RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 LNPKQ9C0E8 428 aa25.87■■□□□ 1.73
SMPDL3A-203ENST00000539041 TEFQ10587 303 aa25.87■■□□□ 1.73
SMPDL3A-203ENST00000539041 PXDNLA1KZ92 1463 aa25.86■■□□□ 1.73
SMPDL3A-203ENST00000539041 RNMTO43148 476 aaKnown RBP25.86■■□□□ 1.73
SMPDL3A-203ENST00000539041 SEC24BO95487 1268 aa25.86■■□□□ 1.73
SMPDL3A-203ENST00000539041 FLIIQ13045 1269 aa25.86■■□□□ 1.73
SMPDL3A-203ENST00000539041 ANKRD44Q8N8A2 993 aa25.86■■□□□ 1.73
SMPDL3A-203ENST00000539041 ANKRD45Q5TZF3 282 aa25.85■■□□□ 1.73
SMPDL3A-203ENST00000539041 RPAP2Q8IXW5 612 aaPredicted RBP25.85■■□□□ 1.73
SMPDL3A-203ENST00000539041 EIF4A1P60842 406 aaKnown RBP25.84■■□□□ 1.73
SMPDL3A-203ENST00000539041 MPRIPQ6WCQ1 1025 aa25.84■■□□□ 1.73
SMPDL3A-203ENST00000539041 PKD1L3Q7Z443 1732 aa25.84■■□□□ 1.73
SMPDL3A-203ENST00000539041 ABCA3Q99758 1704 aa25.84■■□□□ 1.73
SMPDL3A-203ENST00000539041 F6X3S4 739 aa25.84■■□□□ 1.73
SMPDL3A-203ENST00000539041 HOXB7P09629 217 aa25.84■■□□□ 1.73
SMPDL3A-203ENST00000539041 NECTIN2Q92692 538 aa25.84■■□□□ 1.73
SMPDL3A-203ENST00000539041 MEIS3Q99687 375 aa25.84■■□□□ 1.73
SMPDL3A-203ENST00000539041 HDGFL1Q5TGJ6 251 aa25.83■■□□□ 1.73
SMPDL3A-203ENST00000539041 SLC4A10Q6U841 1118 aa25.83■■□□□ 1.73
SMPDL3A-203ENST00000539041 BRINP3Q76B58 766 aa25.82■■□□□ 1.72
SMPDL3A-203ENST00000539041 FKBP5Q13451 457 aaPredicted RBP25.82■■□□□ 1.72
SMPDL3A-203ENST00000539041 CEP85Q6P2H3 762 aa25.82■■□□□ 1.72
SMPDL3A-203ENST00000539041 CABLES1Q8TDN4 633 aa25.82■■□□□ 1.72
SMPDL3A-203ENST00000539041 CHMP4AQ9BY43 222 aa25.82■■□□□ 1.72
SMPDL3A-203ENST00000539041 DCTPP1Q9H773 170 aa25.82■■□□□ 1.72
SMPDL3A-203ENST00000539041 CPDO75976 1380 aa25.81■■□□□ 1.72
SMPDL3A-203ENST00000539041 BTBD11A6QL63 1104 aa25.81■■□□□ 1.72
SMPDL3A-203ENST00000539041 UPF2Q9HAU5 1272 aaKnown RBP25.81■■□□□ 1.72
SMPDL3A-203ENST00000539041 PLEKHG2Q9H7P9 1386 aa25.8■■□□□ 1.72
SMPDL3A-203ENST00000539041 ZNF335Q9H4Z2 1342 aaPredicted RBP25.8■■□□□ 1.72
SMPDL3A-203ENST00000539041 RAPGEF4Q8WZA2 1011 aa25.79■■□□□ 1.72
SMPDL3A-203ENST00000539041 NLRP2Q9NX02 1062 aa25.79■■□□□ 1.72
SMPDL3A-203ENST00000539041 NHSL1Q5SYE7 1610 aa25.78■■□□□ 1.72
SMPDL3A-203ENST00000539041 KCNQ3O43525 872 aa25.77■■□□□ 1.72
SMPDL3A-203ENST00000539041 TATP17735 454 aaPredicted RBP25.77■■□□□ 1.72
SMPDL3A-203ENST00000539041 PARP4Q9UKK3 1724 aaKnown RBP25.77■■□□□ 1.72
SMPDL3A-203ENST00000539041 MEGF6O75095 1541 aa25.77■■□□□ 1.72
SMPDL3A-203ENST00000539041 CSB-PGBD3P0DP91 1061 aa25.75■■□□□ 1.71
SMPDL3A-203ENST00000539041 EIF2S2P20042 333 aaKnown RBP25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 MYT1Q01538 1121 aa25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 CHRNA2Q15822 529 aa25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 BMP2KLQ5H9B9 411 aa25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 DAXXQ9UER7 740 aaPredicted RBP25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 HMMRO75330 724 aa25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 TBC1D32Q96NH3 1257 aa25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 SLAIN2Q9P270 581 aa25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 SPG7Q9UQ90 795 aa25.74■■□□□ 1.71
SMPDL3A-203ENST00000539041 SOS2Q07890 1332 aaPredicted RBP25.73■■□□□ 1.71
SMPDL3A-203ENST00000539041 C5P01031 1676 aa25.73■■□□□ 1.71
SMPDL3A-203ENST00000539041 GNAI2P04899 355 aa25.73■■□□□ 1.71
SMPDL3A-203ENST00000539041 GNAI3P08754 354 aa25.73■■□□□ 1.71
SMPDL3A-203ENST00000539041 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.73■■□□□ 1.71
SMPDL3A-203ENST00000539041 HEG1Q9ULI3 1381 aa25.72■■□□□ 1.71
SMPDL3A-203ENST00000539041 PHAXQ9H814 394 aaKnown RBP25.72■■□□□ 1.71
SMPDL3A-203ENST00000539041 KDM6AO15550 1401 aaPredicted RBP25.71■■□□□ 1.71
SMPDL3A-203ENST00000539041 CHPF2Q9P2E5 772 aa25.7■■□□□ 1.7
SMPDL3A-203ENST00000539041 MRC1P22897 1456 aa25.69■■□□□ 1.7
SMPDL3A-203ENST00000539041 PHKG2P15735 406 aa25.69■■□□□ 1.7
SMPDL3A-203ENST00000539041 IFNL2Q8IZJ0 200 aa25.67■■□□□ 1.7
SMPDL3A-203ENST00000539041 GIGYF1O75420 1035 aaPredicted RBP25.67■■□□□ 1.7
SMPDL3A-203ENST00000539041 SLC4A3P48751 1232 aa25.66■■□□□ 1.7
SMPDL3A-203ENST00000539041 MFAP1P55081 439 aaKnown RBP25.66■■□□□ 1.7
SMPDL3A-203ENST00000539041 PLEKHM2Q8IWE5 1019 aa25.66■■□□□ 1.7
SMPDL3A-203ENST00000539041 DBF4Q9UBU7 674 aaPredicted RBP25.66■■□□□ 1.7
SMPDL3A-203ENST00000539041 SLC52A2Q9HAB3 445 aa25.65■■□□□ 1.7
SMPDL3A-203ENST00000539041 TUBGCP6Q96RT7 1819 aa25.64■■□□□ 1.69
SMPDL3A-203ENST00000539041 SRCIN1Q9C0H9 1055 aa25.64■■□□□ 1.69
SMPDL3A-203ENST00000539041 ATP8B2P98198 1209 aa25.63■■□□□ 1.69
SMPDL3A-203ENST00000539041 BECN1Q14457 450 aa25.63■■□□□ 1.69
SMPDL3A-203ENST00000539041 DNAAF4Q8WXU2 420 aa25.63■■□□□ 1.69
SMPDL3A-203ENST00000539041 C22orf23Q9BZE7 217 aa25.63■■□□□ 1.69
SMPDL3A-203ENST00000539041 USP44Q9H0E7 712 aa25.63■■□□□ 1.69
SMPDL3A-203ENST00000539041 PRDM11Q9NQV5 511 aa25.63■■□□□ 1.69
SMPDL3A-203ENST00000539041 LAMB4A4D0S4 1761 aa25.63■■□□□ 1.69
SMPDL3A-203ENST00000539041 COL5A2P05997 1499 aaPredicted RBP25.62■■□□□ 1.69
SMPDL3A-203ENST00000539041 SHANK3Q9BYB0 1731 aa25.62■■□□□ 1.69
SMPDL3A-203ENST00000539041 WDR17Q8IZU2 1322 aa25.62■■□□□ 1.69
SMPDL3A-203ENST00000539041 UBTFL1P0CB47 393 aaPredicted RBP25.61■■□□□ 1.69
SMPDL3A-203ENST00000539041 LRRFIP2Q9Y608 721 aaKnown RBP25.61■■□□□ 1.69
SMPDL3A-203ENST00000539041 ADCY9O60503 1353 aa25.6■■□□□ 1.69
SMPDL3A-203ENST00000539041 ANXA1P04083 346 aa25.6■■□□□ 1.69
SMPDL3A-203ENST00000539041 HSP90AB1P08238 724 aaKnown RBP25.6■■□□□ 1.69
SMPDL3A-203ENST00000539041 TTC22Q5TAA0 569 aa25.6■■□□□ 1.69
SMPDL3A-203ENST00000539041 DCAF5Q96JK2 942 aa25.6■■□□□ 1.69
SMPDL3A-203ENST00000539041 PI4KAP2A4QPH2 592 aa25.59■■□□□ 1.69
SMPDL3A-203ENST00000539041 SMARCA5O60264 1052 aaPredicted RBP25.59■■□□□ 1.69
SMPDL3A-203ENST00000539041 ZNF790Q6PG37 636 aa25.59■■□□□ 1.69
SMPDL3A-203ENST00000539041 C16orf71Q8IYS4 520 aaPredicted RBP25.59■■□□□ 1.69
SMPDL3A-203ENST00000539041 PI4KAP1Q8N8J0 262 aa25.59■■□□□ 1.69
SMPDL3A-203ENST00000539041 CYP27B1O15528 508 aa25.59■■□□□ 1.69
SMPDL3A-203ENST00000539041 BEND3Q5T5X7 828 aa25.59■■□□□ 1.69
SMPDL3A-203ENST00000539041 APBB1O00213 710 aa25.58■■□□□ 1.69
SMPDL3A-203ENST00000539041 GSPT1P15170 499 aaKnown RBP25.58■■□□□ 1.69
SMPDL3A-203ENST00000539041 NBR1Q14596 966 aa25.58■■□□□ 1.69
SMPDL3A-203ENST00000539041 PRAMEF22A3QJZ6 481 aa25.57■■□□□ 1.68
SMPDL3A-203ENST00000539041 CDC45O75419 566 aa25.57■■□□□ 1.68
SMPDL3A-203ENST00000539041 HYPKQ9NX55 129 aa25.57■■□□□ 1.68
SMPDL3A-203ENST00000539041 PNMA6EA0A0J9YXQ4 647 aa25.56■■□□□ 1.68
SMPDL3A-203ENST00000539041 SLC39A6Q13433 755 aa25.56■■□□□ 1.68
SMPDL3A-203ENST00000539041 NFATC2IPQ8NCF5 419 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms