RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 WWC3Q9ULE0 1092 aa17.37■□□□□ 0.37
CAPN1-223ENST00000533079 N4BP2Q86UW6 1770 aaPredicted RBP17.37■□□□□ 0.37
CAPN1-223ENST00000533079 KDRP35968 1356 aa17.37■□□□□ 0.37
CAPN1-223ENST00000533079 COL5A3P25940 1745 aaPredicted RBP17.36■□□□□ 0.37
CAPN1-223ENST00000533079 MMP10P09238 476 aa17.36■□□□□ 0.37
CAPN1-223ENST00000533079 ATP6V1AP38606 617 aa17.35■□□□□ 0.37
CAPN1-223ENST00000533079 CDCA8Q53HL2 280 aa17.35■□□□□ 0.37
CAPN1-223ENST00000533079 DNAJC5GQ8N7S2 189 aa17.35■□□□□ 0.37
CAPN1-223ENST00000533079 ARFGEF1Q9Y6D6 1849 aa17.35■□□□□ 0.37
CAPN1-223ENST00000533079 ADRA2BP18089 450 aa17.34■□□□□ 0.37
CAPN1-223ENST00000533079 ITPK1Q13572 414 aa17.34■□□□□ 0.37
CAPN1-223ENST00000533079 NLGN1Q8N2Q7 840 aa17.34■□□□□ 0.37
CAPN1-223ENST00000533079 TNRC6CQ9HCJ0 1690 aaKnown RBP17.33■□□□□ 0.37
CAPN1-223ENST00000533079 SMIM5Q71RC9 77 aa17.33■□□□□ 0.36
CAPN1-223ENST00000533079 IFNL2Q8IZJ0 200 aa17.33■□□□□ 0.36
CAPN1-223ENST00000533079 RBM46Q8TBY0 533 aaKnown RBP17.33■□□□□ 0.36
CAPN1-223ENST00000533079 CCDC87Q9NVE4 849 aa17.33■□□□□ 0.36
CAPN1-223ENST00000533079 BCS1LQ9Y276 419 aa17.33■□□□□ 0.36
CAPN1-223ENST00000533079 RTCBQ9Y3I0 505 aaKnown RBP17.33■□□□□ 0.36
CAPN1-223ENST00000533079 PHKG2P15735 406 aa17.32■□□□□ 0.36
CAPN1-223ENST00000533079 ASAP1Q9ULH1 1129 aa17.32■□□□□ 0.36
CAPN1-223ENST00000533079 EMILIN1Q9Y6C2 1016 aa17.32■□□□□ 0.36
CAPN1-223ENST00000533079 WASHC2AQ641Q2 1341 aa17.31■□□□□ 0.36
CAPN1-223ENST00000533079 FSTL1Q12841 308 aa17.31■□□□□ 0.36
CAPN1-223ENST00000533079 TRAPPC3LQ5T215 181 aa17.31■□□□□ 0.36
CAPN1-223ENST00000533079 CNTNAP4Q9C0A0 1308 aa17.3■□□□□ 0.36
CAPN1-223ENST00000533079 RC3H1Q5TC82 1133 aaKnown RBP17.3■□□□□ 0.36
CAPN1-223ENST00000533079 C16orf71Q8IYS4 520 aaPredicted RBP17.3■□□□□ 0.36
CAPN1-223ENST00000533079 ARHGAP27Q6ZUM4 889 aa17.29■□□□□ 0.36
CAPN1-223ENST00000533079 NMRK2Q9NPI5 230 aa17.29■□□□□ 0.36
CAPN1-223ENST00000533079 ATG3Q9NT62 314 aa17.29■□□□□ 0.36
CAPN1-223ENST00000533079 KDM2BQ8NHM5 1336 aa17.28■□□□□ 0.36
CAPN1-223ENST00000533079 A0A0G2JLW4 131 aa17.28■□□□□ 0.36
CAPN1-223ENST00000533079 FCHSD2O94868 740 aa17.28■□□□□ 0.36
CAPN1-223ENST00000533079 JMYQ8N9B5 988 aa17.28■□□□□ 0.36
CAPN1-223ENST00000533079 KLRG1Q96E93 195 aa17.28■□□□□ 0.36
CAPN1-223ENST00000533079 GYS1P13807 737 aa17.27■□□□□ 0.36
CAPN1-223ENST00000533079 EYA1Q99502 592 aa17.27■□□□□ 0.36
CAPN1-223ENST00000533079 PARP3Q9Y6F1 533 aa17.27■□□□□ 0.36
CAPN1-223ENST00000533079 ERVV-2B6SEH9 535 aa17.26■□□□□ 0.35
CAPN1-223ENST00000533079 PPM1GO15355 546 aaPredicted RBP17.26■□□□□ 0.35
CAPN1-223ENST00000533079 HSP90AB1P08238 724 aaKnown RBP17.26■□□□□ 0.35
CAPN1-223ENST00000533079 DPEP1P16444 411 aa17.26■□□□□ 0.35
CAPN1-223ENST00000533079 RFC4P35249 363 aa17.26■□□□□ 0.35
CAPN1-223ENST00000533079 C9orf131Q5VYM1 1079 aa17.25■□□□□ 0.35
CAPN1-223ENST00000533079 ARHGEF1Q92888 912 aaKnown RBP17.25■□□□□ 0.35
CAPN1-223ENST00000533079 KCPQ6ZWJ8 1503 aa17.25■□□□□ 0.35
CAPN1-223ENST00000533079 ZC3H4Q9UPT8 1303 aaKnown RBP17.24■□□□□ 0.35
CAPN1-223ENST00000533079 RPS6KA4O75676 772 aa17.24■□□□□ 0.35
CAPN1-223ENST00000533079 DCAF5Q96JK2 942 aa17.24■□□□□ 0.35
CAPN1-223ENST00000533079 CARD14Q9BXL6 1004 aa17.24■□□□□ 0.35
CAPN1-223ENST00000533079 PCGF6Q9BYE7 350 aa17.24■□□□□ 0.35
CAPN1-223ENST00000533079 PIM2Q9P1W9 311 aa17.24■□□□□ 0.35
CAPN1-223ENST00000533079 KCNA3P22001 575 aa17.22■□□□□ 0.35
CAPN1-223ENST00000533079 SLC4A9Q96Q91 983 aa17.22■□□□□ 0.35
CAPN1-223ENST00000533079 RBM42Q9BTD8 480 aaKnown RBP17.22■□□□□ 0.35
CAPN1-223ENST00000533079 TJP1Q07157 1748 aa17.21■□□□□ 0.35
CAPN1-223ENST00000533079 DALRD3Q5D0E6 543 aaKnown RBP17.21■□□□□ 0.35
CAPN1-223ENST00000533079 POLKQ9UBT6 870 aa17.21■□□□□ 0.35
CAPN1-223ENST00000533079 KDM6AO15550 1401 aaPredicted RBP17.21■□□□□ 0.34
CAPN1-223ENST00000533079 PCNTO95613 3336 aa17.2■□□□□ 0.34
CAPN1-223ENST00000533079 SMC1BQ8NDV3 1235 aa17.2■□□□□ 0.34
CAPN1-223ENST00000533079 RNF181Q9P0P0 153 aa17.2■□□□□ 0.34
CAPN1-223ENST00000533079 USP42Q9H9J4 1324 aaKnown RBP17.2■□□□□ 0.34
CAPN1-223ENST00000533079 EIF4A2Q14240 407 aaKnown RBP17.19■□□□□ 0.34
CAPN1-223ENST00000533079 COL13A1Q5TAT6 717 aaPredicted RBP17.19■□□□□ 0.34
CAPN1-223ENST00000533079 ADAMTS7Q9UKP4 1686 aa17.19■□□□□ 0.34
CAPN1-223ENST00000533079 DLEC1Q9Y238 1755 aa17.18■□□□□ 0.34
CAPN1-223ENST00000533079 AMOTQ4VCS5 1084 aa17.18■□□□□ 0.34
CAPN1-223ENST00000533079 MYH14Q7Z406 1995 aaKnown RBP17.18■□□□□ 0.34
CAPN1-223ENST00000533079 SBF1O95248 1867 aa17.17■□□□□ 0.34
CAPN1-223ENST00000533079 CABP4P57796 275 aa17.17■□□□□ 0.34
CAPN1-223ENST00000533079 TIAM2Q8IVF5 1701 aa17.16■□□□□ 0.34
CAPN1-223ENST00000533079 CRKLP46109 303 aaKnown RBP17.16■□□□□ 0.34
CAPN1-223ENST00000533079 PLEKHO1Q53GL0 409 aaPredicted RBP17.16■□□□□ 0.34
CAPN1-223ENST00000533079 TNS4Q8IZW8 715 aa17.16■□□□□ 0.34
CAPN1-223ENST00000533079 NRXN2Q9P2S2 1712 aa17.16■□□□□ 0.34
CAPN1-223ENST00000533079 HTRA3P83110 453 aa17.15■□□□□ 0.34
CAPN1-223ENST00000533079 RRAGCQ9HB90 399 aa17.15■□□□□ 0.34
CAPN1-223ENST00000533079 PRELPP51888 382 aa17.14■□□□□ 0.33
CAPN1-223ENST00000533079 DDR1Q08345 913 aa17.14■□□□□ 0.33
CAPN1-223ENST00000533079 FKBP8Q14318 412 aa17.14■□□□□ 0.33
CAPN1-223ENST00000533079 ZNF530Q6P9A1 599 aaPredicted RBP17.14■□□□□ 0.33
CAPN1-223ENST00000533079 POLRMTO00411 1230 aaKnown RBP17.13■□□□□ 0.33
CAPN1-223ENST00000533079 SCN11AQ9UI33 1791 aa17.12■□□□□ 0.33
CAPN1-223ENST00000533079 C1orf141Q5JVX7 400 aa17.12■□□□□ 0.33
CAPN1-223ENST00000533079 SRP68Q9UHB9 627 aaKnown RBP17.12■□□□□ 0.33
CAPN1-223ENST00000533079 PTCD1O75127 700 aaKnown RBP17.11■□□□□ 0.33
CAPN1-223ENST00000533079 LMNB1P20700 586 aa17.11■□□□□ 0.33
CAPN1-223ENST00000533079 CHRNA5P30532 468 aa17.11■□□□□ 0.33
CAPN1-223ENST00000533079 MTHFSP49914 203 aa17.11■□□□□ 0.33
CAPN1-223ENST00000533079 MRC1P22897 1456 aa17.11■□□□□ 0.33
CAPN1-223ENST00000533079 VEGFAP15692 232 aaPredicted RBP17.1■□□□□ 0.33
CAPN1-223ENST00000533079 TM4SF1P30408 202 aa17.1■□□□□ 0.33
CAPN1-223ENST00000533079 GLTPD2A6NH11 291 aa17.09■□□□□ 0.33
CAPN1-223ENST00000533079 ZPR1O75312 459 aa17.09■□□□□ 0.33
CAPN1-223ENST00000533079 AFDNP55196 1824 aaKnown RBP17.09■□□□□ 0.33
CAPN1-223ENST00000533079 CAPN15O75808 1086 aa17.08■□□□□ 0.32
CAPN1-223ENST00000533079 INTS5Q6P9B9 1019 aaKnown RBP17.08■□□□□ 0.32
CAPN1-223ENST00000533079 COL15A1P39059 1388 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms