RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SLC4A9Q96Q91 983 aa11.58□□□□□ -0.56
USP28-203ENST00000537490 KNSTRNQ9Y448 316 aa11.58□□□□□ -0.56
USP28-203ENST00000537490 GNPATO15228 680 aa11.57□□□□□ -0.56
USP28-203ENST00000537490 GRIN3BO60391 1043 aa11.57□□□□□ -0.56
USP28-203ENST00000537490 ZNF530Q6P9A1 599 aaPredicted RBP11.57□□□□□ -0.56
USP28-203ENST00000537490 DCAF5Q96JK2 942 aa11.57□□□□□ -0.56
USP28-203ENST00000537490 TAF1LQ8IZX4 1826 aa11.57□□□□□ -0.56
USP28-203ENST00000537490 PLEKHG2Q9H7P9 1386 aa11.56□□□□□ -0.56
USP28-203ENST00000537490 HSP90AB1P08238 724 aaKnown RBP11.56□□□□□ -0.56
USP28-203ENST00000537490 IL13P35225 146 aa11.56□□□□□ -0.56
USP28-203ENST00000537490 CABP4P57796 275 aa11.56□□□□□ -0.56
USP28-203ENST00000537490 AMOTQ4VCS5 1084 aa11.56□□□□□ -0.56
USP28-203ENST00000537490 AMER1Q5JTC6 1135 aaPredicted RBP11.56□□□□□ -0.56
USP28-203ENST00000537490 SULT6B1Q6IMI4 303 aa11.56□□□□□ -0.56
USP28-203ENST00000537490 RBM42Q9BTD8 480 aaKnown RBP11.56□□□□□ -0.56
USP28-203ENST00000537490 KDM6AO15550 1401 aaPredicted RBP11.55□□□□□ -0.56
USP28-203ENST00000537490 MTHFSP49914 203 aa11.55□□□□□ -0.56
USP28-203ENST00000537490 KIF7Q2M1P5 1343 aa11.55□□□□□ -0.56
USP28-203ENST00000537490 KDRP35968 1356 aa11.54□□□□□ -0.56
USP28-203ENST00000537490 CHD4Q14839 1912 aa11.54□□□□□ -0.56
USP28-203ENST00000537490 C1QTNF8P60827 252 aa11.54□□□□□ -0.56
USP28-203ENST00000537490 WWC3Q9ULE0 1092 aa11.54□□□□□ -0.56
USP28-203ENST00000537490 UBR3Q6ZT12 1888 aa11.53□□□□□ -0.56
USP28-203ENST00000537490 PER1O15534 1290 aaPredicted RBP11.53□□□□□ -0.56
USP28-203ENST00000537490 C1orf141Q5JVX7 400 aa11.53□□□□□ -0.56
USP28-203ENST00000537490 TRAPPC3LQ5T215 181 aa11.53□□□□□ -0.56
USP28-203ENST00000537490 RC3H1Q5TC82 1133 aaKnown RBP11.53□□□□□ -0.56
USP28-203ENST00000537490 NFATC2IPQ8NCF5 419 aa11.53□□□□□ -0.56
USP28-203ENST00000537490 ARHGEF1Q92888 912 aaKnown RBP11.53□□□□□ -0.56
USP28-203ENST00000537490 RTCBQ9Y3I0 505 aaKnown RBP11.53□□□□□ -0.56
USP28-203ENST00000537490 PTCD1O75127 700 aaKnown RBP11.52□□□□□ -0.57
USP28-203ENST00000537490 RPS6KA4O75676 772 aa11.52□□□□□ -0.57
USP28-203ENST00000537490 MMP10P09238 476 aa11.52□□□□□ -0.57
USP28-203ENST00000537490 CNTNAP4Q9C0A0 1308 aa11.51□□□□□ -0.57
USP28-203ENST00000537490 UTRNP46939 3433 aa11.5□□□□□ -0.57
USP28-203ENST00000537490 GIGYF1O75420 1035 aaPredicted RBP11.5□□□□□ -0.57
USP28-203ENST00000537490 HMOX1P09601 288 aa11.5□□□□□ -0.57
USP28-203ENST00000537490 GYS1P13807 737 aa11.5□□□□□ -0.57
USP28-203ENST00000537490 CC2D1BQ5T0F9 858 aaKnown RBP11.5□□□□□ -0.57
USP28-203ENST00000537490 NLGN1Q8N2Q7 840 aa11.5□□□□□ -0.57
USP28-203ENST00000537490 LGR6Q9HBX8 967 aa11.5□□□□□ -0.57
USP28-203ENST00000537490 SENP3-EIF4A1A0A087X0R7 540 aa11.49□□□□□ -0.57
USP28-203ENST00000537490 RFC4P35249 363 aa11.49□□□□□ -0.57
USP28-203ENST00000537490 AKAP4Q5JQC9 854 aa11.49□□□□□ -0.57
USP28-203ENST00000537490 CRKLP46109 303 aaKnown RBP11.48□□□□□ -0.57
USP28-203ENST00000537490 ATP10DQ9P241 1426 aa11.47□□□□□ -0.57
USP28-203ENST00000537490 A0A0G2JLW4 131 aa11.47□□□□□ -0.57
USP28-203ENST00000537490 RNMTO43148 476 aaKnown RBP11.47□□□□□ -0.57
USP28-203ENST00000537490 DIAPH1O60610 1272 aaKnown RBP11.47□□□□□ -0.57
USP28-203ENST00000537490 TGFB2P61812 414 aa11.47□□□□□ -0.57
USP28-203ENST00000537490 CNGB1Q14028 1251 aaPredicted RBP11.47□□□□□ -0.57
USP28-203ENST00000537490 MTHFSDQ2M296 383 aaKnown RBP11.47□□□□□ -0.57
USP28-203ENST00000537490 INTS5Q6P9B9 1019 aaKnown RBP11.47□□□□□ -0.57
USP28-203ENST00000537490 DNAJC10Q8IXB1 793 aa11.47□□□□□ -0.57
USP28-203ENST00000537490 SLC52A2Q9HAB3 445 aa11.47□□□□□ -0.57
USP28-203ENST00000537490 SRP68Q9UHB9 627 aaKnown RBP11.47□□□□□ -0.57
USP28-203ENST00000537490 SLC39A6Q13433 755 aa11.46□□□□□ -0.57
USP28-203ENST00000537490 CCDC87Q9NVE4 849 aa11.46□□□□□ -0.57
USP28-203ENST00000537490 PARP3Q9Y6F1 533 aa11.46□□□□□ -0.57
USP28-203ENST00000537490 ZNF831Q5JPB2 1677 aa11.46□□□□□ -0.58
USP28-203ENST00000537490 PXDNLA1KZ92 1463 aa11.45□□□□□ -0.58
USP28-203ENST00000537490 ADCY9O60503 1353 aa11.45□□□□□ -0.58
USP28-203ENST00000537490 DPEP1P16444 411 aa11.45□□□□□ -0.58
USP28-203ENST00000537490 FKBP8Q14318 412 aa11.45□□□□□ -0.58
USP28-203ENST00000537490 ZNF526Q8TF50 670 aaPredicted RBP11.45□□□□□ -0.58
USP28-203ENST00000537490 C10orf71Q711Q0 1435 aa11.44□□□□□ -0.58
USP28-203ENST00000537490 USP42Q9H9J4 1324 aaKnown RBP11.44□□□□□ -0.58
USP28-203ENST00000537490 GPBP1L1Q9HC44 474 aaPredicted RBP11.44□□□□□ -0.58
USP28-203ENST00000537490 BCS1LQ9Y276 419 aa11.44□□□□□ -0.58
USP28-203ENST00000537490 CICQ96RK0 1608 aaPredicted RBP11.44□□□□□ -0.58
USP28-203ENST00000537490 MYH14Q7Z406 1995 aaKnown RBP11.44□□□□□ -0.58
USP28-203ENST00000537490 COL5A3P25940 1745 aaPredicted RBP11.43□□□□□ -0.58
USP28-203ENST00000537490 CYP19A1P11511 503 aaPredicted RBP11.43□□□□□ -0.58
USP28-203ENST00000537490 KCNA3P22001 575 aa11.43□□□□□ -0.58
USP28-203ENST00000537490 DDR1Q08345 913 aa11.43□□□□□ -0.58
USP28-203ENST00000537490 NPC1L1Q9UHC9 1359 aa11.42□□□□□ -0.58
USP28-203ENST00000537490 SOS1Q07889 1333 aaPredicted RBP11.42□□□□□ -0.58
USP28-203ENST00000537490 U2SURPO15042 1029 aaKnown RBP11.42□□□□□ -0.58
USP28-203ENST00000537490 FCHSD2O94868 740 aa11.42□□□□□ -0.58
USP28-203ENST00000537490 TM4SF1P30408 202 aa11.42□□□□□ -0.58
USP28-203ENST00000537490 USPL1Q5W0Q7 1092 aa11.42□□□□□ -0.58
USP28-203ENST00000537490 POLRMTO00411 1230 aaKnown RBP11.41□□□□□ -0.58
USP28-203ENST00000537490 ARHGAP27Q6ZUM4 889 aa11.41□□□□□ -0.58
USP28-203ENST00000537490 IL17REQ8NFR9 667 aa11.41□□□□□ -0.58
USP28-203ENST00000537490 ZBTB1Q9Y2K1 713 aa11.41□□□□□ -0.58
USP28-203ENST00000537490 SCN11AQ9UI33 1791 aa11.41□□□□□ -0.58
USP28-203ENST00000537490 C4AP0C0L4 1744 aa11.4□□□□□ -0.58
USP28-203ENST00000537490 TJP1Q07157 1748 aa11.4□□□□□ -0.58
USP28-203ENST00000537490 COL3A1P02461 1466 aaPredicted RBP11.4□□□□□ -0.58
USP28-203ENST00000537490 MRC1P22897 1456 aa11.4□□□□□ -0.58
USP28-203ENST00000537490 ZPR1O75312 459 aa11.4□□□□□ -0.58
USP28-203ENST00000537490 VSIG10Q8N0Z9 540 aa11.4□□□□□ -0.58
USP28-203ENST00000537490 BCL2L12Q9HB09 334 aa11.4□□□□□ -0.58
USP28-203ENST00000537490 KIAA1551Q9HCM1 1747 aa11.4□□□□□ -0.58
USP28-203ENST00000537490 KCPQ6ZWJ8 1503 aa11.4□□□□□ -0.59
USP28-203ENST00000537490 KIF13BQ9NQT8 1826 aa11.39□□□□□ -0.59
USP28-203ENST00000537490 KIF3CO14782 793 aa11.39□□□□□ -0.59
USP28-203ENST00000537490 CANXP27824 592 aaKnown RBP11.39□□□□□ -0.59
USP28-203ENST00000537490 CHRNA5P30532 468 aa11.39□□□□□ -0.59
USP28-203ENST00000537490 NFIXQ14938 502 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms