RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 MTHFSP49914 203 aa18.19■□□□□ 0.5
CPSF6-204ENST00000547486 SLC4A9Q96Q91 983 aa18.19■□□□□ 0.5
CPSF6-204ENST00000547486 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.18■□□□□ 0.5
CPSF6-204ENST00000547486 GPR162Q16538 588 aa18.18■□□□□ 0.5
CPSF6-204ENST00000547486 CC2D1BQ5T0F9 858 aaKnown RBP18.18■□□□□ 0.5
CPSF6-204ENST00000547486 HSP90AB1P08238 724 aaKnown RBP18.17■□□□□ 0.5
CPSF6-204ENST00000547486 C4BP0C0L5 1744 aa18.17■□□□□ 0.5
CPSF6-204ENST00000547486 KDM6AO15550 1401 aaPredicted RBP18.16■□□□□ 0.5
CPSF6-204ENST00000547486 TAF1LQ8IZX4 1826 aa18.16■□□□□ 0.5
CPSF6-204ENST00000547486 KDRP35968 1356 aa18.16■□□□□ 0.5
CPSF6-204ENST00000547486 CABP4P57796 275 aa18.15■□□□□ 0.5
CPSF6-204ENST00000547486 RBM42Q9BTD8 480 aaKnown RBP18.15■□□□□ 0.5
CPSF6-204ENST00000547486 GOLGB1Q14789 3259 aaKnown RBP18.15■□□□□ 0.5
CPSF6-204ENST00000547486 GNPATO15228 680 aa18.14■□□□□ 0.49
CPSF6-204ENST00000547486 SSFA2P28290 1259 aa18.14■□□□□ 0.49
CPSF6-204ENST00000547486 CNGB1Q14028 1251 aaPredicted RBP18.14■□□□□ 0.49
CPSF6-204ENST00000547486 C1orf141Q5JVX7 400 aa18.14■□□□□ 0.49
CPSF6-204ENST00000547486 PELP1Q8IZL8 1130 aaKnown RBP18.14■□□□□ 0.49
CPSF6-204ENST00000547486 NFATC2IPQ8NCF5 419 aa18.14■□□□□ 0.49
CPSF6-204ENST00000547486 HMOX1P09601 288 aa18.12■□□□□ 0.49
CPSF6-204ENST00000547486 YBX3P16989 372 aaKnown RBP eCLIP18.12■□□□□ 0.49
CPSF6-204ENST00000547486 ZNF784Q8NCA9 323 aaPredicted RBP18.12■□□□□ 0.49
CPSF6-204ENST00000547486 LGR6Q9HBX8 967 aa18.11■□□□□ 0.49
CPSF6-204ENST00000547486 CD2APQ9Y5K6 639 aa18.11■□□□□ 0.49
CPSF6-204ENST00000547486 DIAPH1O60610 1272 aaKnown RBP18.1■□□□□ 0.49
CPSF6-204ENST00000547486 PTCD1O75127 700 aaKnown RBP18.1■□□□□ 0.49
CPSF6-204ENST00000547486 AKAP4Q5JQC9 854 aa18.09■□□□□ 0.49
CPSF6-204ENST00000547486 UBR3Q6ZT12 1888 aa18.09■□□□□ 0.49
CPSF6-204ENST00000547486 MTHFSDQ2M296 383 aaKnown RBP18.08■□□□□ 0.48
CPSF6-204ENST00000547486 TRAPPC3LQ5T215 181 aa18.08■□□□□ 0.48
CPSF6-204ENST00000547486 RC3H1Q5TC82 1133 aaKnown RBP18.08■□□□□ 0.48
CPSF6-204ENST00000547486 ARHGEF1Q92888 912 aaKnown RBP18.08■□□□□ 0.48
CPSF6-204ENST00000547486 RTCBQ9Y3I0 505 aaKnown RBP18.08■□□□□ 0.48
CPSF6-204ENST00000547486 NPC1L1Q9UHC9 1359 aa18.07■□□□□ 0.48
CPSF6-204ENST00000547486 CNTNAP4Q9C0A0 1308 aa18.06■□□□□ 0.48
CPSF6-204ENST00000547486 RPS6KA4O75676 772 aa18.06■□□□□ 0.48
CPSF6-204ENST00000547486 RNMTO43148 476 aaKnown RBP18.05■□□□□ 0.48
CPSF6-204ENST00000547486 SLC52A2Q9HAB3 445 aa18.05■□□□□ 0.48
CPSF6-204ENST00000547486 GRIN3BO60391 1043 aa18.04■□□□□ 0.48
CPSF6-204ENST00000547486 MMP10P09238 476 aa18.04■□□□□ 0.48
CPSF6-204ENST00000547486 ADRA2BP18089 450 aa18.03■□□□□ 0.48
CPSF6-204ENST00000547486 CRKLP46109 303 aaKnown RBP18.03■□□□□ 0.48
CPSF6-204ENST00000547486 SLC39A6Q13433 755 aa18.03■□□□□ 0.48
CPSF6-204ENST00000547486 U2SURPO15042 1029 aaKnown RBP18.02■□□□□ 0.48
CPSF6-204ENST00000547486 GYS1P13807 737 aa18.02■□□□□ 0.48
CPSF6-204ENST00000547486 INTS5Q6P9B9 1019 aaKnown RBP18.02■□□□□ 0.48
CPSF6-204ENST00000547486 NLGN1Q8N2Q7 840 aa18.02■□□□□ 0.48
CPSF6-204ENST00000547486 WWC3Q9ULE0 1092 aa18.02■□□□□ 0.48
CPSF6-204ENST00000547486 COL3A1P02461 1466 aaPredicted RBP18.01■□□□□ 0.47
CPSF6-204ENST00000547486 RFC4P35249 363 aa18.01■□□□□ 0.47
CPSF6-204ENST00000547486 ZNF831Q5JPB2 1677 aa18.01■□□□□ 0.47
CPSF6-204ENST00000547486 DNAJC10Q8IXB1 793 aa18■□□□□ 0.47
CPSF6-204ENST00000547486 SRP68Q9UHB9 627 aaKnown RBP17.99■□□□□ 0.47
CPSF6-204ENST00000547486 CHD4Q14839 1912 aa17.99■□□□□ 0.47
CPSF6-204ENST00000547486 IL17REQ8NFR9 667 aa17.98■□□□□ 0.47
CPSF6-204ENST00000547486 COL5A3P25940 1745 aaPredicted RBP17.98■□□□□ 0.47
CPSF6-204ENST00000547486 MYH14Q7Z406 1995 aaKnown RBP17.97■□□□□ 0.47
CPSF6-204ENST00000547486 SCN11AQ9UI33 1791 aa17.97■□□□□ 0.47
CPSF6-204ENST00000547486 PHACTR3Q96KR7 559 aa17.97■□□□□ 0.47
CPSF6-204ENST00000547486 MRC1P22897 1456 aa17.96■□□□□ 0.47
CPSF6-204ENST00000547486 CYP19A1P11511 503 aaPredicted RBP17.96■□□□□ 0.47
CPSF6-204ENST00000547486 PPP2R1AP30153 589 aa17.96■□□□□ 0.47
CPSF6-204ENST00000547486 FKBP8Q14318 412 aa17.96■□□□□ 0.47
CPSF6-204ENST00000547486 CCDC87Q9NVE4 849 aa17.96■□□□□ 0.47
CPSF6-204ENST00000547486 A0A0G2JLW4 131 aa17.95■□□□□ 0.46
CPSF6-204ENST00000547486 USP42Q9H9J4 1324 aaKnown RBP17.95■□□□□ 0.46
CPSF6-204ENST00000547486 GNAT3A8MTJ3 354 aa17.94■□□□□ 0.46
CPSF6-204ENST00000547486 RSPH6AQ9H0K4 717 aa17.94■□□□□ 0.46
CPSF6-204ENST00000547486 PARP3Q9Y6F1 533 aa17.94■□□□□ 0.46
CPSF6-204ENST00000547486 TJP1Q07157 1748 aa17.94■□□□□ 0.46
CPSF6-204ENST00000547486 PRKAR2BP31323 418 aa17.93■□□□□ 0.46
CPSF6-204ENST00000547486 TGFB2P61812 414 aa17.93■□□□□ 0.46
CPSF6-204ENST00000547486 GAS2L2Q8NHY3 880 aa17.93■□□□□ 0.46
CPSF6-204ENST00000547486 CFAP53Q96M91 514 aa17.93■□□□□ 0.46
CPSF6-204ENST00000547486 CICQ96RK0 1608 aaPredicted RBP17.93■□□□□ 0.46
CPSF6-204ENST00000547486 SOS1Q07889 1333 aaPredicted RBP17.93■□□□□ 0.46
CPSF6-204ENST00000547486 ADAMTS7Q9UKP4 1686 aa17.93■□□□□ 0.46
CPSF6-204ENST00000547486 KCPQ6ZWJ8 1503 aa17.93■□□□□ 0.46
CPSF6-204ENST00000547486 DPEP1P16444 411 aa17.92■□□□□ 0.46
CPSF6-204ENST00000547486 TM4SF1P30408 202 aa17.92■□□□□ 0.46
CPSF6-204ENST00000547486 DDR1Q08345 913 aa17.92■□□□□ 0.46
CPSF6-204ENST00000547486 USPL1Q5W0Q7 1092 aa17.92■□□□□ 0.46
CPSF6-204ENST00000547486 VSIG10Q8N0Z9 540 aa17.92■□□□□ 0.46
CPSF6-204ENST00000547486 ZBTB1Q9Y2K1 713 aa17.92■□□□□ 0.46
CPSF6-204ENST00000547486 PXDNLA1KZ92 1463 aa17.92■□□□□ 0.46
CPSF6-204ENST00000547486 C10orf71Q711Q0 1435 aa17.91■□□□□ 0.46
CPSF6-204ENST00000547486 C1QTNF8P60827 252 aa17.91■□□□□ 0.46
CPSF6-204ENST00000547486 KCNA3P22001 575 aa17.9■□□□□ 0.46
CPSF6-204ENST00000547486 TEFQ10587 303 aa17.9■□□□□ 0.46
CPSF6-204ENST00000547486 ZNF496Q96IT1 587 aaPredicted RBP17.9■□□□□ 0.46
CPSF6-204ENST00000547486 POLRMTO00411 1230 aaKnown RBP17.89■□□□□ 0.45
CPSF6-204ENST00000547486 ZPR1O75312 459 aa17.89■□□□□ 0.45
CPSF6-204ENST00000547486 U2AF1L5P0DN76 240 aaPredicted RBP17.89■□□□□ 0.45
CPSF6-204ENST00000547486 CANXP27824 592 aaKnown RBP17.89■□□□□ 0.45
CPSF6-204ENST00000547486 U2AF1Q01081 240 aaKnown RBP eCLIP17.89■□□□□ 0.45
CPSF6-204ENST00000547486 ZNF790Q6PG37 636 aa17.89■□□□□ 0.45
CPSF6-204ENST00000547486 TTC5Q8N0Z6 440 aa17.89■□□□□ 0.45
CPSF6-204ENST00000547486 NUDCQ9Y266 331 aa17.89■□□□□ 0.45
CPSF6-204ENST00000547486 BCS1LQ9Y276 419 aa17.89■□□□□ 0.45
CPSF6-204ENST00000547486 C4AP0C0L4 1744 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms