RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 NPC1L1Q9UHC9 1359 aa19.3■□□□□ 0.68
VARS2-212ENST00000542001 KIF1BPQ96EK5 621 aa19.3■□□□□ 0.68
VARS2-212ENST00000542001 MBD3O95983 291 aa19.3■□□□□ 0.68
VARS2-212ENST00000542001 TOM1L2Q6ZVM7 507 aa19.3■□□□□ 0.68
VARS2-212ENST00000542001 MYD88Q99836 296 aa19.3■□□□□ 0.68
VARS2-212ENST00000542001 PDRG1Q9NUG6 133 aa19.3■□□□□ 0.68
VARS2-212ENST00000542001 CABP4P57796 275 aa19.3■□□□□ 0.68
VARS2-212ENST00000542001 MAP3K2Q9Y2U5 619 aa19.3■□□□□ 0.68
VARS2-212ENST00000542001 DCTPP1Q9H773 170 aa19.29■□□□□ 0.68
VARS2-212ENST00000542001 TFIP11Q9UBB9 837 aaKnown RBP19.29■□□□□ 0.68
VARS2-212ENST00000542001 TMX3Q96JJ7 454 aa19.29■□□□□ 0.68
VARS2-212ENST00000542001 NECAB1Q8N987 351 aa19.29■□□□□ 0.68
VARS2-212ENST00000542001 ARHGAP45Q92619 1136 aa19.29■□□□□ 0.68
VARS2-212ENST00000542001 MTMR7Q9Y216 660 aa19.29■□□□□ 0.68
VARS2-212ENST00000542001 ADGBQ8N7X0 1667 aa19.28■□□□□ 0.68
VARS2-212ENST00000542001 MCM2P49736 904 aa19.28■□□□□ 0.68
VARS2-212ENST00000542001 CABLES1Q8TDN4 633 aa19.28■□□□□ 0.68
VARS2-212ENST00000542001 GUCY1B3Q02153 619 aa19.27■□□□□ 0.68
VARS2-212ENST00000542001 CWF19L2Q2TBE0 894 aaKnown RBP19.27■□□□□ 0.68
VARS2-212ENST00000542001 BLOC1S2Q6QNY1 142 aa19.27■□□□□ 0.68
VARS2-212ENST00000542001 PKNOX2Q96KN3 472 aa19.27■□□□□ 0.68
VARS2-212ENST00000542001 WDR33Q9C0J8 1336 aaKnown RBP19.27■□□□□ 0.68
VARS2-212ENST00000542001 CCDC173Q0VFZ6 552 aa19.27■□□□□ 0.67
VARS2-212ENST00000542001 SASS6Q6UVJ0 657 aa19.27■□□□□ 0.67
VARS2-212ENST00000542001 SDF4Q9BRK5 362 aa19.27■□□□□ 0.67
VARS2-212ENST00000542001 TRIM5Q9C035 493 aa19.26■□□□□ 0.67
VARS2-212ENST00000542001 KDM5DQ9BY66 1539 aa19.26■□□□□ 0.67
VARS2-212ENST00000542001 KCNA6P17658 529 aa19.26■□□□□ 0.67
VARS2-212ENST00000542001 NFXL1Q6ZNB6 911 aa19.26■□□□□ 0.67
VARS2-212ENST00000542001 PRDM11Q9NQV5 511 aa19.26■□□□□ 0.67
VARS2-212ENST00000542001 PTPRCP08575 1304 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 RAB11FIP3O75154 756 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 RAB11FIP4Q86YS3 637 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 RHPN1Q8TCX5 695 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 LRRC2Q9BYS8 371 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 KIF3AQ9Y496 699 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 YEATS2Q9ULM3 1422 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 PLEKHF1Q96S99 279 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 RRP12Q5JTH9 1297 aaKnown RBP19.25■□□□□ 0.67
VARS2-212ENST00000542001 ABCC1P33527 1531 aa19.25■□□□□ 0.67
VARS2-212ENST00000542001 PNMA6EA0A0J9YXQ4 647 aa19.24■□□□□ 0.67
VARS2-212ENST00000542001 CD2BP2O95400 341 aaKnown RBP19.24■□□□□ 0.67
VARS2-212ENST00000542001 SNRKQ9NRH2 765 aa19.24■□□□□ 0.67
VARS2-212ENST00000542001 MSH6P52701 1360 aa19.24■□□□□ 0.67
VARS2-212ENST00000542001 RALYLQ86SE5 291 aaKnown RBP19.24■□□□□ 0.67
VARS2-212ENST00000542001 RASSF8Q8NHQ8 419 aa19.24■□□□□ 0.67
VARS2-212ENST00000542001 PES1O00541 588 aaKnown RBP19.23■□□□□ 0.67
VARS2-212ENST00000542001 PSMA5P28066 241 aa19.23■□□□□ 0.67
VARS2-212ENST00000542001 UBE3BQ7Z3V4 1068 aa19.23■□□□□ 0.67
VARS2-212ENST00000542001 ZBTB3Q9H5J0 574 aa19.23■□□□□ 0.67
VARS2-212ENST00000542001 USP25Q9UHP3 1055 aa19.23■□□□□ 0.67
VARS2-212ENST00000542001 GLRX3O76003 335 aaKnown RBP19.23■□□□□ 0.67
VARS2-212ENST00000542001 TRDNQ13061 729 aa19.23■□□□□ 0.67
VARS2-212ENST00000542001 PKP1Q13835 747 aa19.23■□□□□ 0.67
VARS2-212ENST00000542001 CKAP2LQ8IYA6 745 aa19.23■□□□□ 0.67
VARS2-212ENST00000542001 ZNF830Q96NB3 372 aaPredicted RBP19.23■□□□□ 0.67
VARS2-212ENST00000542001 LGR6Q9HBX8 967 aa19.23■□□□□ 0.67
VARS2-212ENST00000542001 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.22■□□□□ 0.67
VARS2-212ENST00000542001 KLHDC4Q8TBB5 520 aa19.22■□□□□ 0.67
VARS2-212ENST00000542001 INSRP06213 1382 aa19.22■□□□□ 0.67
VARS2-212ENST00000542001 CCAR2Q8N163 923 aaKnown RBP19.22■□□□□ 0.67
VARS2-212ENST00000542001 TNRQ92752 1358 aa19.22■□□□□ 0.67
VARS2-212ENST00000542001 CCDC73Q6ZRK6 1079 aa19.22■□□□□ 0.67
VARS2-212ENST00000542001 ARHGEF5Q12774 1597 aa19.21■□□□□ 0.67
VARS2-212ENST00000542001 ESYT1Q9BSJ8 1104 aa19.21■□□□□ 0.67
VARS2-212ENST00000542001 RRAGDQ9NQL2 400 aaPredicted RBP19.21■□□□□ 0.67
VARS2-212ENST00000542001 GSPT1P15170 499 aaKnown RBP19.21■□□□□ 0.67
VARS2-212ENST00000542001 UHRF1BP1LA0JNW5 1464 aa19.21■□□□□ 0.67
VARS2-212ENST00000542001 USP26Q9BXU7 913 aa19.2■□□□□ 0.66
VARS2-212ENST00000542001 DBF4Q9UBU7 674 aaPredicted RBP19.2■□□□□ 0.66
VARS2-212ENST00000542001 CDC42BPAQ5VT25 1732 aa19.2■□□□□ 0.66
VARS2-212ENST00000542001 ERC1Q8IUD2 1116 aa19.2■□□□□ 0.66
VARS2-212ENST00000542001 A0A087WZG4 1122 aa19.2■□□□□ 0.66
VARS2-212ENST00000542001 LTKP29376 864 aa19.19■□□□□ 0.66
VARS2-212ENST00000542001 PRIM1P49642 420 aaKnown RBP19.19■□□□□ 0.66
VARS2-212ENST00000542001 ZSCAN23Q3MJ62 389 aa19.19■□□□□ 0.66
VARS2-212ENST00000542001 CCDC39Q9UFE4 941 aa19.19■□□□□ 0.66
VARS2-212ENST00000542001 NDUFB9Q9Y6M9 179 aa19.19■□□□□ 0.66
VARS2-212ENST00000542001 CCT2P78371 535 aaKnown RBP19.19■□□□□ 0.66
VARS2-212ENST00000542001 ANKRD24Q8TF21 1146 aa19.19■□□□□ 0.66
VARS2-212ENST00000542001 ZMYM3Q14202 1370 aa19.18■□□□□ 0.66
VARS2-212ENST00000542001 ME1P48163 572 aa19.18■□□□□ 0.66
VARS2-212ENST00000542001 DDX46Q7L014 1031 aaKnown RBP19.18■□□□□ 0.66
VARS2-212ENST00000542001 KCNQ3O43525 872 aa19.18■□□□□ 0.66
VARS2-212ENST00000542001 SYNE3Q6ZMZ3 975 aa19.18■□□□□ 0.66
VARS2-212ENST00000542001 CHL1O00533 1208 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 KRT85P78386 507 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 ECHDC1Q9NTX5 307 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 NBPF7P0C2Y1 421 aaPredicted RBP19.17■□□□□ 0.66
VARS2-212ENST00000542001 HCLS1P14317 486 aaPredicted RBP19.17■□□□□ 0.66
VARS2-212ENST00000542001 ATP8B2P98198 1209 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 RAB3GAP1Q15042 981 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 TNMDQ9H2S6 317 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 GIMAP6Q6P9H5 292 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 ZSCAN30Q86W11 494 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 CCDC82Q8N4S0 544 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 CNNM1Q9NRU3 951 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 CNPY2Q9Y2B0 182 aa19.17■□□□□ 0.66
VARS2-212ENST00000542001 COPS6Q7L5N1 327 aa19.16■□□□□ 0.66
VARS2-212ENST00000542001 SPATA32Q96LK8 384 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms