RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 TAF1LQ8IZX4 1826 aa20.78■□□□□ 0.92
UBE3B-211ENST00000539843 MTHFSP49914 203 aa20.78■□□□□ 0.92
UBE3B-211ENST00000539843 LINC00116Q8NCU8 138 aa20.78■□□□□ 0.92
UBE3B-211ENST00000539843 RBM42Q9BTD8 480 aaKnown RBP20.78■□□□□ 0.92
UBE3B-211ENST00000539843 ATG3Q9NT62 314 aa20.78■□□□□ 0.92
UBE3B-211ENST00000539843 SULT6B1Q6IMI4 303 aa20.77■□□□□ 0.92
UBE3B-211ENST00000539843 CHD4Q14839 1912 aa20.76■□□□□ 0.91
UBE3B-211ENST00000539843 RTCBQ9Y3I0 505 aaKnown RBP20.76■□□□□ 0.91
UBE3B-211ENST00000539843 KIF7Q2M1P5 1343 aa20.76■□□□□ 0.91
UBE3B-211ENST00000539843 ITPK1Q13572 414 aa20.74■□□□□ 0.91
UBE3B-211ENST00000539843 AMER1Q5JTC6 1135 aaPredicted RBP20.73■□□□□ 0.91
UBE3B-211ENST00000539843 TRAPPC3LQ5T215 181 aa20.73■□□□□ 0.91
UBE3B-211ENST00000539843 AEBP1Q8IUX7 1158 aa20.73■□□□□ 0.91
UBE3B-211ENST00000539843 ADRA2BP18089 450 aa20.72■□□□□ 0.91
UBE3B-211ENST00000539843 KDRP35968 1356 aa20.72■□□□□ 0.91
UBE3B-211ENST00000539843 UBR3Q6ZT12 1888 aa20.71■□□□□ 0.91
UBE3B-211ENST00000539843 IL13P35225 146 aa20.71■□□□□ 0.91
UBE3B-211ENST00000539843 RC3H1Q5TC82 1133 aaKnown RBP20.71■□□□□ 0.91
UBE3B-211ENST00000539843 CNTNAP4Q9C0A0 1308 aa20.7■□□□□ 0.9
UBE3B-211ENST00000539843 KDM6AO15550 1401 aaPredicted RBP20.7■□□□□ 0.9
UBE3B-211ENST00000539843 YBX3P16989 372 aaKnown RBP eCLIP20.69■□□□□ 0.9
UBE3B-211ENST00000539843 RFC4P35249 363 aa20.69■□□□□ 0.9
UBE3B-211ENST00000539843 AKAP4Q5JQC9 854 aa20.69■□□□□ 0.9
UBE3B-211ENST00000539843 AMIGO3Q86WK7 504 aa20.69■□□□□ 0.9
UBE3B-211ENST00000539843 NLGN1Q8N2Q7 840 aa20.69■□□□□ 0.9
UBE3B-211ENST00000539843 CC2D1BQ5T0F9 858 aaKnown RBP20.68■□□□□ 0.9
UBE3B-211ENST00000539843 DIAPH1O60610 1272 aaKnown RBP20.67■□□□□ 0.9
UBE3B-211ENST00000539843 PTCD1O75127 700 aaKnown RBP20.67■□□□□ 0.9
UBE3B-211ENST00000539843 GIGYF1O75420 1035 aaPredicted RBP20.67■□□□□ 0.9
UBE3B-211ENST00000539843 SMIM5Q71RC9 77 aa20.67■□□□□ 0.9
UBE3B-211ENST00000539843 NFATC2IPQ8NCF5 419 aa20.67■□□□□ 0.9
UBE3B-211ENST00000539843 MMP10P09238 476 aa20.66■□□□□ 0.9
UBE3B-211ENST00000539843 ZNF831Q5JPB2 1677 aa20.66■□□□□ 0.9
UBE3B-211ENST00000539843 RPS6KA4O75676 772 aa20.65■□□□□ 0.9
UBE3B-211ENST00000539843 CCDC87Q9NVE4 849 aa20.64■□□□□ 0.89
UBE3B-211ENST00000539843 HMOX1P09601 288 aa20.63■□□□□ 0.89
UBE3B-211ENST00000539843 C1QTNF8P60827 252 aa20.63■□□□□ 0.89
UBE3B-211ENST00000539843 ARHGEF1Q92888 912 aaKnown RBP20.63■□□□□ 0.89
UBE3B-211ENST00000539843 SLC4A9Q96Q91 983 aa20.63■□□□□ 0.89
UBE3B-211ENST00000539843 PARP3Q9Y6F1 533 aa20.63■□□□□ 0.89
UBE3B-211ENST00000539843 UTRNP46939 3433 aa20.63■□□□□ 0.89
UBE3B-211ENST00000539843 SLC52A2Q9HAB3 445 aa20.62■□□□□ 0.89
UBE3B-211ENST00000539843 NPC1L1Q9UHC9 1359 aa20.61■□□□□ 0.89
UBE3B-211ENST00000539843 PER1O15534 1290 aaPredicted RBP20.61■□□□□ 0.89
UBE3B-211ENST00000539843 CRKLP46109 303 aaKnown RBP20.61■□□□□ 0.89
UBE3B-211ENST00000539843 TGFB2P61812 414 aa20.61■□□□□ 0.89
UBE3B-211ENST00000539843 CNGB1Q14028 1251 aaPredicted RBP20.6■□□□□ 0.89
UBE3B-211ENST00000539843 SENP3-EIF4A1A0A087X0R7 540 aa20.59■□□□□ 0.89
UBE3B-211ENST00000539843 U2SURPO15042 1029 aaKnown RBP20.59■□□□□ 0.89
UBE3B-211ENST00000539843 CFAP53Q96M91 514 aa20.59■□□□□ 0.89
UBE3B-211ENST00000539843 RNMTO43148 476 aaKnown RBP20.58■□□□□ 0.89
UBE3B-211ENST00000539843 GYS1P13807 737 aa20.58■□□□□ 0.89
UBE3B-211ENST00000539843 WWC3Q9ULE0 1092 aa20.58■□□□□ 0.89
UBE3B-211ENST00000539843 COL5A3P25940 1745 aaPredicted RBP20.58■□□□□ 0.88
UBE3B-211ENST00000539843 CICQ96RK0 1608 aaPredicted RBP20.57■□□□□ 0.88
UBE3B-211ENST00000539843 TTC5Q8N0Z6 440 aa20.57■□□□□ 0.88
UBE3B-211ENST00000539843 GAS2L2Q8NHY3 880 aa20.57■□□□□ 0.88
UBE3B-211ENST00000539843 GPBP1L1Q9HC44 474 aaPredicted RBP20.57■□□□□ 0.88
UBE3B-211ENST00000539843 ATP10DQ9P241 1426 aa20.56■□□□□ 0.88
UBE3B-211ENST00000539843 ZPR1O75312 459 aa20.56■□□□□ 0.88
UBE3B-211ENST00000539843 MTHFSDQ2M296 383 aaKnown RBP20.56■□□□□ 0.88
UBE3B-211ENST00000539843 SCN11AQ9UI33 1791 aa20.55■□□□□ 0.88
UBE3B-211ENST00000539843 LGR6Q9HBX8 967 aa20.55■□□□□ 0.88
UBE3B-211ENST00000539843 MRC1P22897 1456 aa20.55■□□□□ 0.88
UBE3B-211ENST00000539843 USP42Q9H9J4 1324 aaKnown RBP20.54■□□□□ 0.88
UBE3B-211ENST00000539843 C10orf71Q711Q0 1435 aa20.54■□□□□ 0.88
UBE3B-211ENST00000539843 TEFQ10587 303 aa20.54■□□□□ 0.88
UBE3B-211ENST00000539843 BCS1LQ9Y276 419 aa20.54■□□□□ 0.88
UBE3B-211ENST00000539843 DNAJC10Q8IXB1 793 aa20.53■□□□□ 0.88
UBE3B-211ENST00000539843 NUDCQ9Y266 331 aa20.53■□□□□ 0.88
UBE3B-211ENST00000539843 PXDNLA1KZ92 1463 aa20.53■□□□□ 0.88
UBE3B-211ENST00000539843 C4AP0C0L4 1744 aa20.53■□□□□ 0.88
UBE3B-211ENST00000539843 VSIG10Q8N0Z9 540 aa20.52■□□□□ 0.88
UBE3B-211ENST00000539843 A0A0G2JLW4 131 aa20.51■□□□□ 0.87
UBE3B-211ENST00000539843 GNAT3A8MTJ3 354 aa20.51■□□□□ 0.87
UBE3B-211ENST00000539843 SLC39A6Q13433 755 aa20.51■□□□□ 0.87
UBE3B-211ENST00000539843 SRP68Q9UHB9 627 aaKnown RBP20.51■□□□□ 0.87
UBE3B-211ENST00000539843 FCHSD2O94868 740 aa20.5■□□□□ 0.87
UBE3B-211ENST00000539843 STARD3NLO95772 234 aa20.5■□□□□ 0.87
UBE3B-211ENST00000539843 INTS5Q6P9B9 1019 aaKnown RBP20.5■□□□□ 0.87
UBE3B-211ENST00000539843 NPM2Q86SE8 214 aaKnown RBP20.5■□□□□ 0.87
UBE3B-211ENST00000539843 TJP1Q07157 1748 aa20.5■□□□□ 0.87
UBE3B-211ENST00000539843 DPEP1P16444 411 aa20.49■□□□□ 0.87
UBE3B-211ENST00000539843 FKBP8Q14318 412 aa20.49■□□□□ 0.87
UBE3B-211ENST00000539843 ZNF526Q8TF50 670 aaPredicted RBP20.49■□□□□ 0.87
UBE3B-211ENST00000539843 SOS1Q07889 1333 aaPredicted RBP20.49■□□□□ 0.87
UBE3B-211ENST00000539843 ADCY9O60503 1353 aa20.48■□□□□ 0.87
UBE3B-211ENST00000539843 CYP19A1P11511 503 aaPredicted RBP20.48■□□□□ 0.87
UBE3B-211ENST00000539843 TEX13AQ9BXU3 409 aaPredicted RBP20.48■□□□□ 0.87
UBE3B-211ENST00000539843 PIM2Q9P1W9 311 aa20.48■□□□□ 0.87
UBE3B-211ENST00000539843 KIF13BQ9NQT8 1826 aa20.48■□□□□ 0.87
UBE3B-211ENST00000539843 COL15A1P39059 1388 aa20.47■□□□□ 0.87
UBE3B-211ENST00000539843 A0A087WZG4 1122 aa20.47■□□□□ 0.87
UBE3B-211ENST00000539843 USPL1Q5W0Q7 1092 aa20.47■□□□□ 0.87
UBE3B-211ENST00000539843 ARHGAP27Q6ZUM4 889 aa20.47■□□□□ 0.87
UBE3B-211ENST00000539843 COL3A1P02461 1466 aaPredicted RBP20.47■□□□□ 0.87
UBE3B-211ENST00000539843 MYH14Q7Z406 1995 aaKnown RBP20.46■□□□□ 0.87
UBE3B-211ENST00000539843 NARFQ9UHQ1 456 aa20.46■□□□□ 0.87
UBE3B-211ENST00000539843 KCPQ6ZWJ8 1503 aa20.45■□□□□ 0.86
UBE3B-211ENST00000539843 DALRD3Q5D0E6 543 aaKnown RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms