RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 PTF1AQ7RTS3 328 aa28.16■■■□□ 2.1
NEK3-202ENST00000550841 NGEFQ8N5V2 710 aa28.16■■■□□ 2.1
NEK3-202ENST00000550841 SMARCC1Q92922 1105 aaPredicted RBP28.16■■■□□ 2.1
NEK3-202ENST00000550841 LRP5O75197 1615 aa28.16■■■□□ 2.1
NEK3-202ENST00000550841 DLG5Q8TDM6 1919 aa28.15■■■□□ 2.1
NEK3-202ENST00000550841 ITGB4P16144 1822 aa28.15■■■□□ 2.1
NEK3-202ENST00000550841 TNS1Q9HBL0 1735 aaKnown RBP28.14■■■□□ 2.1
NEK3-202ENST00000550841 TOGARAM1Q9Y4F4 1720 aa28.14■■■□□ 2.1
NEK3-202ENST00000550841 ADAMTS7Q9UKP4 1686 aa28.13■■■□□ 2.09
NEK3-202ENST00000550841 DCTN1Q14203 1278 aa28.13■■■□□ 2.09
NEK3-202ENST00000550841 NBPF14Q5TI25 921 aa28.12■■■□□ 2.09
NEK3-202ENST00000550841 VIRMAQ69YN4 1812 aaKnown RBP28.11■■■□□ 2.09
NEK3-202ENST00000550841 TAF7Q15545 349 aaPredicted RBP28.11■■■□□ 2.09
NEK3-202ENST00000550841 TRIM35Q9UPQ4 493 aa28.11■■■□□ 2.09
NEK3-202ENST00000550841 CALD1Q05682 793 aaKnown RBP28.1■■■□□ 2.09
NEK3-202ENST00000550841 CCDC27Q2M243 656 aa28.1■■■□□ 2.09
NEK3-202ENST00000550841 BTAF1O14981 1849 aa28.1■■■□□ 2.09
NEK3-202ENST00000550841 MRC1P22897 1456 aa28.09■■■□□ 2.09
NEK3-202ENST00000550841 HMGB2P26583 209 aaKnown RBP28.09■■■□□ 2.09
NEK3-202ENST00000550841 ATG3Q9NT62 314 aa28.08■■■□□ 2.09
NEK3-202ENST00000550841 BTBD11A6QL63 1104 aa28.07■■■□□ 2.08
NEK3-202ENST00000550841 ASAP1Q9ULH1 1129 aa28.07■■■□□ 2.08
NEK3-202ENST00000550841 THUMPD2Q9BTF0 503 aaKnown RBP28.05■■■□□ 2.08
NEK3-202ENST00000550841 BABAM1Q9NWV8 329 aa28.05■■■□□ 2.08
NEK3-202ENST00000550841 PALLDQ8WX93 1383 aa28.04■■■□□ 2.08
NEK3-202ENST00000550841 TTC5Q8N0Z6 440 aa28.04■■■□□ 2.08
NEK3-202ENST00000550841 SLC27A3Q5K4L6 730 aa28.03■■■□□ 2.08
NEK3-202ENST00000550841 TXNRD1Q16881 649 aa28.02■■■□□ 2.08
NEK3-202ENST00000550841 WWC1Q8IX03 1113 aa28.02■■■□□ 2.08
NEK3-202ENST00000550841 SALL2Q9Y467 1007 aaPredicted RBP28.02■■■□□ 2.08
NEK3-202ENST00000550841 SLC39A6Q13433 755 aa28.01■■■□□ 2.07
NEK3-202ENST00000550841 ZNF790Q6PG37 636 aa28.01■■■□□ 2.07
NEK3-202ENST00000550841 RGPD3A6NKT7 1758 aaPredicted RBP27.99■■■□□ 2.07
NEK3-202ENST00000550841 SIPA1L3O60292 1781 aaPredicted RBP27.99■■■□□ 2.07
NEK3-202ENST00000550841 RGPD4Q7Z3J3 1758 aa27.99■■■□□ 2.07
NEK3-202ENST00000550841 SENP3-EIF4A1A0A087X0R7 540 aa27.99■■■□□ 2.07
NEK3-202ENST00000550841 LOC102724428A0A0B4J2F2 783 aa27.99■■■□□ 2.07
NEK3-202ENST00000550841 SIK1P57059 783 aa27.99■■■□□ 2.07
NEK3-202ENST00000550841 WDR63Q8IWG1 891 aa27.99■■■□□ 2.07
NEK3-202ENST00000550841 RBM42Q9BTD8 480 aaKnown RBP27.99■■■□□ 2.07
NEK3-202ENST00000550841 CCNL1Q9UK58 526 aaPredicted RBP27.99■■■□□ 2.07
NEK3-202ENST00000550841 PROM2Q8N271 834 aa27.98■■■□□ 2.07
NEK3-202ENST00000550841 PTCD1O75127 700 aaKnown RBP27.97■■■□□ 2.07
NEK3-202ENST00000550841 GNAI1P63096 354 aa27.97■■■□□ 2.07
NEK3-202ENST00000550841 CFAP44Q96MT7 982 aa27.97■■■□□ 2.07
NEK3-202ENST00000550841 TSPYL4Q9UJ04 414 aa27.97■■■□□ 2.07
NEK3-202ENST00000550841 LAS1LQ9Y4W2 734 aaKnown RBP27.97■■■□□ 2.07
NEK3-202ENST00000550841 FMNL2Q96PY5 1086 aa27.96■■■□□ 2.07
NEK3-202ENST00000550841 IFT57Q9NWB7 429 aa27.96■■■□□ 2.07
NEK3-202ENST00000550841 MIS18AQ9NYP9 233 aa27.96■■■□□ 2.07
NEK3-202ENST00000550841 IL16Q14005 1332 aa27.95■■■□□ 2.07
NEK3-202ENST00000550841 CHL1O00533 1208 aa27.95■■■□□ 2.06
NEK3-202ENST00000550841 ATP6V1AP38606 617 aa27.95■■■□□ 2.06
NEK3-202ENST00000550841 VSIG10Q8N0Z9 540 aa27.95■■■□□ 2.06
NEK3-202ENST00000550841 LY75O60449 1722 aa27.94■■■□□ 2.06
NEK3-202ENST00000550841 RREB1Q92766 1687 aa27.94■■■□□ 2.06
NEK3-202ENST00000550841 TEX13AQ9BXU3 409 aaPredicted RBP27.92■■■□□ 2.06
NEK3-202ENST00000550841 KCNQ3O43525 872 aa27.91■■■□□ 2.06
NEK3-202ENST00000550841 ZNF853P0CG23 659 aa27.91■■■□□ 2.06
NEK3-202ENST00000550841 ZNF496Q96IT1 587 aaPredicted RBP27.91■■■□□ 2.06
NEK3-202ENST00000550841 SPON1Q9HCB6 807 aa27.91■■■□□ 2.06
NEK3-202ENST00000550841 LRRC4BQ9NT99 713 aa27.91■■■□□ 2.06
NEK3-202ENST00000550841 NUP188Q5SRE5 1749 aa27.9■■■□□ 2.06
NEK3-202ENST00000550841 PAPPAQ13219 1627 aa27.9■■■□□ 2.06
NEK3-202ENST00000550841 HNRNPUQ00839 825 aaKnown RBP eCLIP27.89■■■□□ 2.06
NEK3-202ENST00000550841 PPP1R1BQ9UD71 204 aaPredicted RBP27.89■■■□□ 2.06
NEK3-202ENST00000550841 HEG1Q9ULI3 1381 aa27.88■■■□□ 2.05
NEK3-202ENST00000550841 EIF4A1P60842 406 aaKnown RBP27.88■■■□□ 2.05
NEK3-202ENST00000550841 SNRPA1P09661 255 aaKnown RBP27.87■■■□□ 2.05
NEK3-202ENST00000550841 KCNQ4P56696 695 aa27.87■■■□□ 2.05
NEK3-202ENST00000550841 SLC4A9Q96Q91 983 aa27.87■■■□□ 2.05
NEK3-202ENST00000550841 ZNF831Q5JPB2 1677 aa27.87■■■□□ 2.05
NEK3-202ENST00000550841 ZNF521Q96K83 1311 aa27.87■■■□□ 2.05
NEK3-202ENST00000550841 KCPQ6ZWJ8 1503 aa27.87■■■□□ 2.05
NEK3-202ENST00000550841 MBIPQ9NS73 344 aa27.86■■■□□ 2.05
NEK3-202ENST00000550841 STARD3NLO95772 234 aa27.85■■■□□ 2.05
NEK3-202ENST00000550841 GOLGA2Q08379 1002 aa27.85■■■□□ 2.05
NEK3-202ENST00000550841 ITPK1Q13572 414 aa27.85■■■□□ 2.05
NEK3-202ENST00000550841 STK32BQ9NY57 414 aa27.85■■■□□ 2.05
NEK3-202ENST00000550841 UBR2Q8IWV8 1755 aa27.85■■■□□ 2.05
NEK3-202ENST00000550841 KDM3BQ7LBC6 1761 aa27.84■■■□□ 2.05
NEK3-202ENST00000550841 MYH16Q9H6N6 1097 aa27.84■■■□□ 2.05
NEK3-202ENST00000550841 DNAJC10Q8IXB1 793 aa27.83■■■□□ 2.05
NEK3-202ENST00000550841 RC3H1Q5TC82 1133 aaKnown RBP27.82■■■□□ 2.04
NEK3-202ENST00000550841 LINC00116Q8NCU8 138 aa27.82■■■□□ 2.04
NEK3-202ENST00000550841 GIGYF1O75420 1035 aaPredicted RBP27.81■■■□□ 2.04
NEK3-202ENST00000550841 E9PSI1 815 aa27.8■■■□□ 2.04
NEK3-202ENST00000550841 AK7Q96M32 723 aa27.8■■■□□ 2.04
NEK3-202ENST00000550841 DCAF8L1A6NGE4 600 aa27.79■■■□□ 2.04
NEK3-202ENST00000550841 CYP19A1P11511 503 aaPredicted RBP27.79■■■□□ 2.04
NEK3-202ENST00000550841 SLC15A2Q16348 729 aa27.79■■■□□ 2.04
NEK3-202ENST00000550841 AKT1S1Q96B36 256 aa27.79■■■□□ 2.04
NEK3-202ENST00000550841 ANO8Q9HCE9 1232 aaPredicted RBP27.79■■■□□ 2.04
NEK3-202ENST00000550841 CNTNAP4Q9C0A0 1308 aa27.78■■■□□ 2.04
NEK3-202ENST00000550841 CHMP4AQ9BY43 222 aa27.78■■■□□ 2.04
NEK3-202ENST00000550841 TAF1LQ8IZX4 1826 aa27.78■■■□□ 2.04
NEK3-202ENST00000550841 HOXB7P09629 217 aa27.77■■■□□ 2.04
NEK3-202ENST00000550841 TSR2Q969E8 191 aaKnown RBP27.77■■■□□ 2.04
NEK3-202ENST00000550841 TFCP2L1Q9NZI6 479 aa27.77■■■□□ 2.04
NEK3-202ENST00000550841 USP16Q9Y5T5 823 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms