000553340 MTERF4Q7Z6M4 381 aaKnown RBP21.19■□□□□ 0.98
SYNE3-202ENST00000553340 NUTM2FA1L443 756 aa21.19■□□□□ 0.98
SYNE3-202ENST00000553340 PLEKHG5O94827 1062 aa21.19■□□□□ 0.98
SYNE3-202ENST00000553340 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.19■□□□□ 0.98
SYNE3-202ENST00000553340 HTATSF1O43719 755 aaKnown RBP21.18■□□□□ 0.98
SYNE3-202ENST00000553340 TMEM87AQ8NBN3 555 aa21.18■□□□□ 0.98
SYNE3-202ENST00000553340 FLT4P35916 1363 aa21.18■□□□□ 0.98
SYNE3-202ENST00000553340 XRN1Q8IZH2 1706 aaKnown RBP21.18■□□□□ 0.98
SYNE3-202ENST00000553340 RIMS1Q86UR5 1692 aaKnown RBP21.18■□□□□ 0.98
SYNE3-202ENST00000553340 TOPAZ1Q8N9V7 1692 aa21.18■□□□□ 0.98
SYNE3-202ENST00000553340 SOS1Q07889 1333 aaPredicted RBP21.17■□□□□ 0.98
SYNE3-202ENST00000553340 SBNO1A3KN83 1393 aa21.17■□□□□ 0.98
SYNE3-202ENST00000553340 UBTFL1P0CB47 393 aaPredicted RBP21.17■□□□□ 0.98
SYNE3-202ENST00000553340 CCDC183Q5T5S1 534 aa21.17■□□□□ 0.98
SYNE3-202ENST00000553340 NECTIN2Q92692 538 aa21.17■□□□□ 0.98
SYNE3-202ENST00000553340 IL1RAPL2Q9NP60 686 aa21.17■□□□□ 0.98
SYNE3-202ENST00000553340 FAM208AQ9UK61 1670 aaKnown RBP21.16■□□□□ 0.98
SYNE3-202ENST00000553340 USP44Q9H0E7 712 aa21.16■□□□□ 0.98
SYNE3-202ENST00000553340 IL25Q9H293 177 aa21.16■□□□□ 0.98
SYNE3-202ENST00000553340 FMN2Q9NZ56 1722 aa21.16■□□□□ 0.98
SYNE3-202ENST00000553340 LETM1O95202 739 aaPredicted RBP21.16■□□□□ 0.98
SYNE3-202ENST00000553340 IGSF1Q8N6C5 1336 aa21.15■□□□□ 0.98
SYNE3-202ENST00000553340 RAB11FIP3O75154 756 aa21.15■□□□□ 0.98
SYNE3-202ENST00000553340 SSH3Q8TE77 659 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms