RNA–Protein interactions for RNA: ENST00000542337.5

DDB1-220, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-220ENST00000542337 PHF14O94880 888 aa27.34■■□□□ 1.97
DDB1-220ENST00000542337 LINC00116Q8NCU8 138 aa27.34■■□□□ 1.97
DDB1-220ENST00000542337 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.33■■□□□ 1.97
DDB1-220ENST00000542337 SSFA2P28290 1259 aa27.33■■□□□ 1.97
DDB1-220ENST00000542337 RBM42Q9BTD8 480 aaKnown RBP27.33■■□□□ 1.97
DDB1-220ENST00000542337 TUBGCP6Q96RT7 1819 aa27.32■■□□□ 1.96
DDB1-220ENST00000542337 C4BP0C0L5 1744 aa27.31■■□□□ 1.96
DDB1-220ENST00000542337 GNPATO15228 680 aa27.31■■□□□ 1.96
DDB1-220ENST00000542337 HMOX1P09601 288 aa27.31■■□□□ 1.96
DDB1-220ENST00000542337 ITPK1Q13572 414 aa27.31■■□□□ 1.96
DDB1-220ENST00000542337 GPR162Q16538 588 aa27.31■■□□□ 1.96
DDB1-220ENST00000542337 AKAP4Q5JQC9 854 aa27.3■■□□□ 1.96
DDB1-220ENST00000542337 NFATC2IPQ8NCF5 419 aa27.29■■□□□ 1.96
DDB1-220ENST00000542337 KDM6AO15550 1401 aaPredicted RBP27.29■■□□□ 1.96
DDB1-220ENST00000542337 TAF1LQ8IZX4 1826 aa27.27■■□□□ 1.96
DDB1-220ENST00000542337 PELP1Q8IZL8 1130 aaKnown RBP27.26■■□□□ 1.95
DDB1-220ENST00000542337 RTCBQ9Y3I0 505 aaKnown RBP27.26■■□□□ 1.95
DDB1-220ENST00000542337 AMIGO3Q86WK7 504 aa27.25■■□□□ 1.95
DDB1-220ENST00000542337 COL24A1Q17RW2 1714 aa27.24■■□□□ 1.95
DDB1-220ENST00000542337 U2SURPO15042 1029 aaKnown RBP27.24■■□□□ 1.95
DDB1-220ENST00000542337 TRAPPC3LQ5T215 181 aa27.24■■□□□ 1.95
DDB1-220ENST00000542337 RC3H1Q5TC82 1133 aaKnown RBP27.24■■□□□ 1.95
DDB1-220ENST00000542337 CFAP53Q96M91 514 aa27.24■■□□□ 1.95
DDB1-220ENST00000542337 PTCD1O75127 700 aaKnown RBP27.23■■□□□ 1.95
DDB1-220ENST00000542337 SMIM5Q71RC9 77 aa27.23■■□□□ 1.95
DDB1-220ENST00000542337 NLGN2Q8NFZ4 835 aa27.23■■□□□ 1.95
DDB1-220ENST00000542337 CD2APQ9Y5K6 639 aa27.23■■□□□ 1.95
DDB1-220ENST00000542337 SLC4A9Q96Q91 983 aa27.22■■□□□ 1.95
DDB1-220ENST00000542337 ADRA2BP18089 450 aa27.2■■□□□ 1.94
DDB1-220ENST00000542337 MTHFSDQ2M296 383 aaKnown RBP27.2■■□□□ 1.94
DDB1-220ENST00000542337 SLC52A2Q9HAB3 445 aa27.2■■□□□ 1.94
DDB1-220ENST00000542337 CNTNAP4Q9C0A0 1308 aa27.19■■□□□ 1.94
DDB1-220ENST00000542337 RNMTO43148 476 aaKnown RBP27.19■■□□□ 1.94
DDB1-220ENST00000542337 LGR6Q9HBX8 967 aa27.18■■□□□ 1.94
DDB1-220ENST00000542337 RPS6KA4O75676 772 aa27.17■■□□□ 1.94
DDB1-220ENST00000542337 RFC4P35249 363 aa27.17■■□□□ 1.94
DDB1-220ENST00000542337 NUDCQ9Y266 331 aa27.17■■□□□ 1.94
DDB1-220ENST00000542337 UBR3Q6ZT12 1888 aa27.17■■□□□ 1.94
DDB1-220ENST00000542337 GRIN3BO60391 1043 aa27.16■■□□□ 1.94
DDB1-220ENST00000542337 NLGN1Q8N2Q7 840 aa27.15■■□□□ 1.94
DDB1-220ENST00000542337 GAS2L2Q8NHY3 880 aa27.15■■□□□ 1.94
DDB1-220ENST00000542337 ARHGEF1Q92888 912 aaKnown RBP27.14■■□□□ 1.94
DDB1-220ENST00000542337 ZNF831Q5JPB2 1677 aa27.13■■□□□ 1.93
DDB1-220ENST00000542337 MMP10P09238 476 aa27.12■■□□□ 1.93
DDB1-220ENST00000542337 CRKLP46109 303 aaKnown RBP27.12■■□□□ 1.93
DDB1-220ENST00000542337 COL3A1P02461 1466 aaPredicted RBP27.12■■□□□ 1.93
DDB1-220ENST00000542337 GNAT3A8MTJ3 354 aa27.1■■□□□ 1.93
DDB1-220ENST00000542337 PPP2R1AP30153 589 aa27.1■■□□□ 1.93
DDB1-220ENST00000542337 SCN11AQ9UI33 1791 aa27.08■■□□□ 1.93
DDB1-220ENST00000542337 TEFQ10587 303 aa27.08■■□□□ 1.93
DDB1-220ENST00000542337 SLC39A6Q13433 755 aa27.08■■□□□ 1.93
DDB1-220ENST00000542337 TTC5Q8N0Z6 440 aa27.08■■□□□ 1.93
DDB1-220ENST00000542337 UTRNP46939 3433 aa27.07■■□□□ 1.92
DDB1-220ENST00000542337 YBX3P16989 372 aaKnown RBP eCLIP27.07■■□□□ 1.922e-11■■□□□ 12.5
DDB1-220ENST00000542337 DNAJC10Q8IXB1 793 aa27.07■■□□□ 1.92
DDB1-220ENST00000542337 ZNF784Q8NCA9 323 aaPredicted RBP27.07■■□□□ 1.92
DDB1-220ENST00000542337 U2AF1L5P0DN76 240 aaPredicted RBP27.06■■□□□ 1.92
DDB1-220ENST00000542337 U2AF1Q01081 240 aaKnown RBP eCLIP27.06■■□□□ 1.923e-7■□□□□ 8
DDB1-220ENST00000542337 GYS1P13807 737 aa27.05■■□□□ 1.92
DDB1-220ENST00000542337 PRKAR2BP31323 418 aa27.05■■□□□ 1.92
DDB1-220ENST00000542337 CCDC87Q9NVE4 849 aa27.05■■□□□ 1.92
DDB1-220ENST00000542337 PARP3Q9Y6F1 533 aa27.05■■□□□ 1.92
DDB1-220ENST00000542337 INTS5Q6P9B9 1019 aaKnown RBP27.04■■□□□ 1.92
DDB1-220ENST00000542337 VSIG10Q8N0Z9 540 aa27.04■■□□□ 1.92
DDB1-220ENST00000542337 MRC1P22897 1456 aa27.04■■□□□ 1.92
DDB1-220ENST00000542337 RSPH6AQ9H0K4 717 aa27.03■■□□□ 1.92
DDB1-220ENST00000542337 COL5A3P25940 1745 aaPredicted RBP27.02■■□□□ 1.92
DDB1-220ENST00000542337 ZPR1O75312 459 aa27.02■■□□□ 1.92
DDB1-220ENST00000542337 IL17REQ8NFR9 667 aa27.02■■□□□ 1.92
DDB1-220ENST00000542337 FCHSD2O94868 740 aa27.01■■□□□ 1.91
DDB1-220ENST00000542337 CYP19A1P11511 503 aaPredicted RBP27.01■■□□□ 1.91
DDB1-220ENST00000542337 CHD4Q14839 1912 aa27■■□□□ 1.91
DDB1-220ENST00000542337 STARD3NLO95772 234 aa27■■□□□ 1.91
DDB1-220ENST00000542337 TGFB2P61812 414 aa27■■□□□ 1.91
DDB1-220ENST00000542337 PHACTR3Q96KR7 559 aa27■■□□□ 1.91
DDB1-220ENST00000542337 USP42Q9H9J4 1324 aaKnown RBP26.99■■□□□ 1.91
DDB1-220ENST00000542337 SRP68Q9UHB9 627 aaKnown RBP26.99■■□□□ 1.91
DDB1-220ENST00000542337 RTF1Q92541 710 aaKnown RBP26.98■■□□□ 1.91
DDB1-220ENST00000542337 TEX13AQ9BXU3 409 aaPredicted RBP26.98■■□□□ 1.91
DDB1-220ENST00000542337 NEFMP07197 916 aa26.97■■□□□ 1.91
DDB1-220ENST00000542337 ZNF790Q6PG37 636 aa26.97■■□□□ 1.91
DDB1-220ENST00000542337 GOLGB1Q14789 3259 aaKnown RBP26.96■■□□□ 1.91
DDB1-220ENST00000542337 SOS1Q07889 1333 aaPredicted RBP26.96■■□□□ 1.91
DDB1-220ENST00000542337 FKBP8Q14318 412 aa26.96■■□□□ 1.91
DDB1-220ENST00000542337 WWC3Q9ULE0 1092 aa26.96■■□□□ 1.91
DDB1-220ENST00000542337 MYH14Q7Z406 1995 aaKnown RBP26.95■■□□□ 1.91
DDB1-220ENST00000542337 KCPQ6ZWJ8 1503 aa26.95■■□□□ 1.9
DDB1-220ENST00000542337 ADAMTS7Q9UKP4 1686 aa26.95■■□□□ 1.9
DDB1-220ENST00000542337 TJP1Q07157 1748 aa26.94■■□□□ 1.9
DDB1-220ENST00000542337 CICQ96RK0 1608 aaPredicted RBP26.94■■□□□ 1.9
DDB1-220ENST00000542337 BTBD11A6QL63 1104 aa26.93■■□□□ 1.9
DDB1-220ENST00000542337 USPL1Q5W0Q7 1092 aa26.93■■□□□ 1.9
DDB1-220ENST00000542337 ZNF496Q96IT1 587 aaPredicted RBP26.93■■□□□ 1.9
DDB1-220ENST00000542337 FMNL2Q96PY5 1086 aa26.93■■□□□ 1.9
DDB1-220ENST00000542337 ZBTB1Q9Y2K1 713 aa26.93■■□□□ 1.9
DDB1-220ENST00000542337 A0A0G2JLW4 131 aa26.92■■□□□ 1.9
DDB1-220ENST00000542337 CANXP27824 592 aaKnown RBP26.92■■□□□ 1.9
DDB1-220ENST00000542337 NARFQ9UHQ1 456 aa26.92■■□□□ 1.9
DDB1-220ENST00000542337 CEMIPQ8WUJ3 1361 aa26.92■■□□□ 1.9
DDB1-220ENST00000542337 A0A087WZG4 1122 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms