RNA–Protein interactions for RNA: ENST00000539610.1

MAP3K4-209, Transcript of mitogen-activated protein kinase kinase kinase 4, human

TSL 3

Gene MAP3K4, Length 295 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MAP3K4-209	ENST00000539610	CHSY3	Q70JA7	882 aa		4.92	□□□□□ -1.62
MAP3K4-209	ENST00000539610	TRIM11	Q96F44	468 aa		4.92	□□□□□ -1.62
MAP3K4-209	ENST00000539610	NLRP3	Q96P20	1036 aa		4.92	□□□□□ -1.62
MAP3K4-209	ENST00000539610	PLVAP	Q9BX97	442 aa		4.92	□□□□□ -1.62
MAP3K4-209	ENST00000539610	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	4.92	□□□□□ -1.62
MAP3K4-209	ENST00000539610	GPSM3	Q9Y4H4	160 aa		4.92	□□□□□ -1.62
MAP3K4-209	ENST00000539610	NEURL1B	A8MQ27	555 aa		4.91	□□□□□ -1.62
MAP3K4-209	ENST00000539610	PPP2R2D	Q66LE6	453 aa		4.91	□□□□□ -1.62
MAP3K4-209	ENST00000539610	DZIP3	Q86Y13	1208 aa	Known RBP	4.91	□□□□□ -1.62
MAP3K4-209	ENST00000539610	TRIM52	Q96A61	297 aa		4.91	□□□□□ -1.62
MAP3K4-209	ENST00000539610	KRTAP4-9	Q9BYQ8	210 aa		4.91	□□□□□ -1.62
MAP3K4-209	ENST00000539610	ARID1B	Q8NFD5	2236 aa	Predicted RBP	4.91	□□□□□ -1.62
MAP3K4-209	ENST00000539610	ARAF	P10398	606 aa		4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	YBX3	P16989	372 aa	Known RBP eCLIP	4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	FGFR3	P22607	806 aa		4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	LBR	Q14739	615 aa	Known RBP	4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	NR6A1	Q15406	480 aa		4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	MYSM1	Q5VVJ2	828 aa		4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	SEPT12	Q8IYM1	358 aa		4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	LRRN4	Q8WUT4	740 aa		4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	ABHD17A	Q96GS6	310 aa		4.9	□□□□□ -1.63
MAP3K4-209	ENST00000539610	TXK	P42681	527 aa		4.89	□□□□□ -1.63
MAP3K4-209	ENST00000539610	CLN3	Q13286	438 aa		4.89	□□□□□ -1.63
MAP3K4-209	ENST00000539610	NDFIP2	Q9NV92	336 aa		4.89	□□□□□ -1.63
MAP3K4-209	ENST00000539610	PAX4	O43316	350 aa		4.88	□□□□□ -1.63
MAP3K4-209	ENST00000539610	BNIP3L	O60238	219 aa		4.88	□□□□□ -1.63
MAP3K4-209	ENST00000539610	APBA3	O96018	575 aa		4.88	□□□□□ -1.63
MAP3K4-209	ENST00000539610	PARP9	Q8IXQ6	854 aa		4.88	□□□□□ -1.63
MAP3K4-209	ENST00000539610		A0A1B0GTH6	734 aa		4.87	□□□□□ -1.63
MAP3K4-209	ENST00000539610	PHKA2	P46019	1235 aa		4.87	□□□□□ -1.63
MAP3K4-209	ENST00000539610	KRTAP4-2	Q9BYR5	136 aa		4.87	□□□□□ -1.63
MAP3K4-209	ENST00000539610	RUBCNL	Q9H714	662 aa		4.87	□□□□□ -1.63
MAP3K4-209	ENST00000539610	CSB-PGBD3	P0DP91	1061 aa		4.86	□□□□□ -1.63
MAP3K4-209	ENST00000539610	EFHC2	Q5JST6	749 aa		4.86	□□□□□ -1.63
MAP3K4-209	ENST00000539610	AMER1	Q5JTC6	1135 aa	Predicted RBP	4.86	□□□□□ -1.63
MAP3K4-209	ENST00000539610	CC2D2B	Q6DHV5	1058 aa		4.86	□□□□□ -1.63
MAP3K4-209	ENST00000539610	PGBD3	Q8N328	593 aa		4.86	□□□□□ -1.63
MAP3K4-209	ENST00000539610	FMNL2	Q96PY5	1086 aa		4.86	□□□□□ -1.63
MAP3K4-209	ENST00000539610	KLF15	Q9UIH9	416 aa		4.86	□□□□□ -1.63
MAP3K4-209	ENST00000539610	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.86	□□□□□ -1.63
MAP3K4-209	ENST00000539610	H2AFB1	P0C5Y9	115 aa		4.85	□□□□□ -1.63
MAP3K4-209	ENST00000539610	H2AFB2	P0C5Z0	115 aa		4.85	□□□□□ -1.63
MAP3K4-209	ENST00000539610	ERVK-9	P63128	1117 aa		4.85	□□□□□ -1.63
MAP3K4-209	ENST00000539610	PRRT3	Q5FWE3	981 aa		4.85	□□□□□ -1.63
MAP3K4-209	ENST00000539610	BARGIN	Q6ZT62	677 aa		4.85	□□□□□ -1.63
MAP3K4-209	ENST00000539610	FCHSD1	Q86WN1	690 aa		4.85	□□□□□ -1.63
MAP3K4-209	ENST00000539610	SPDYE3	A6NKU9	549 aa		4.84	□□□□□ -1.63
MAP3K4-209	ENST00000539610	ADH6	P28332	368 aa		4.84	□□□□□ -1.63
MAP3K4-209	ENST00000539610	MSX1	P28360	303 aa		4.84	□□□□□ -1.63
MAP3K4-209	ENST00000539610	FZD5	Q13467	585 aa		4.84	□□□□□ -1.63
MAP3K4-209	ENST00000539610	CYP2U1	Q7Z449	544 aa		4.84	□□□□□ -1.63
MAP3K4-209	ENST00000539610	ARHGEF10L	Q9HCE6	1279 aa		4.84	□□□□□ -1.63
MAP3K4-209	ENST00000539610	GIGYF1	O75420	1035 aa	Predicted RBP	4.83	□□□□□ -1.64
MAP3K4-209	ENST00000539610	CLK2	P49760	499 aa	Known RBP	4.83	□□□□□ -1.64
MAP3K4-209	ENST00000539610	FAM229A	H3BQW9	127 aa		4.82	□□□□□ -1.64
MAP3K4-209	ENST00000539610	CENPC	Q03188	943 aa		4.82	□□□□□ -1.64
MAP3K4-209	ENST00000539610	NACC1	Q96RE7	527 aa		4.82	□□□□□ -1.64
MAP3K4-209	ENST00000539610	AVEN	Q9NQS1	362 aa	Predicted RBP	4.82	□□□□□ -1.64
MAP3K4-209	ENST00000539610	ELN	P15502	786 aa		4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	C4orf17	Q53FE4	359 aa		4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	EPS8L1	Q8TE68	723 aa		4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	CNKSR1	Q969H4	720 aa		4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	ESYT1	Q9BSJ8	1104 aa		4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	ZCCHC2	Q9C0B9	1178 aa	Known RBP	4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	CRISPLD1	Q9H336	500 aa		4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	OSBPL3	Q9H4L5	887 aa		4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	RTN4	Q9NQC3	1192 aa	Known RBP	4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	RAB6B	Q9NRW1	208 aa		4.81	□□□□□ -1.64
MAP3K4-209	ENST00000539610	TRAK2	O60296	914 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	ZMYND10	O75800	440 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	IL2RA	P01589	272 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	SCTR	P47872	440 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	GRIK4	Q16099	956 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	FIGNL1	Q6PIW4	674 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	CCDC125	Q86Z20	511 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	DNAAF2	Q9NVR5	837 aa	Known RBP	4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	HCN2	Q9UL51	889 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	PCDHGC4	Q9Y5F7	938 aa		4.8	□□□□□ -1.64
MAP3K4-209	ENST00000539610	TRIM66	O15016	1216 aa		4.79	□□□□□ -1.64
MAP3K4-209	ENST00000539610	PCBP4	P57723	403 aa	Known RBP	4.79	□□□□□ -1.64
MAP3K4-209	ENST00000539610	TRIM28	Q13263	835 aa	Known RBP	4.79	□□□□□ -1.64
MAP3K4-209	ENST00000539610	GNAS	Q5JWF2	1037 aa		4.79	□□□□□ -1.64
MAP3K4-209	ENST00000539610	FAM182B	Q5T319	152 aa		4.79	□□□□□ -1.64
MAP3K4-209	ENST00000539610	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	4.79	□□□□□ -1.64
MAP3K4-209	ENST00000539610	PNMA1	Q8ND90	353 aa		4.79	□□□□□ -1.64
MAP3K4-209	ENST00000539610	POLR3E	Q9NVU0	708 aa		4.79	□□□□□ -1.64
MAP3K4-209	ENST00000539610	GNRH1	P01148	92 aa		4.78	□□□□□ -1.64
MAP3K4-209	ENST00000539610	CD33	P20138	364 aa		4.78	□□□□□ -1.64
MAP3K4-209	ENST00000539610	COL9A3	Q14050	684 aa	Predicted RBP	4.78	□□□□□ -1.64
MAP3K4-209	ENST00000539610	TMEM214	Q6NUQ4	689 aa	Known RBP	4.78	□□□□□ -1.64
MAP3K4-209	ENST00000539610	FHDC1	Q9C0D6	1143 aa	Predicted RBP	4.78	□□□□□ -1.64
MAP3K4-209	ENST00000539610	RNF112	Q9ULX5	631 aa		4.78	□□□□□ -1.64
MAP3K4-209	ENST00000539610	HRH3	Q9Y5N1	445 aa		4.78	□□□□□ -1.64
MAP3K4-209	ENST00000539610	ELOA3C	A0A087WX78	387 aa	Predicted RBP	4.77	□□□□□ -1.65
MAP3K4-209	ENST00000539610	ELOA3D	A6NLF2	546 aa	Predicted RBP	4.77	□□□□□ -1.65
MAP3K4-209	ENST00000539610	C9orf172	C9J069	976 aa		4.77	□□□□□ -1.65
MAP3K4-209	ENST00000539610	ATXN7	O15265	892 aa	Predicted RBP	4.77	□□□□□ -1.65
MAP3K4-209	ENST00000539610	MAPT	P10636	758 aa	Known RBP	4.77	□□□□□ -1.65
MAP3K4-209	ENST00000539610	GTF2E1	P29083	439 aa	Predicted RBP	4.77	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms