RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 ATG3Q9NT62 314 aa32.81■■■□□ 2.84
USP48-214ENST00000532737 HTATSF1O43719 755 aaKnown RBP32.8■■■□□ 2.84
USP48-214ENST00000532737 TMPOP42166 694 aaKnown RBP32.79■■■□□ 2.84
USP48-214ENST00000532737 DCTN1Q14203 1278 aa32.79■■■□□ 2.84
USP48-214ENST00000532737 MCM10Q7L590 875 aa32.79■■■□□ 2.84
USP48-214ENST00000532737 RTF1Q92541 710 aaKnown RBP32.79■■■□□ 2.84
USP48-214ENST00000532737 SMARCC1Q92922 1105 aaPredicted RBP32.79■■■□□ 2.84
USP48-214ENST00000532737 PALLDQ8WX93 1383 aa32.79■■■□□ 2.84
USP48-214ENST00000532737 CASZ1Q86V15 1759 aa32.78■■■□□ 2.84
USP48-214ENST00000532737 CEMIPQ8WUJ3 1361 aa32.78■■■□□ 2.84
USP48-214ENST00000532737 MRC1P22897 1456 aa32.78■■■□□ 2.84
USP48-214ENST00000532737 RRP7AQ9Y3A4 280 aaKnown RBP32.77■■■□□ 2.84
USP48-214ENST00000532737 RIPK4P57078 832 aa32.76■■■□□ 2.83
USP48-214ENST00000532737 LRRC4BQ9NT99 713 aa32.76■■■□□ 2.83
USP48-214ENST00000532737 KCNQ4P56696 695 aa32.75■■■□□ 2.83
USP48-214ENST00000532737 TEFQ10587 303 aa32.75■■■□□ 2.83
USP48-214ENST00000532737 SLC27A3Q5K4L6 730 aa32.74■■■□□ 2.83
USP48-214ENST00000532737 MIER1Q8N108 512 aa32.74■■■□□ 2.83
USP48-214ENST00000532737 CCER2I3L3R5 266 aa32.73■■■□□ 2.83
USP48-214ENST00000532737 NEUROD2Q15784 382 aa32.72■■■□□ 2.83
USP48-214ENST00000532737 ANO8Q9HCE9 1232 aaPredicted RBP32.72■■■□□ 2.83
USP48-214ENST00000532737 CCNL1Q9UK58 526 aaPredicted RBP32.72■■■□□ 2.83
USP48-214ENST00000532737 APAF1O14727 1248 aa32.71■■■□□ 2.83
USP48-214ENST00000532737 FAM9BQ8IZU0 186 aa32.71■■■□□ 2.83
USP48-214ENST00000532737 LY75O60449 1722 aa32.71■■■□□ 2.83
USP48-214ENST00000532737 SLC39A6Q13433 755 aa32.7■■■□□ 2.83
USP48-214ENST00000532737 THUMPD2Q9BTF0 503 aaKnown RBP32.7■■■□□ 2.83
USP48-214ENST00000532737 VIRMAQ69YN4 1812 aaKnown RBP32.7■■■□□ 2.82
USP48-214ENST00000532737 DLG5Q8TDM6 1919 aa32.69■■■□□ 2.82
USP48-214ENST00000532737 LOC102724428A0A0B4J2F2 783 aa32.69■■■□□ 2.82
USP48-214ENST00000532737 SIK1P57059 783 aa32.69■■■□□ 2.82
USP48-214ENST00000532737 SPON1Q9HCB6 807 aa32.69■■■□□ 2.82
USP48-214ENST00000532737 SLC4A9Q96Q91 983 aa32.66■■■□□ 2.82
USP48-214ENST00000532737 RBM42Q9BTD8 480 aaKnown RBP32.66■■■□□ 2.82
USP48-214ENST00000532737 TRIM35Q9UPQ4 493 aa32.66■■■□□ 2.82
USP48-214ENST00000532737 PTCD1O75127 700 aaKnown RBP32.65■■■□□ 2.82
USP48-214ENST00000532737 LMOD3Q0VAK6 560 aa32.64■■■□□ 2.82
USP48-214ENST00000532737 TAF7Q15545 349 aaPredicted RBP32.63■■■□□ 2.81
USP48-214ENST00000532737 SENP3-EIF4A1A0A087X0R7 540 aa32.62■■■□□ 2.81
USP48-214ENST00000532737 BTBD11A6QL63 1104 aa32.62■■■□□ 2.81
USP48-214ENST00000532737 ATP6V1AP38606 617 aa32.62■■■□□ 2.81
USP48-214ENST00000532737 ITPK1Q13572 414 aa32.62■■■□□ 2.81
USP48-214ENST00000532737 SIPA1L3O60292 1781 aaPredicted RBP32.62■■■□□ 2.81
USP48-214ENST00000532737 KCNQ3O43525 872 aa32.6■■■□□ 2.81
USP48-214ENST00000532737 ZNF790Q6PG37 636 aa32.6■■■□□ 2.81
USP48-214ENST00000532737 PDGFDQ9GZP0 370 aaPredicted RBP32.6■■■□□ 2.81
USP48-214ENST00000532737 PAPPAQ13219 1627 aa32.59■■■□□ 2.81
USP48-214ENST00000532737 ZNF827Q17R98 1081 aa32.59■■■□□ 2.81
USP48-214ENST00000532737 STK32BQ9NY57 414 aa32.59■■■□□ 2.81
USP48-214ENST00000532737 MIS18AQ9NYP9 233 aa32.59■■■□□ 2.81
USP48-214ENST00000532737 SLC15A2Q16348 729 aa32.58■■■□□ 2.81
USP48-214ENST00000532737 TTC5Q8N0Z6 440 aa32.58■■■□□ 2.81
USP48-214ENST00000532737 AKT1S1Q96B36 256 aa32.58■■■□□ 2.81
USP48-214ENST00000532737 PPP1R1BQ9UD71 204 aaPredicted RBP32.58■■■□□ 2.81
USP48-214ENST00000532737 KCPQ6ZWJ8 1503 aa32.57■■■□□ 2.8
USP48-214ENST00000532737 LINC00116Q8NCU8 138 aa32.57■■■□□ 2.8
USP48-214ENST00000532737 ZNF496Q96IT1 587 aaPredicted RBP32.56■■■□□ 2.8
USP48-214ENST00000532737 HMGB2P26583 209 aaKnown RBP32.51■■■□□ 2.79
USP48-214ENST00000532737 DNAJC10Q8IXB1 793 aa32.51■■■□□ 2.79
USP48-214ENST00000532737 C5P01031 1676 aa32.5■■■□□ 2.79
USP48-214ENST00000532737 ZNF831Q5JPB2 1677 aa32.5■■■□□ 2.79
USP48-214ENST00000532737 FMNL2Q96PY5 1086 aa32.5■■■□□ 2.79
USP48-214ENST00000532737 UBR2Q8IWV8 1755 aa32.5■■■□□ 2.79
USP48-214ENST00000532737 VSIG10Q8N0Z9 540 aa32.49■■■□□ 2.79
USP48-214ENST00000532737 TAF1LQ8IZX4 1826 aa32.49■■■□□ 2.79
USP48-214ENST00000532737 HEG1Q9ULI3 1381 aa32.48■■■□□ 2.79
USP48-214ENST00000532737 ZBTB7AO95365 584 aa32.48■■■□□ 2.79
USP48-214ENST00000532737 CCDC27Q2M243 656 aa32.48■■■□□ 2.79
USP48-214ENST00000532737 TFCP2L1Q9NZI6 479 aa32.48■■■□□ 2.79
USP48-214ENST00000532737 PTGER2P43116 358 aa32.47■■■□□ 2.79
USP48-214ENST00000532737 NCBP3Q53F19 620 aaKnown RBP32.47■■■□□ 2.79
USP48-214ENST00000532737 SALL2Q9Y467 1007 aaPredicted RBP32.47■■■□□ 2.79
USP48-214ENST00000532737 C4BP0C0L5 1744 aa32.46■■■□□ 2.79
USP48-214ENST00000532737 AK7Q96M32 723 aa32.46■■■□□ 2.79
USP48-214ENST00000532737 BABAM1Q9NWV8 329 aa32.46■■■□□ 2.79
USP48-214ENST00000532737 TSPYL4Q9UJ04 414 aa32.46■■■□□ 2.79
USP48-214ENST00000532737 CHL1O00533 1208 aa32.45■■■□□ 2.79
USP48-214ENST00000532737 WWC1Q8IX03 1113 aa32.45■■■□□ 2.79
USP48-214ENST00000532737 LAS1LQ9Y4W2 734 aaKnown RBP32.45■■■□□ 2.79
USP48-214ENST00000532737 TJP1Q07157 1748 aa32.45■■■□□ 2.78
USP48-214ENST00000532737 CYP19A1P11511 503 aaPredicted RBP32.44■■■□□ 2.78
USP48-214ENST00000532737 RC3H1Q5TC82 1133 aaKnown RBP32.44■■■□□ 2.78
USP48-214ENST00000532737 AMIGO3Q86WK7 504 aa32.44■■■□□ 2.78
USP48-214ENST00000532737 EIF4A1P60842 406 aaKnown RBP32.43■■■□□ 2.78
USP48-214ENST00000532737 CNTNAP4Q9C0A0 1308 aa32.43■■■□□ 2.78
USP48-214ENST00000532737 CICQ96RK0 1608 aaPredicted RBP32.42■■■□□ 2.78
USP48-214ENST00000532737 CRKLP46109 303 aaKnown RBP32.42■■■□□ 2.78
USP48-214ENST00000532737 SMIM5Q71RC9 77 aa32.42■■■□□ 2.78
USP48-214ENST00000532737 PNPLA7Q6ZV29 1317 aa32.42■■■□□ 2.78
USP48-214ENST00000532737 KDM3BQ7LBC6 1761 aa32.42■■■□□ 2.78
USP48-214ENST00000532737 QSER1Q2KHR3 1735 aa32.41■■■□□ 2.78
USP48-214ENST00000532737 PRAMEF22A3QJZ6 481 aa32.41■■■□□ 2.78
USP48-214ENST00000532737 GNPATO15228 680 aa32.41■■■□□ 2.78
USP48-214ENST00000532737 CALD1Q05682 793 aaKnown RBP32.41■■■□□ 2.78
USP48-214ENST00000532737 INTS5Q6P9B9 1019 aaKnown RBP32.41■■■□□ 2.78
USP48-214ENST00000532737 CFAP44Q96MT7 982 aa32.41■■■□□ 2.78
USP48-214ENST00000532737 ATF5Q9Y2D1 282 aaPredicted RBP32.41■■■□□ 2.78
USP48-214ENST00000532737 COL5A3P25940 1745 aaPredicted RBP32.4■■■□□ 2.78
USP48-214ENST00000532737 SNRPA1P09661 255 aaKnown RBP32.4■■■□□ 2.78
USP48-214ENST00000532737 ZNF853P0CG23 659 aa32.4■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms