RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 WWC3Q9ULE0 1092 aa21.24■□□□□ 0.99
RTN3-211ENST00000542238 HSP90AB1P08238 724 aaKnown RBP21.23■□□□□ 0.99
RTN3-211ENST00000542238 ADCY9O60503 1353 aa21.23■□□□□ 0.99
RTN3-211ENST00000542238 ERVV-2B6SEH9 535 aa21.22■□□□□ 0.99
RTN3-211ENST00000542238 TRAPPC3LQ5T215 181 aa21.22■□□□□ 0.99
RTN3-211ENST00000542238 ZNF526Q8TF50 670 aaPredicted RBP21.22■□□□□ 0.99
RTN3-211ENST00000542238 RTCBQ9Y3I0 505 aaKnown RBP21.22■□□□□ 0.99
RTN3-211ENST00000542238 MMP10P09238 476 aa21.21■□□□□ 0.99
RTN3-211ENST00000542238 RBM42Q9BTD8 480 aaKnown RBP21.21■□□□□ 0.99
RTN3-211ENST00000542238 PLEKHO1Q53GL0 409 aaPredicted RBP21.2■□□□□ 0.98
RTN3-211ENST00000542238 DCAF5Q96JK2 942 aa21.2■□□□□ 0.98
RTN3-211ENST00000542238 ZNF831Q5JPB2 1677 aa21.2■□□□□ 0.98
RTN3-211ENST00000542238 CLSPNQ9HAW4 1339 aa21.2■□□□□ 0.98
RTN3-211ENST00000542238 NLGN1Q8N2Q7 840 aa21.19■□□□□ 0.98
RTN3-211ENST00000542238 KIF13BQ9NQT8 1826 aa21.18■□□□□ 0.98
RTN3-211ENST00000542238 KDRP35968 1356 aa21.18■□□□□ 0.98
RTN3-211ENST00000542238 ADRA2BP18089 450 aa21.17■□□□□ 0.98
RTN3-211ENST00000542238 AMOTQ4VCS5 1084 aa21.17■□□□□ 0.98
RTN3-211ENST00000542238 RC3H1Q5TC82 1133 aaKnown RBP21.17■□□□□ 0.98
RTN3-211ENST00000542238 COL5A3P25940 1745 aaPredicted RBP21.16■□□□□ 0.98
RTN3-211ENST00000542238 CABP4P57796 275 aa21.16■□□□□ 0.98
RTN3-211ENST00000542238 TGFB2P61812 414 aa21.16■□□□□ 0.98
RTN3-211ENST00000542238 EIF4G2P78344 907 aaKnown RBP eCLIP21.16■□□□□ 0.98
RTN3-211ENST00000542238 ZNF530Q6P9A1 599 aaPredicted RBP21.16■□□□□ 0.98
RTN3-211ENST00000542238 PANK3Q9H999 370 aa21.16■□□□□ 0.98
RTN3-211ENST00000542238 CEP350Q5VT06 3117 aa21.16■□□□□ 0.98
RTN3-211ENST00000542238 N4BP2Q86UW6 1770 aaPredicted RBP21.15■□□□□ 0.98
RTN3-211ENST00000542238 CICQ96RK0 1608 aaPredicted RBP21.15■□□□□ 0.98
RTN3-211ENST00000542238 RFC4P35249 363 aa21.15■□□□□ 0.98
RTN3-211ENST00000542238 PCGF6Q9BYE7 350 aa21.15■□□□□ 0.98
RTN3-211ENST00000542238 CNTNAP4Q9C0A0 1308 aa21.14■□□□□ 0.97
RTN3-211ENST00000542238 C1orf141Q5JVX7 400 aa21.14■□□□□ 0.97
RTN3-211ENST00000542238 ARHGEF1Q92888 912 aaKnown RBP21.14■□□□□ 0.97
RTN3-211ENST00000542238 SLC4A9Q96Q91 983 aa21.14■□□□□ 0.97
RTN3-211ENST00000542238 PXDNLA1KZ92 1463 aa21.13■□□□□ 0.97
RTN3-211ENST00000542238 RPS6KA4O75676 772 aa21.13■□□□□ 0.97
RTN3-211ENST00000542238 HSPA6P17066 643 aa21.13■□□□□ 0.97
RTN3-211ENST00000542238 MTHFSP49914 203 aa21.13■□□□□ 0.97
RTN3-211ENST00000542238 MORC1Q86VD1 984 aa21.13■□□□□ 0.97
RTN3-211ENST00000542238 CCDC87Q9NVE4 849 aa21.13■□□□□ 0.97
RTN3-211ENST00000542238 BCS1LQ9Y276 419 aa21.12■□□□□ 0.97
RTN3-211ENST00000542238 PARP3Q9Y6F1 533 aa21.12■□□□□ 0.97
RTN3-211ENST00000542238 C4AP0C0L4 1744 aa21.12■□□□□ 0.97
RTN3-211ENST00000542238 KIAA1551Q9HCM1 1747 aa21.12■□□□□ 0.97
RTN3-211ENST00000542238 KDM6AO15550 1401 aaPredicted RBP21.12■□□□□ 0.97
RTN3-211ENST00000542238 A0A0G2JLW4 131 aa21.11■□□□□ 0.97
RTN3-211ENST00000542238 HSPA5P11021 654 aaKnown RBP21.11■□□□□ 0.97
RTN3-211ENST00000542238 GYS1P13807 737 aa21.11■□□□□ 0.97
RTN3-211ENST00000542238 C10orf71Q711Q0 1435 aa21.11■□□□□ 0.97
RTN3-211ENST00000542238 MYH14Q7Z406 1995 aaKnown RBP21.1■□□□□ 0.97
RTN3-211ENST00000542238 PTCD1O75127 700 aaKnown RBP21.09■□□□□ 0.97
RTN3-211ENST00000542238 ARHGAP27Q6ZUM4 889 aa21.08■□□□□ 0.97
RTN3-211ENST00000542238 AEBP1Q8IUX7 1158 aa21.08■□□□□ 0.97
RTN3-211ENST00000542238 NFATC2IPQ8NCF5 419 aa21.08■□□□□ 0.97
RTN3-211ENST00000542238 KIF3CO14782 793 aa21.07■□□□□ 0.96
RTN3-211ENST00000542238 DPEP1P16444 411 aa21.07■□□□□ 0.96
RTN3-211ENST00000542238 SULT6B1Q6IMI4 303 aa21.07■□□□□ 0.96
RTN3-211ENST00000542238 FCHSD2O94868 740 aa21.06■□□□□ 0.96
RTN3-211ENST00000542238 CRKLP46109 303 aaKnown RBP21.06■□□□□ 0.96
RTN3-211ENST00000542238 IFFO2Q5TF58 517 aa21.06■□□□□ 0.96
RTN3-211ENST00000542238 KNSTRNQ9Y448 316 aa21.06■□□□□ 0.96
RTN3-211ENST00000542238 BRCA1P38398 1863 aaKnown RBP21.06■□□□□ 0.96
RTN3-211ENST00000542238 SCN11AQ9UI33 1791 aa21.05■□□□□ 0.96
RTN3-211ENST00000542238 ARFGEF1Q9Y6D6 1849 aa21.04■□□□□ 0.96
RTN3-211ENST00000542238 TJP1Q07157 1748 aa21.03■□□□□ 0.96
RTN3-211ENST00000542238 PIM2Q9P1W9 311 aa21.02■□□□□ 0.96
RTN3-211ENST00000542238 USP42Q9H9J4 1324 aaKnown RBP21.02■□□□□ 0.95
RTN3-211ENST00000542238 IL13P35225 146 aa21.01■□□□□ 0.95
RTN3-211ENST00000542238 AKAP4Q5JQC9 854 aa21.01■□□□□ 0.95
RTN3-211ENST00000542238 SRP68Q9UHB9 627 aaKnown RBP21.01■□□□□ 0.95
RTN3-211ENST00000542238 TOMM70O94826 608 aa21■□□□□ 0.95
RTN3-211ENST00000542238 FKBP8Q14318 412 aa21■□□□□ 0.95
RTN3-211ENST00000542238 KCNA3P22001 575 aa20.99■□□□□ 0.95
RTN3-211ENST00000542238 APLP1P51693 650 aa20.99■□□□□ 0.95
RTN3-211ENST00000542238 DALRD3Q5D0E6 543 aaKnown RBP20.99■□□□□ 0.95
RTN3-211ENST00000542238 ZPR1O75312 459 aa20.98■□□□□ 0.95
RTN3-211ENST00000542238 VIRMAQ69YN4 1812 aaKnown RBP20.98■□□□□ 0.95
RTN3-211ENST00000542238 DDR1Q08345 913 aa20.97■□□□□ 0.95
RTN3-211ENST00000542238 C9orf131Q5VYM1 1079 aa20.97■□□□□ 0.95
RTN3-211ENST00000542238 INTS5Q6P9B9 1019 aaKnown RBP20.97■□□□□ 0.95
RTN3-211ENST00000542238 SLC52A2Q9HAB3 445 aa20.97■□□□□ 0.95
RTN3-211ENST00000542238 DNAJC10Q8IXB1 793 aa20.96■□□□□ 0.95
RTN3-211ENST00000542238 NMRK2Q9NPI5 230 aa20.96■□□□□ 0.95
RTN3-211ENST00000542238 C16orf71Q8IYS4 520 aaPredicted RBP20.95■□□□□ 0.94
RTN3-211ENST00000542238 LGR6Q9HBX8 967 aa20.95■□□□□ 0.94
RTN3-211ENST00000542238 ADAMTS7Q9UKP4 1686 aa20.94■□□□□ 0.94
RTN3-211ENST00000542238 POLRMTO00411 1230 aaKnown RBP20.94■□□□□ 0.94
RTN3-211ENST00000542238 TM4SF1P30408 202 aa20.94■□□□□ 0.94
RTN3-211ENST00000542238 AMER1Q5JTC6 1135 aaPredicted RBP20.94■□□□□ 0.94
RTN3-211ENST00000542238 USPL1Q5W0Q7 1092 aa20.94■□□□□ 0.94
RTN3-211ENST00000542238 CCER1Q8TC90 406 aaPredicted RBP20.94■□□□□ 0.94
RTN3-211ENST00000542238 RNMTO43148 476 aaKnown RBP20.93■□□□□ 0.94
RTN3-211ENST00000542238 CHRNA5P30532 468 aa20.93■□□□□ 0.94
RTN3-211ENST00000542238 KDM2BQ8NHM5 1336 aa20.93■□□□□ 0.94
RTN3-211ENST00000542238 HMOX1P09601 288 aa20.92■□□□□ 0.94
RTN3-211ENST00000542238 CYP19A1P11511 503 aaPredicted RBP20.92■□□□□ 0.94
RTN3-211ENST00000542238 RNF181Q9P0P0 153 aa20.92■□□□□ 0.94
RTN3-211ENST00000542238 SOS1Q07889 1333 aaPredicted RBP20.92■□□□□ 0.94
RTN3-211ENST00000542238 MRC1P22897 1456 aa20.92■□□□□ 0.94
RTN3-211ENST00000542238 SBF1O95248 1867 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms