RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SBF1O95248 1867 aa17.42■□□□□ 0.38
CLSTN3-208ENST00000538933 C10orf71Q711Q0 1435 aa17.42■□□□□ 0.38
CLSTN3-208ENST00000538933 KCNA3P22001 575 aa17.42■□□□□ 0.38
CLSTN3-208ENST00000538933 ITPK1Q13572 414 aa17.42■□□□□ 0.38
CLSTN3-208ENST00000538933 RRS1Q15050 365 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-208ENST00000538933 NKX1-1Q15270 411 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-208ENST00000538933 DPEP1P16444 411 aa17.41■□□□□ 0.38
CLSTN3-208ENST00000538933 C9orf131Q5VYM1 1079 aa17.41■□□□□ 0.38
CLSTN3-208ENST00000538933 GNPATO15228 680 aa17.4■□□□□ 0.38
CLSTN3-208ENST00000538933 KCPQ6ZWJ8 1503 aa17.4■□□□□ 0.38
CLSTN3-208ENST00000538933 HSP90AB2PQ58FF8 381 aa17.39■□□□□ 0.37
CLSTN3-208ENST00000538933 C16orf71Q8IYS4 520 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-208ENST00000538933 C4AP0C0L4 1744 aa17.38■□□□□ 0.37
CLSTN3-208ENST00000538933 FCHSD2O94868 740 aa17.38■□□□□ 0.37
CLSTN3-208ENST00000538933 ASAP1Q9ULH1 1129 aa17.38■□□□□ 0.37
CLSTN3-208ENST00000538933 TNRC6CQ9HCJ0 1690 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-208ENST00000538933 INSRP06213 1382 aa17.38■□□□□ 0.37
CLSTN3-208ENST00000538933 PLEKHG2Q9H7P9 1386 aa17.38■□□□□ 0.37
CLSTN3-208ENST00000538933 NLGN1Q8N2Q7 840 aa17.37■□□□□ 0.37
CLSTN3-208ENST00000538933 RRAGCQ9HB90 399 aa17.37■□□□□ 0.37
CLSTN3-208ENST00000538933 FYB1O15117 783 aa17.36■□□□□ 0.37
CLSTN3-208ENST00000538933 TMF1P82094 1093 aa17.36■□□□□ 0.37
CLSTN3-208ENST00000538933 CARD11Q9BXL7 1154 aa17.36■□□□□ 0.37
CLSTN3-208ENST00000538933 SMG6Q86US8 1419 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-208ENST00000538933 ATP6V1AP38606 617 aa17.35■□□□□ 0.37
CLSTN3-208ENST00000538933 KDM2BQ8NHM5 1336 aa17.35■□□□□ 0.37
CLSTN3-208ENST00000538933 NCAPD2Q15021 1401 aa17.35■□□□□ 0.37
CLSTN3-208ENST00000538933 ZNF831Q5JPB2 1677 aa17.34■□□□□ 0.37
CLSTN3-208ENST00000538933 TRAPPC3LQ5T215 181 aa17.34■□□□□ 0.37
CLSTN3-208ENST00000538933 DCAF5Q96JK2 942 aa17.34■□□□□ 0.37
CLSTN3-208ENST00000538933 MYH14Q7Z406 1995 aaKnown RBP17.33■□□□□ 0.37
CLSTN3-208ENST00000538933 HSPA1AP0DMV8 641 aaKnown RBP17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 HSPA1BP0DMV9 641 aaKnown RBP17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 GYS1P13807 737 aa17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 ARHGEF1Q92888 912 aaKnown RBP17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 SLC4A9Q96Q91 983 aa17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 TESK2Q96S53 571 aa17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 GGNBP2Q9H3C7 697 aa17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 ATG3Q9NT62 314 aa17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 CCDC87Q9NVE4 849 aa17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 COL5A3P25940 1745 aaPredicted RBP17.33■□□□□ 0.36
CLSTN3-208ENST00000538933 SMC1BQ8NDV3 1235 aa17.32■□□□□ 0.36
CLSTN3-208ENST00000538933 FLT4P35916 1363 aa17.31■□□□□ 0.36
CLSTN3-208ENST00000538933 KDRP35968 1356 aa17.31■□□□□ 0.36
CLSTN3-208ENST00000538933 KIF24Q5T7B8 1368 aa17.31■□□□□ 0.36
CLSTN3-208ENST00000538933 TMOD3Q9NYL9 352 aa17.31■□□□□ 0.36
CLSTN3-208ENST00000538933 RNF181Q9P0P0 153 aa17.31■□□□□ 0.36
CLSTN3-208ENST00000538933 PIM2Q9P1W9 311 aa17.31■□□□□ 0.36
CLSTN3-208ENST00000538933 RTCBQ9Y3I0 505 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-208ENST00000538933 SLC34A2O95436 690 aa17.3■□□□□ 0.36
CLSTN3-208ENST00000538933 ADRA2BP18089 450 aa17.29■□□□□ 0.36
CLSTN3-208ENST00000538933 RC3H1Q5TC82 1133 aaKnown RBP17.29■□□□□ 0.36
CLSTN3-208ENST00000538933 SPG7Q9UQ90 795 aa17.29■□□□□ 0.36
CLSTN3-208ENST00000538933 DALRD3Q5D0E6 543 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-208ENST00000538933 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.28■□□□□ 0.36
CLSTN3-208ENST00000538933 PARP3Q9Y6F1 533 aa17.28■□□□□ 0.36
CLSTN3-208ENST00000538933 KIF20BQ96Q89 1820 aa17.27■□□□□ 0.36
CLSTN3-208ENST00000538933 RPS6KA4O75676 772 aa17.27■□□□□ 0.36
CLSTN3-208ENST00000538933 KDM6AO15550 1401 aaPredicted RBP17.27■□□□□ 0.35
CLSTN3-208ENST00000538933 CCDC88AQ3V6T2 1871 aa17.27■□□□□ 0.35
CLSTN3-208ENST00000538933 PHKG2P15735 406 aa17.26■□□□□ 0.35
CLSTN3-208ENST00000538933 CNTNAP4Q9C0A0 1308 aa17.25■□□□□ 0.35
CLSTN3-208ENST00000538933 RFC4P35249 363 aa17.25■□□□□ 0.35
CLSTN3-208ENST00000538933 ANKRD26Q9UPS8 1709 aa17.24■□□□□ 0.35
CLSTN3-208ENST00000538933 ST20-MTHFSA0A0A6YYL1 179 aa17.24■□□□□ 0.35
CLSTN3-208ENST00000538933 VEGFAP15692 232 aaPredicted RBP17.24■□□□□ 0.35
CLSTN3-208ENST00000538933 CHRNA5P30532 468 aa17.24■□□□□ 0.35
CLSTN3-208ENST00000538933 DDR1Q08345 913 aa17.24■□□□□ 0.35
CLSTN3-208ENST00000538933 IFNL2Q8IZJ0 200 aa17.24■□□□□ 0.35
CLSTN3-208ENST00000538933 EMILIN1Q9Y6C2 1016 aa17.24■□□□□ 0.35
CLSTN3-208ENST00000538933 ZC3H4Q9UPT8 1303 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-208ENST00000538933 EYA1Q99502 592 aa17.23■□□□□ 0.35
CLSTN3-208ENST00000538933 GLTPD2A6NH11 291 aa17.22■□□□□ 0.35
CLSTN3-208ENST00000538933 POTECB2RU33 542 aa17.22■□□□□ 0.35
CLSTN3-208ENST00000538933 EIF4G2P78344 907 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLSTN3-208ENST00000538933 FKBP8Q14318 412 aa17.22■□□□□ 0.35
CLSTN3-208ENST00000538933 ADAMTS7Q9UKP4 1686 aa17.22■□□□□ 0.35
CLSTN3-208ENST00000538933 SRP68Q9UHB9 627 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-208ENST00000538933 TM4SF1P30408 202 aa17.2■□□□□ 0.34
CLSTN3-208ENST00000538933 RASSF7Q02833 373 aa17.2■□□□□ 0.34
CLSTN3-208ENST00000538933 RBM42Q9BTD8 480 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-208ENST00000538933 WASHC2AQ641Q2 1341 aa17.2■□□□□ 0.34
CLSTN3-208ENST00000538933 AFDNP55196 1824 aaKnown RBP17.19■□□□□ 0.34
CLSTN3-208ENST00000538933 ERVV-2B6SEH9 535 aa17.19■□□□□ 0.34
CLSTN3-208ENST00000538933 TIAM2Q8IVF5 1701 aa17.18■□□□□ 0.34
CLSTN3-208ENST00000538933 DLEC1Q9Y238 1755 aa17.18■□□□□ 0.34
CLSTN3-208ENST00000538933 POLRMTO00411 1230 aaKnown RBP17.18■□□□□ 0.34
CLSTN3-208ENST00000538933 LMNB1P20700 586 aa17.18■□□□□ 0.34
CLSTN3-208ENST00000538933 USP42Q9H9J4 1324 aaKnown RBP17.18■□□□□ 0.34
CLSTN3-208ENST00000538933 SLC24A1O60721 1099 aa17.17■□□□□ 0.34
CLSTN3-208ENST00000538933 CARD14Q9BXL6 1004 aa17.17■□□□□ 0.34
CLSTN3-208ENST00000538933 HSPA5P11021 654 aaKnown RBP17.16■□□□□ 0.34
CLSTN3-208ENST00000538933 TJP1Q07157 1748 aa17.16■□□□□ 0.34
CLSTN3-208ENST00000538933 NRXN2Q9P2S2 1712 aa17.16■□□□□ 0.34
CLSTN3-208ENST00000538933 DICER1Q9UPY3 1922 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-208ENST00000538933 FOXN1O15353 648 aa17.15■□□□□ 0.34
CLSTN3-208ENST00000538933 CRKLP46109 303 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-208ENST00000538933 PRDM10Q9NQV6 1147 aa17.15■□□□□ 0.34
CLSTN3-208ENST00000538933 PPM1GO15355 546 aaPredicted RBP17.14■□□□□ 0.33
CLSTN3-208ENST00000538933 CREBZFQ9NS37 354 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms