RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 LMOD3Q0VAK6 560 aa6.59□□□□□ -1.35
SCAF11-212ENST00000549162 PELP1Q8IZL8 1130 aaKnown RBP6.59□□□□□ -1.35
SCAF11-212ENST00000549162 MYH14Q7Z406 1995 aaKnown RBP6.59□□□□□ -1.35
SCAF11-212ENST00000549162 HOXC9P31274 260 aa6.58□□□□□ -1.36
SCAF11-212ENST00000549162 COL2A1P02458 1487 aaPredicted RBP6.58□□□□□ -1.36
SCAF11-212ENST00000549162 SLFN5Q08AF3 891 aa6.58□□□□□ -1.36
SCAF11-212ENST00000549162 VPS72Q15906 364 aa6.58□□□□□ -1.36
SCAF11-212ENST00000549162 SPATA31A5Q5VU36 1347 aa6.58□□□□□ -1.36
SCAF11-212ENST00000549162 SPATA31A7Q8IWB4 1347 aa6.58□□□□□ -1.36
SCAF11-212ENST00000549162 BCL11BQ9C0K0 894 aaPredicted RBP6.57□□□□□ -1.36
SCAF11-212ENST00000549162 ABCC4O15439 1325 aa6.57□□□□□ -1.36
SCAF11-212ENST00000549162 AKAP11Q9UKA4 1901 aa6.57□□□□□ -1.36
SCAF11-212ENST00000549162 ZBTB47Q9UFB7 747 aaPredicted RBP6.57□□□□□ -1.36
SCAF11-212ENST00000549162 USP42Q9H9J4 1324 aaKnown RBP6.57□□□□□ -1.36
SCAF11-212ENST00000549162 RGL3Q3MIN7 710 aa6.57□□□□□ -1.36
SCAF11-212ENST00000549162 STK24Q9Y6E0 443 aa6.57□□□□□ -1.36
SCAF11-212ENST00000549162 CHL1O00533 1208 aa6.56□□□□□ -1.36
SCAF11-212ENST00000549162 AK7Q96M32 723 aa6.56□□□□□ -1.36
SCAF11-212ENST00000549162 TESPA1A2RU30 521 aaPredicted RBP6.56□□□□□ -1.36
SCAF11-212ENST00000549162 ERVV-2B6SEH9 535 aa6.56□□□□□ -1.36
SCAF11-212ENST00000549162 TRIM35Q9UPQ4 493 aa6.56□□□□□ -1.36
SCAF11-212ENST00000549162 KCTD17Q8N5Z5 321 aa6.55□□□□□ -1.36
SCAF11-212ENST00000549162 SPINK5Q9NQ38 1064 aaPredicted RBP6.55□□□□□ -1.36
SCAF11-212ENST00000549162 RYDENQ9NUL5 291 aaKnown RBP6.55□□□□□ -1.36
SCAF11-212ENST00000549162 CCDC88AQ3V6T2 1871 aa6.55□□□□□ -1.36
SCAF11-212ENST00000549162 CHD4Q14839 1912 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 PTPRCP08575 1304 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 SPATA31A1Q5TZJ5 1347 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 NT5C2P49902 561 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 PDE3AQ14432 1141 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 NFE2L2Q16236 605 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 CCDC82Q8N4S0 544 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 E9PSI1 815 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 KDM4CQ9H3R0 1056 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 SNRKQ9NRH2 765 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 PDS5AQ29RF7 1337 aaKnown RBP6.54□□□□□ -1.36
SCAF11-212ENST00000549162 PARP14Q460N5 1801 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.54□□□□□ -1.36
SCAF11-212ENST00000549162 GSE1Q14687 1217 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 DUSP27Q5VZP5 1158 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 ZFP91Q96JP5 570 aaPredicted RBP6.54□□□□□ -1.36
SCAF11-212ENST00000549162 SLAIN2Q9P270 581 aa6.54□□□□□ -1.36
SCAF11-212ENST00000549162 ARHGEF1Q92888 912 aaKnown RBP6.53□□□□□ -1.36
SCAF11-212ENST00000549162 MTX1Q13505 466 aa6.53□□□□□ -1.36
SCAF11-212ENST00000549162 DIEXFQ68CQ4 756 aaKnown RBP6.53□□□□□ -1.36
SCAF11-212ENST00000549162 LRRC59Q96AG4 307 aaKnown RBP6.53□□□□□ -1.36
SCAF11-212ENST00000549162 KNSTRNQ9Y448 316 aa6.53□□□□□ -1.36
SCAF11-212ENST00000549162 HSP90AB1P08238 724 aaKnown RBP6.53□□□□□ -1.36
SCAF11-212ENST00000549162 AKAP4Q5JQC9 854 aa6.53□□□□□ -1.36
SCAF11-212ENST00000549162 WDR90Q96KV7 1748 aa6.53□□□□□ -1.36
SCAF11-212ENST00000549162 AOX1Q06278 1338 aa6.52□□□□□ -1.37
SCAF11-212ENST00000549162 CNTNAP4Q9C0A0 1308 aa6.52□□□□□ -1.37
SCAF11-212ENST00000549162 RC3H1Q5TC82 1133 aaKnown RBP6.52□□□□□ -1.37
SCAF11-212ENST00000549162 CERKQ8TCT0 537 aa6.52□□□□□ -1.37
SCAF11-212ENST00000549162 PLA2G12BQ9BX93 195 aa6.52□□□□□ -1.37
SCAF11-212ENST00000549162 KDM2BQ8NHM5 1336 aa6.52□□□□□ -1.37
SCAF11-212ENST00000549162 ANP32CO43423 234 aa6.52□□□□□ -1.37
SCAF11-212ENST00000549162 CEBPAP49715 358 aaPredicted RBP6.52□□□□□ -1.37
SCAF11-212ENST00000549162 TRIM28Q13263 835 aaKnown RBP6.52□□□□□ -1.37
SCAF11-212ENST00000549162 PLEKHG5O94827 1062 aa6.52□□□□□ -1.37
SCAF11-212ENST00000549162 RAD21O60216 631 aa6.51□□□□□ -1.37
SCAF11-212ENST00000549162 EIF4A2Q14240 407 aaKnown RBP6.51□□□□□ -1.37
SCAF11-212ENST00000549162 GAS2L2Q8NHY3 880 aa6.51□□□□□ -1.37
SCAF11-212ENST00000549162 CABP1Q9NZU7 370 aa6.51□□□□□ -1.37
SCAF11-212ENST00000549162 NUDCQ9Y266 331 aa6.51□□□□□ -1.37
SCAF11-212ENST00000549162 SLX4Q8IY92 1834 aa6.51□□□□□ -1.37
SCAF11-212ENST00000549162 ZNF236Q9UL36 1845 aa6.51□□□□□ -1.37
SCAF11-212ENST00000549162 CFAP53Q96M91 514 aa6.5□□□□□ -1.37
SCAF11-212ENST00000549162 PCDH11XQ9BZA7 1347 aa6.5□□□□□ -1.37
SCAF11-212ENST00000549162 PCDH11YQ9BZA8 1340 aa6.5□□□□□ -1.37
SCAF11-212ENST00000549162 ZNF326Q5BKZ1 582 aaKnown RBP6.5□□□□□ -1.37
SCAF11-212ENST00000549162 COG3Q96JB2 828 aa6.5□□□□□ -1.37
SCAF11-212ENST00000549162 NUBP1P53384 320 aa6.5□□□□□ -1.37
SCAF11-212ENST00000549162 SSUH2Q9Y2M2 353 aa6.5□□□□□ -1.37
SCAF11-212ENST00000549162 ZNF335Q9H4Z2 1342 aaPredicted RBP6.5□□□□□ -1.37
SCAF11-212ENST00000549162 MMP14P50281 582 aa6.49□□□□□ -1.37
SCAF11-212ENST00000549162 SLC12A5Q9H2X9 1139 aa6.49□□□□□ -1.37
SCAF11-212ENST00000549162 SIPA1L1O43166 1804 aa6.49□□□□□ -1.37
SCAF11-212ENST00000549162 WAPLQ7Z5K2 1190 aa6.49□□□□□ -1.37
SCAF11-212ENST00000549162 INTS3Q68E01 1043 aaKnown RBP6.48□□□□□ -1.37
SCAF11-212ENST00000549162 ATG3Q9NT62 314 aa6.48□□□□□ -1.37
SCAF11-212ENST00000549162 TRAK1Q9UPV9 953 aa6.48□□□□□ -1.37
SCAF11-212ENST00000549162 CACNA1SQ13698 1873 aa6.48□□□□□ -1.37
SCAF11-212ENST00000549162 KLRG2A4D1S0 409 aaPredicted RBP6.48□□□□□ -1.37
SCAF11-212ENST00000549162 TMEM132EQ6IEE7 984 aa6.48□□□□□ -1.37
SCAF11-212ENST00000549162 KRT28Q7Z3Y7 464 aa6.48□□□□□ -1.37
SCAF11-212ENST00000549162 CDHR2Q9BYE9 1310 aa6.48□□□□□ -1.37
SCAF11-212ENST00000549162 SBF1O95248 1867 aa6.48□□□□□ -1.37
SCAF11-212ENST00000549162 DIAPH1O60610 1272 aaKnown RBP6.48□□□□□ -1.37
SCAF11-212ENST00000549162 MS4A1P11836 297 aa6.47□□□□□ -1.37
SCAF11-212ENST00000549162 MTMR7Q9Y216 660 aa6.47□□□□□ -1.37
SCAF11-212ENST00000549162 GCP02774 474 aa6.47□□□□□ -1.37
SCAF11-212ENST00000549162 CCDC184Q52MB2 194 aa6.47□□□□□ -1.37
SCAF11-212ENST00000549162 DCAF8Q5TAQ9 597 aa6.47□□□□□ -1.37
SCAF11-212ENST00000549162 WWC1Q8IX03 1113 aa6.47□□□□□ -1.37
SCAF11-212ENST00000549162 PHIPQ8WWQ0 1821 aa6.47□□□□□ -1.37
SCAF11-212ENST00000549162 SALL3Q9BXA9 1300 aa6.47□□□□□ -1.37
SCAF11-212ENST00000549162 TMPOP42166 694 aaKnown RBP6.46□□□□□ -1.37
SCAF11-212ENST00000549162 C15orf52Q6ZUT6 534 aaKnown RBP6.46□□□□□ -1.37
SCAF11-212ENST00000549162 SGIP1Q9BQI5 828 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms