RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 RTL1A6NKG5 1358 aa17.01■□□□□ 0.31
YBX3-207ENST00000539204 ITPK1Q13572 414 aa17■□□□□ 0.31
YBX3-207ENST00000539204 NKX1-1Q15270 411 aaPredicted RBP17■□□□□ 0.31
YBX3-207ENST00000539204 RNF181Q9P0P0 153 aa17■□□□□ 0.31
YBX3-207ENST00000539204 PIM2Q9P1W9 311 aa17■□□□□ 0.31
YBX3-207ENST00000539204 RTCBQ9Y3I0 505 aaKnown RBP17■□□□□ 0.31
YBX3-207ENST00000539204 TOGARAM1Q9Y4F4 1720 aa16.99■□□□□ 0.31
YBX3-207ENST00000539204 NEUROD1Q13562 356 aa16.99■□□□□ 0.31
YBX3-207ENST00000539204 HSP90AB2PQ58FF8 381 aa16.99■□□□□ 0.31
YBX3-207ENST00000539204 SIN3AQ96ST3 1273 aa16.99■□□□□ 0.31
YBX3-207ENST00000539204 TMOD3Q9NYL9 352 aa16.99■□□□□ 0.31
YBX3-207ENST00000539204 PARP3Q9Y6F1 533 aa16.99■□□□□ 0.31
YBX3-207ENST00000539204 KCPQ6ZWJ8 1503 aa16.98■□□□□ 0.31
YBX3-207ENST00000539204 KCNA3P22001 575 aa16.98■□□□□ 0.31
YBX3-207ENST00000539204 DALRD3Q5D0E6 543 aaKnown RBP16.98■□□□□ 0.31
YBX3-207ENST00000539204 ASAP1Q9ULH1 1129 aa16.98■□□□□ 0.31
YBX3-207ENST00000539204 N4BP2Q86UW6 1770 aaPredicted RBP16.97■□□□□ 0.31
YBX3-207ENST00000539204 SPG7Q9UQ90 795 aa16.97■□□□□ 0.31
YBX3-207ENST00000539204 RFC4P35249 363 aa16.96■□□□□ 0.31
YBX3-207ENST00000539204 ARHGEF1Q92888 912 aaKnown RBP16.96■□□□□ 0.31
YBX3-207ENST00000539204 C10orf71Q711Q0 1435 aa16.96■□□□□ 0.3
YBX3-207ENST00000539204 INSRP06213 1382 aa16.95■□□□□ 0.3
YBX3-207ENST00000539204 DCAF5Q96JK2 942 aa16.95■□□□□ 0.3
YBX3-207ENST00000539204 GGNBP2Q9H3C7 697 aa16.95■□□□□ 0.3
YBX3-207ENST00000539204 KIF13BQ9NQT8 1826 aa16.95■□□□□ 0.3
YBX3-207ENST00000539204 FYB1O15117 783 aa16.94■□□□□ 0.3
YBX3-207ENST00000539204 GYS1P13807 737 aa16.94■□□□□ 0.3
YBX3-207ENST00000539204 ADRA2BP18089 450 aa16.94■□□□□ 0.3
YBX3-207ENST00000539204 ITGB4P16144 1822 aa16.93■□□□□ 0.3
YBX3-207ENST00000539204 VEGFAP15692 232 aaPredicted RBP16.93■□□□□ 0.3
YBX3-207ENST00000539204 RC3H1Q5TC82 1133 aaKnown RBP16.93■□□□□ 0.3
YBX3-207ENST00000539204 ATG3Q9NT62 314 aa16.93■□□□□ 0.3
YBX3-207ENST00000539204 SLC34A2O95436 690 aa16.92■□□□□ 0.3
YBX3-207ENST00000539204 KIAA1551Q9HCM1 1747 aa16.92■□□□□ 0.3
YBX3-207ENST00000539204 SLC24A1O60721 1099 aa16.91■□□□□ 0.3
YBX3-207ENST00000539204 MAP2P11137 1827 aaKnown RBP16.91■□□□□ 0.3
YBX3-207ENST00000539204 RPS6KA4O75676 772 aa16.9■□□□□ 0.3
YBX3-207ENST00000539204 IFNL2Q8IZJ0 200 aa16.9■□□□□ 0.3
YBX3-207ENST00000539204 RBM42Q9BTD8 480 aaKnown RBP16.9■□□□□ 0.3
YBX3-207ENST00000539204 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.9■□□□□ 0.35e-7■■□□□ 13
YBX3-207ENST00000539204 FLT4P35916 1363 aa16.89■□□□□ 0.3
YBX3-207ENST00000539204 GLTPD2A6NH11 291 aa16.89■□□□□ 0.29
YBX3-207ENST00000539204 KIF24Q5T7B8 1368 aa16.89■□□□□ 0.29
YBX3-207ENST00000539204 CHRNA5P30532 468 aa16.88■□□□□ 0.29
YBX3-207ENST00000539204 ZC3H4Q9UPT8 1303 aaKnown RBP16.88■□□□□ 0.29
YBX3-207ENST00000539204 PHKG2P15735 406 aa16.87■□□□□ 0.29
YBX3-207ENST00000539204 SLC4A9Q96Q91 983 aa16.87■□□□□ 0.29
YBX3-207ENST00000539204 ARFGEF1Q9Y6D6 1849 aa16.86■□□□□ 0.29
YBX3-207ENST00000539204 LMNB1P20700 586 aa16.86■□□□□ 0.29
YBX3-207ENST00000539204 C4AP0C0L4 1744 aa16.86■□□□□ 0.29
YBX3-207ENST00000539204 TNRC6CQ9HCJ0 1690 aaKnown RBP16.85■□□□□ 0.29
YBX3-207ENST00000539204 BRCA1P38398 1863 aaKnown RBP16.85■□□□□ 0.29
YBX3-207ENST00000539204 PPM1GO15355 546 aaPredicted RBP16.85■□□□□ 0.29
YBX3-207ENST00000539204 TESK2Q96S53 571 aa16.85■□□□□ 0.29
YBX3-207ENST00000539204 CNTNAP4Q9C0A0 1308 aa16.85■□□□□ 0.29
YBX3-207ENST00000539204 ST20-MTHFSA0A0A6YYL1 179 aa16.84■□□□□ 0.29
YBX3-207ENST00000539204 FKBP8Q14318 412 aa16.84■□□□□ 0.29
YBX3-207ENST00000539204 PKD1L3Q7Z443 1732 aa16.84■□□□□ 0.29
YBX3-207ENST00000539204 ERVV-2B6SEH9 535 aa16.83■□□□□ 0.28
YBX3-207ENST00000539204 RASSF7Q02833 373 aa16.83■□□□□ 0.28
YBX3-207ENST00000539204 DPY19L2Q6NUT2 758 aa16.83■□□□□ 0.28
YBX3-207ENST00000539204 EYA1Q99502 592 aa16.83■□□□□ 0.28
YBX3-207ENST00000539204 PRDM10Q9NQV6 1147 aa16.83■□□□□ 0.28
YBX3-207ENST00000539204 MKRN1Q9UHC7 482 aaKnown RBP16.83■□□□□ 0.28
YBX3-207ENST00000539204 EMILIN1Q9Y6C2 1016 aa16.83■□□□□ 0.28
YBX3-207ENST00000539204 TONSLQ96HA7 1378 aa16.82■□□□□ 0.28
YBX3-207ENST00000539204 DDR1Q08345 913 aa16.82■□□□□ 0.28
YBX3-207ENST00000539204 CREBZFQ9NS37 354 aa16.82■□□□□ 0.28
YBX3-207ENST00000539204 SRP68Q9UHB9 627 aaKnown RBP16.82■□□□□ 0.28
YBX3-207ENST00000539204 KDRP35968 1356 aa16.81■□□□□ 0.28
YBX3-207ENST00000539204 SBF1O95248 1867 aa16.81■□□□□ 0.28
YBX3-207ENST00000539204 FOXN1O15353 648 aa16.8■□□□□ 0.28
YBX3-207ENST00000539204 TM4SF1P30408 202 aa16.8■□□□□ 0.28
YBX3-207ENST00000539204 WASHC2AQ641Q2 1341 aa16.79■□□□□ 0.28
YBX3-207ENST00000539204 USP42Q9H9J4 1324 aaKnown RBP16.79■□□□□ 0.28
YBX3-207ENST00000539204 POTECB2RU33 542 aa16.79■□□□□ 0.28
YBX3-207ENST00000539204 POLRMTO00411 1230 aaKnown RBP16.79■□□□□ 0.28
YBX3-207ENST00000539204 HSP90AB1P08238 724 aaKnown RBP16.79■□□□□ 0.28
YBX3-207ENST00000539204 CABP4P57796 275 aa16.79■□□□□ 0.28
YBX3-207ENST00000539204 PCDH10Q9P2E7 1040 aa16.79■□□□□ 0.28
YBX3-207ENST00000539204 KDM6AO15550 1401 aaPredicted RBP16.79■□□□□ 0.28
YBX3-207ENST00000539204 NCAPD2Q15021 1401 aa16.79■□□□□ 0.28
YBX3-207ENST00000539204 CRKLP46109 303 aaKnown RBP16.78■□□□□ 0.28
YBX3-207ENST00000539204 CTCFP49711 727 aaPredicted RBP16.78■□□□□ 0.28
YBX3-207ENST00000539204 TTLL6Q8N841 843 aa16.78■□□□□ 0.28
YBX3-207ENST00000539204 AIDAQ96BJ3 306 aa16.78■□□□□ 0.28
YBX3-207ENST00000539204 PTCD1O75127 700 aaKnown RBP16.77■□□□□ 0.28
YBX3-207ENST00000539204 ZPR1O75312 459 aa16.77■□□□□ 0.28
YBX3-207ENST00000539204 CHADLQ6NUI6 762 aa16.77■□□□□ 0.28
YBX3-207ENST00000539204 FAM161AQ3B820 660 aa16.74■□□□□ 0.27
YBX3-207ENST00000539204 PLEKHO1Q53GL0 409 aaPredicted RBP16.73■□□□□ 0.27
YBX3-207ENST00000539204 USPL1Q5W0Q7 1092 aa16.73■□□□□ 0.27
YBX3-207ENST00000539204 ZNF831Q5JPB2 1677 aa16.72■□□□□ 0.27
YBX3-207ENST00000539204 MYH14Q7Z406 1995 aaKnown RBP16.72■□□□□ 0.27
YBX3-207ENST00000539204 H0YIN7 160 aa16.72■□□□□ 0.27
YBX3-207ENST00000539204 NFKBIEO00221 500 aa16.72■□□□□ 0.27
YBX3-207ENST00000539204 LBX1P52954 281 aa16.72■□□□□ 0.27
YBX3-207ENST00000539204 ERFEQ4G0M1 354 aa16.72■□□□□ 0.27
YBX3-207ENST00000539204 INTS5Q6P9B9 1019 aaKnown RBP16.72■□□□□ 0.27
YBX3-207ENST00000539204 NFATC2IPQ8NCF5 419 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms