RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 HDAC1Q13547 482 aaPredicted RBP17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 SYCP1Q15431 976 aa17.48■□□□□ 0.39
SMARCA4-207ENST00000541122 KIF4BQ2VIQ3 1234 aa17.48■□□□□ 0.39
SMARCA4-207ENST00000541122 SNW1Q13573 536 aaKnown RBP17.48■□□□□ 0.39
SMARCA4-207ENST00000541122 RPRD2Q5VT52 1461 aaKnown RBP17.48■□□□□ 0.39
SMARCA4-207ENST00000541122 CENPHQ9H3R5 247 aa17.48■□□□□ 0.39
SMARCA4-207ENST00000541122 POLR3GO15318 223 aaPredicted RBP17.47■□□□□ 0.39
SMARCA4-207ENST00000541122 ANKRD18AQ8IVF6 992 aa17.47■□□□□ 0.39
SMARCA4-207ENST00000541122 TAF4BQ92750 862 aa17.47■□□□□ 0.39
SMARCA4-207ENST00000541122 FERMT3Q86UX7 667 aa17.47■□□□□ 0.39
SMARCA4-207ENST00000541122 C8orf34Q49A92 452 aa17.47■□□□□ 0.39
SMARCA4-207ENST00000541122 HMGB1P09429 215 aaKnown RBP17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 NLRP6P59044 892 aa17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 CCDC57Q2TAC2 916 aa17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 ZNF397Q8NF99 534 aaPredicted RBP17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 IL1RAPL2Q9NP60 686 aa17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 STX6O43752 255 aa17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 ZFYVE27Q5T4F4 411 aa17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 RBM33Q96EV2 1170 aaKnown RBP17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 RAD21O60216 631 aa17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 IGHDP01880 384 aa17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 RBM25P49756 843 aaKnown RBP17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 SMAP1Q8IYB5 467 aaPredicted RBP17.46■□□□□ 0.39
SMARCA4-207ENST00000541122 PRAM1Q96QH2 718 aa17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 SPDYE4A6NLX3 237 aa17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 KDM4AO75164 1064 aa17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 EIF5P55010 431 aaKnown RBP17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 CTDP1Q9Y5B0 961 aaPredicted RBP17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 SMARCC1Q92922 1105 aaPredicted RBP17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 PANK2Q9BZ23 570 aa17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 EXOC6BQ9Y2D4 811 aa17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 PTPN23Q9H3S7 1636 aa17.45■□□□□ 0.38
SMARCA4-207ENST00000541122 IVLP07476 585 aa17.44■□□□□ 0.38
SMARCA4-207ENST00000541122 TRIM27P14373 513 aa17.44■□□□□ 0.38
SMARCA4-207ENST00000541122 PRPF40BQ6NWY9 871 aaKnown RBP17.44■□□□□ 0.38
SMARCA4-207ENST00000541122 GRIN2BQ13224 1484 aa17.44■□□□□ 0.38
SMARCA4-207ENST00000541122 EVA1CP58658 441 aa17.44■□□□□ 0.38
SMARCA4-207ENST00000541122 SEPT7Q16181 437 aaKnown RBP17.44■□□□□ 0.38
SMARCA4-207ENST00000541122 ZNF165P49910 485 aa17.44■□□□□ 0.38
SMARCA4-207ENST00000541122 IL16Q14005 1332 aa17.43■□□□□ 0.38
SMARCA4-207ENST00000541122 NEFHP12036 1026 aa17.43■□□□□ 0.38
SMARCA4-207ENST00000541122 ENOX2Q16206 610 aaKnown RBP17.43■□□□□ 0.38
SMARCA4-207ENST00000541122 RBM27Q9P2N5 1060 aaKnown RBP17.43■□□□□ 0.38
SMARCA4-207ENST00000541122 KRT18P05783 430 aaKnown RBP17.43■□□□□ 0.38
SMARCA4-207ENST00000541122 SPA17Q15506 151 aa17.43■□□□□ 0.38
SMARCA4-207ENST00000541122 U3KPZ7 1027 aaPredicted RBP17.43■□□□□ 0.38
SMARCA4-207ENST00000541122 TRMT1Q9NXH9 659 aaKnown RBP17.43■□□□□ 0.38
SMARCA4-207ENST00000541122 PCF11O94913 1555 aaKnown RBP17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 SMC5Q8IY18 1101 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 CDK19Q9BWU1 502 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 TANGO6Q9C0B7 1094 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 CKAP2LQ8IYA6 745 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 MAPK8IP2Q13387 824 aaPredicted RBP17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 TTC22Q5TAA0 569 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 FEZ1Q99689 392 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 LAMC3Q9Y6N6 1575 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 TERF1P54274 439 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 NUCB1Q02818 461 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 SLC26A8Q96RN1 970 aa17.42■□□□□ 0.38
SMARCA4-207ENST00000541122 RAB3GAP1Q15042 981 aa17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 NUTM1Q86Y26 1132 aa17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 SRRTQ9BXP5 876 aaKnown RBP17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 FYB1O15117 783 aa17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 TAX1BP1Q86VP1 789 aa17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 CABP1Q9NZU7 370 aa17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 PTPRCP08575 1304 aa17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 NSD2O96028 1365 aa17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 NESP48681 1621 aa17.41■□□□□ 0.38
SMARCA4-207ENST00000541122 HCLS1P14317 486 aaPredicted RBP17.4■□□□□ 0.38
SMARCA4-207ENST00000541122 FAM200AQ8TCP9 573 aa17.4■□□□□ 0.38
SMARCA4-207ENST00000541122 LMAN1P49257 510 aa17.4■□□□□ 0.38
SMARCA4-207ENST00000541122 SIL1Q9H173 461 aa17.4■□□□□ 0.38
SMARCA4-207ENST00000541122 TMC6Q7Z403 805 aa17.4■□□□□ 0.38
SMARCA4-207ENST00000541122 SMARCA5O60264 1052 aaPredicted RBP17.4■□□□□ 0.38
SMARCA4-207ENST00000541122 PHAXQ9H814 394 aaKnown RBP17.4■□□□□ 0.38
SMARCA4-207ENST00000541122 ANAPC15P60006 121 aa17.39■□□□□ 0.38
SMARCA4-207ENST00000541122 PAFAH1B1P43034 410 aa17.39■□□□□ 0.37
SMARCA4-207ENST00000541122 GNL3LQ9NVN8 582 aaKnown RBP17.39■□□□□ 0.37
SMARCA4-207ENST00000541122 ZSCAN22P10073 491 aaPredicted RBP17.39■□□□□ 0.37
SMARCA4-207ENST00000541122 GJB2P29033 226 aa17.39■□□□□ 0.37
SMARCA4-207ENST00000541122 FSIP1Q8NA03 581 aa17.39■□□□□ 0.37
SMARCA4-207ENST00000541122 BMP2KQ9NSY1 1161 aaPredicted RBP17.39■□□□□ 0.37
SMARCA4-207ENST00000541122 C8orf76Q96K31 380 aa17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 YEATS4O95619 227 aa17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 KIF6Q6ZMV9 814 aa17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 DYDC1Q8WWB3 177 aa17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 PRG4Q92954 1404 aaPredicted RBP17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 EPRSP07814 1512 aaKnown RBP17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 USO1O60763 962 aaKnown RBP17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 EZRP15311 586 aaKnown RBP17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 TRERF1Q96PN7 1200 aa17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 ARHGAP45Q92619 1136 aa17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 NLRP2Q9NX02 1062 aa17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 RTEL1-TNFRSF6BF6WH68 1400 aa17.38■□□□□ 0.37
SMARCA4-207ENST00000541122 CTR9Q6PD62 1173 aa17.37■□□□□ 0.37
SMARCA4-207ENST00000541122 GDPD2Q9HCC8 539 aa17.37■□□□□ 0.37
SMARCA4-207ENST00000541122 TUBB4BP68371 445 aa17.37■□□□□ 0.37
SMARCA4-207ENST00000541122 FKBP15Q5T1M5 1219 aa17.37■□□□□ 0.37
SMARCA4-207ENST00000541122 TMX3Q96JJ7 454 aa17.37■□□□□ 0.37
SMARCA4-207ENST00000541122 ZSCAN16Q9H4T2 348 aaPredicted RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms