RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SVOPQ8N4V2 548 aa8.1□□□□□ -1.11
VPS13A-213ENST00000539950 GPAMQ9HCL2 828 aa8.1□□□□□ -1.11
VPS13A-213ENST00000539950 POM121CA8CG34 1229 aa8.09□□□□□ -1.11
VPS13A-213ENST00000539950 RAD21O60216 631 aa8.09□□□□□ -1.11
VPS13A-213ENST00000539950 INHAP05111 366 aa8.09□□□□□ -1.11
VPS13A-213ENST00000539950 GDF10P55107 478 aa8.09□□□□□ -1.11
VPS13A-213ENST00000539950 SRSF11Q05519 484 aaKnown RBP8.09□□□□□ -1.11
VPS13A-213ENST00000539950 TLR1Q15399 786 aa8.09□□□□□ -1.11
VPS13A-213ENST00000539950 GNASQ5JWF2 1037 aa8.09□□□□□ -1.11
VPS13A-213ENST00000539950 LOC100996750A0A140TA64 210 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 A0A1B0GTH6 734 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 SKIP12755 728 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 GTF2E1P29083 439 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-213ENST00000539950 FOXR1Q6PIV2 292 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 LYPD4Q6UWN0 246 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 PPARGC1BQ86YN6 1023 aaKnown RBP8.08□□□□□ -1.12
VPS13A-213ENST00000539950 WWC1Q8IX03 1113 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 ADAMTS19Q8TE59 1207 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 KRTAP4-6Q9BYQ5 205 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 NUCKS1Q9H1E3 243 aaKnown RBP8.08□□□□□ -1.12
VPS13A-213ENST00000539950 MBIPQ9NS73 344 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 ADAMTS8Q9UP79 889 aa8.08□□□□□ -1.12
VPS13A-213ENST00000539950 ARHGEF15O94989 841 aa8.07□□□□□ -1.12
VPS13A-213ENST00000539950 RHBDD1Q8TEB9 315 aa8.07□□□□□ -1.12
VPS13A-213ENST00000539950 PCDHGA11Q9Y5H2 935 aa8.07□□□□□ -1.12
VPS13A-213ENST00000539950 TMEM229AB2RXF0 380 aa8.06□□□□□ -1.12
VPS13A-213ENST00000539950 TMEM132AQ24JP5 1023 aa8.06□□□□□ -1.12
VPS13A-213ENST00000539950 RUBCNLQ9H714 662 aa8.06□□□□□ -1.12
VPS13A-213ENST00000539950 SERTAD1Q9UHV2 236 aa8.06□□□□□ -1.12
VPS13A-213ENST00000539950 IGF1RP08069 1367 aa8.06□□□□□ -1.12
VPS13A-213ENST00000539950 MSX1P28360 303 aa8.05□□□□□ -1.12
VPS13A-213ENST00000539950 GSK3AP49840 483 aa8.05□□□□□ -1.12
VPS13A-213ENST00000539950 SMTNP53814 917 aa8.05□□□□□ -1.12
VPS13A-213ENST00000539950 EML3Q32P44 896 aa8.05□□□□□ -1.12
VPS13A-213ENST00000539950 NFATC2IPQ8NCF5 419 aa8.05□□□□□ -1.12
VPS13A-213ENST00000539950 TRERF1Q96PN7 1200 aa8.05□□□□□ -1.12
VPS13A-213ENST00000539950 CELA2BP08218 269 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-213ENST00000539950 PLA2G4AP47712 749 aa8.04□□□□□ -1.12
VPS13A-213ENST00000539950 NCOA4Q13772 614 aa8.04□□□□□ -1.12
VPS13A-213ENST00000539950 UBAP2LQ14157 1087 aaKnown RBP8.04□□□□□ -1.12
VPS13A-213ENST00000539950 DEPDC4Q8N2C3 294 aa8.04□□□□□ -1.12
VPS13A-213ENST00000539950 USP17L5A8MUK1 530 aa8.03□□□□□ -1.12
VPS13A-213ENST00000539950 CLUAP1Q96AJ1 413 aa8.03□□□□□ -1.12
VPS13A-213ENST00000539950 SLC4A9Q96Q91 983 aa8.03□□□□□ -1.12
VPS13A-213ENST00000539950 NOD1Q9Y239 953 aa8.03□□□□□ -1.12
VPS13A-213ENST00000539950 USP3Q9Y6I4 520 aa8.03□□□□□ -1.12
VPS13A-213ENST00000539950 CSB-PGBD3P0DP91 1061 aa8.02□□□□□ -1.13
VPS13A-213ENST00000539950 MX2P20592 715 aa8.02□□□□□ -1.13
VPS13A-213ENST00000539950 GTF2IP78347 998 aa8.02□□□□□ -1.13
VPS13A-213ENST00000539950 KCNMA1Q12791 1236 aa8.02□□□□□ -1.13
VPS13A-213ENST00000539950 HDGFL1Q5TGJ6 251 aa8.02□□□□□ -1.13
VPS13A-213ENST00000539950 ZNF295-AS1Q8N0V1 137 aa8.02□□□□□ -1.13
VPS13A-213ENST00000539950 PGBD3Q8N328 593 aa8.02□□□□□ -1.13
VPS13A-213ENST00000539950 UCN2Q96RP3 112 aa8.02□□□□□ -1.13
VPS13A-213ENST00000539950 IQSEC3Q9UPP2 1182 aaPredicted RBP8.02□□□□□ -1.13
VPS13A-213ENST00000539950 A6NJY4 79 aa8.01□□□□□ -1.13
VPS13A-213ENST00000539950 LZTS3O60299 673 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-213ENST00000539950 ATP4AP20648 1035 aa8.01□□□□□ -1.13
VPS13A-213ENST00000539950 MAP3K10Q02779 954 aa8.01□□□□□ -1.13
VPS13A-213ENST00000539950 MTFR1Q15390 333 aa8.01□□□□□ -1.13
VPS13A-213ENST00000539950 TBC1D9Q6ZT07 1266 aa8.01□□□□□ -1.13
VPS13A-213ENST00000539950 ACDQ96AP0 544 aa8.01□□□□□ -1.13
VPS13A-213ENST00000539950 NIFKQ9BYG3 293 aaKnown RBP8.01□□□□□ -1.13
VPS13A-213ENST00000539950 SERBP1Q8NC51 408 aaKnown RBP eCLIP8□□□□□ -1.13
VPS13A-213ENST00000539950 CFHR5Q9BXR6 569 aa8□□□□□ -1.13
VPS13A-213ENST00000539950 CRISPLD1Q9H336 500 aa8□□□□□ -1.13
VPS13A-213ENST00000539950 CDK2AP1O14519 115 aa7.99□□□□□ -1.13
VPS13A-213ENST00000539950 PSME1Q06323 249 aa7.99□□□□□ -1.13
VPS13A-213ENST00000539950 LBRQ14739 615 aaKnown RBP7.99□□□□□ -1.13
VPS13A-213ENST00000539950 EFHC2Q5JST6 749 aa7.99□□□□□ -1.13
VPS13A-213ENST00000539950 FNBP4Q8N3X1 1017 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-213ENST00000539950 AIDAQ96BJ3 306 aa7.99□□□□□ -1.13
VPS13A-213ENST00000539950 ZNF358Q9NW07 568 aa7.99□□□□□ -1.13
VPS13A-213ENST00000539950 USP17L3A6NCW0 530 aa7.98□□□□□ -1.13
VPS13A-213ENST00000539950 USP17L4A6NCW7 530 aa7.98□□□□□ -1.13
VPS13A-213ENST00000539950 BCRP11274 1271 aa7.98□□□□□ -1.13
VPS13A-213ENST00000539950 MARSP56192 900 aaKnown RBP7.98□□□□□ -1.13
VPS13A-213ENST00000539950 USP17L2Q6R6M4 530 aa7.98□□□□□ -1.13
VPS13A-213ENST00000539950 USP17L1Q7RTZ2 530 aa7.98□□□□□ -1.13
VPS13A-213ENST00000539950 ABHD17AQ96GS6 310 aa7.98□□□□□ -1.13
VPS13A-213ENST00000539950 DNAAF2Q9NVR5 837 aaKnown RBP7.98□□□□□ -1.13
VPS13A-213ENST00000539950 NSFL1CQ9UNZ2 370 aaKnown RBP7.98□□□□□ -1.13
VPS13A-213ENST00000539950 RNF225M0QZC1 329 aaPredicted RBP7.97□□□□□ -1.13
VPS13A-213ENST00000539950 BACH1O14867 736 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 BNIP3LO60238 219 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 RASSF7Q02833 373 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 PROSER2Q86WR7 435 aaPredicted RBP7.97□□□□□ -1.13
VPS13A-213ENST00000539950 PLEKHM2Q8IWE5 1019 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 C1orf216Q8TAB5 229 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 NDFIP2Q9NV92 336 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 CABP1Q9NZU7 370 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 PHF24Q9UPV7 400 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 KIAA1024Q9UPX6 916 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 PARP3Q9Y6F1 533 aa7.97□□□□□ -1.13
VPS13A-213ENST00000539950 ZBTB7BO15156 539 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-213ENST00000539950 ATP9BO43861 1147 aa7.96□□□□□ -1.14
VPS13A-213ENST00000539950 IRS1P35568 1242 aa7.96□□□□□ -1.14
VPS13A-213ENST00000539950 EPHA4P54764 986 aa7.96□□□□□ -1.14
VPS13A-213ENST00000539950 CLDN10P78369 228 aa7.96□□□□□ -1.14
VPS13A-213ENST00000539950 ENAMQ9NRM1 1142 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 1106.3 ms