RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 DCAF5Q96JK2 942 aa22.95■■□□□ 1.26
CPSF1-207ENST00000531727 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.94■■□□□ 1.26
CPSF1-207ENST00000531727 PHF14O94880 888 aa22.94■■□□□ 1.26
CPSF1-207ENST00000531727 SSFA2P28290 1259 aa22.94■■□□□ 1.26
CPSF1-207ENST00000531727 ATP6V1AP38606 617 aa22.94■■□□□ 1.26
CPSF1-207ENST00000531727 KDM6AO15550 1401 aaPredicted RBP22.93■■□□□ 1.26
CPSF1-207ENST00000531727 KDRP35968 1356 aa22.93■■□□□ 1.26
CPSF1-207ENST00000531727 IL13P35225 146 aa22.93■■□□□ 1.26
CPSF1-207ENST00000531727 SULT6B1Q6IMI4 303 aa22.92■■□□□ 1.26
CPSF1-207ENST00000531727 SMIM5Q71RC9 77 aa22.92■■□□□ 1.26
CPSF1-207ENST00000531727 PELP1Q8IZL8 1130 aaKnown RBP22.92■■□□□ 1.26
CPSF1-207ENST00000531727 ZNF784Q8NCA9 323 aaPredicted RBP22.91■■□□□ 1.26
CPSF1-207ENST00000531727 GNPATO15228 680 aa22.9■■□□□ 1.26
CPSF1-207ENST00000531727 PER1O15534 1290 aaPredicted RBP22.89■■□□□ 1.25
CPSF1-207ENST00000531727 C1orf141Q5JVX7 400 aa22.89■■□□□ 1.25
CPSF1-207ENST00000531727 CD2APQ9Y5K6 639 aa22.89■■□□□ 1.25
CPSF1-207ENST00000531727 COL5A3P25940 1745 aaPredicted RBP22.88■■□□□ 1.25
CPSF1-207ENST00000531727 MTHFSP49914 203 aa22.88■■□□□ 1.25
CPSF1-207ENST00000531727 CABP4P57796 275 aa22.88■■□□□ 1.25
CPSF1-207ENST00000531727 SLC4A9Q96Q91 983 aa22.88■■□□□ 1.25
CPSF1-207ENST00000531727 RBM42Q9BTD8 480 aaKnown RBP22.87■■□□□ 1.25
CPSF1-207ENST00000531727 SCN11AQ9UI33 1791 aa22.86■■□□□ 1.25
CPSF1-207ENST00000531727 GOLGB1Q14789 3259 aaKnown RBP22.86■■□□□ 1.25
CPSF1-207ENST00000531727 YBX3P16989 372 aaKnown RBP eCLIP22.85■■□□□ 1.255e-7■■□□□ 11.8
CPSF1-207ENST00000531727 GRIN3BO60391 1043 aa22.84■■□□□ 1.25
CPSF1-207ENST00000531727 CC2D1BQ5T0F9 858 aaKnown RBP22.83■■□□□ 1.25
CPSF1-207ENST00000531727 RC3H1Q5TC82 1133 aaKnown RBP22.83■■□□□ 1.25
CPSF1-207ENST00000531727 RTCBQ9Y3I0 505 aaKnown RBP22.83■■□□□ 1.25
CPSF1-207ENST00000531727 CNTNAP4Q9C0A0 1308 aa22.82■■□□□ 1.24
CPSF1-207ENST00000531727 NPC1L1Q9UHC9 1359 aa22.82■■□□□ 1.24
CPSF1-207ENST00000531727 NFATC2IPQ8NCF5 419 aa22.82■■□□□ 1.24
CPSF1-207ENST00000531727 AKAP4Q5JQC9 854 aa22.81■■□□□ 1.24
CPSF1-207ENST00000531727 CICQ96RK0 1608 aaPredicted RBP22.81■■□□□ 1.24
CPSF1-207ENST00000531727 TRAPPC3LQ5T215 181 aa22.8■■□□□ 1.24
CPSF1-207ENST00000531727 TJP1Q07157 1748 aa22.79■■□□□ 1.24
CPSF1-207ENST00000531727 DIAPH1O60610 1272 aaKnown RBP22.79■■□□□ 1.24
CPSF1-207ENST00000531727 PTCD1O75127 700 aaKnown RBP22.79■■□□□ 1.24
CPSF1-207ENST00000531727 HMOX1P09601 288 aa22.79■■□□□ 1.24
CPSF1-207ENST00000531727 ADRA2BP18089 450 aa22.79■■□□□ 1.24
CPSF1-207ENST00000531727 VIRMAQ69YN4 1812 aaKnown RBP22.78■■□□□ 1.24
CPSF1-207ENST00000531727 RPS6KA4O75676 772 aa22.78■■□□□ 1.24
CPSF1-207ENST00000531727 C4AP0C0L4 1744 aa22.78■■□□□ 1.24
CPSF1-207ENST00000531727 MYH14Q7Z406 1995 aaKnown RBP22.78■■□□□ 1.24
CPSF1-207ENST00000531727 MMP10P09238 476 aa22.77■■□□□ 1.24
CPSF1-207ENST00000531727 ARHGEF1Q92888 912 aaKnown RBP22.77■■□□□ 1.24
CPSF1-207ENST00000531727 MRC1P22897 1456 aa22.77■■□□□ 1.24
CPSF1-207ENST00000531727 COL3A1P02461 1466 aaPredicted RBP22.76■■□□□ 1.23
CPSF1-207ENST00000531727 ADAMTS7Q9UKP4 1686 aa22.76■■□□□ 1.23
CPSF1-207ENST00000531727 KIF13BQ9NQT8 1826 aa22.75■■□□□ 1.23
CPSF1-207ENST00000531727 NLGN1Q8N2Q7 840 aa22.75■■□□□ 1.23
CPSF1-207ENST00000531727 SLC52A2Q9HAB3 445 aa22.75■■□□□ 1.23
CPSF1-207ENST00000531727 RFC4P35249 363 aa22.74■■□□□ 1.23
CPSF1-207ENST00000531727 CRKLP46109 303 aaKnown RBP22.74■■□□□ 1.23
CPSF1-207ENST00000531727 LGR6Q9HBX8 967 aa22.74■■□□□ 1.23
CPSF1-207ENST00000531727 RNMTO43148 476 aaKnown RBP22.73■■□□□ 1.23
CPSF1-207ENST00000531727 MTHFSDQ2M296 383 aaKnown RBP22.73■■□□□ 1.23
CPSF1-207ENST00000531727 GYS1P13807 737 aa22.72■■□□□ 1.23
CPSF1-207ENST00000531727 CNGB1Q14028 1251 aaPredicted RBP22.72■■□□□ 1.23
CPSF1-207ENST00000531727 KIAA1551Q9HCM1 1747 aa22.71■■□□□ 1.23
CPSF1-207ENST00000531727 KCPQ6ZWJ8 1503 aa22.69■■□□□ 1.22
CPSF1-207ENST00000531727 PXDNLA1KZ92 1463 aa22.69■■□□□ 1.22
CPSF1-207ENST00000531727 C10orf71Q711Q0 1435 aa22.69■■□□□ 1.22
CPSF1-207ENST00000531727 WWC3Q9ULE0 1092 aa22.69■■□□□ 1.22
CPSF1-207ENST00000531727 U2SURPO15042 1029 aaKnown RBP22.68■■□□□ 1.22
CPSF1-207ENST00000531727 INTS5Q6P9B9 1019 aaKnown RBP22.68■■□□□ 1.22
CPSF1-207ENST00000531727 N4BP2Q86UW6 1770 aaPredicted RBP22.68■■□□□ 1.22
CPSF1-207ENST00000531727 USP42Q9H9J4 1324 aaKnown RBP22.67■■□□□ 1.22
CPSF1-207ENST00000531727 C1QTNF8P60827 252 aa22.67■■□□□ 1.22
CPSF1-207ENST00000531727 TGFB2P61812 414 aa22.67■■□□□ 1.22
CPSF1-207ENST00000531727 SLC39A6Q13433 755 aa22.67■■□□□ 1.22
CPSF1-207ENST00000531727 DNAJC10Q8IXB1 793 aa22.67■■□□□ 1.22
CPSF1-207ENST00000531727 CCDC87Q9NVE4 849 aa22.67■■□□□ 1.22
CPSF1-207ENST00000531727 PARP3Q9Y6F1 533 aa22.67■■□□□ 1.22
CPSF1-207ENST00000531727 UBR2Q8IWV8 1755 aa22.66■■□□□ 1.22
CPSF1-207ENST00000531727 GIGYF1O75420 1035 aaPredicted RBP22.66■■□□□ 1.22
CPSF1-207ENST00000531727 SRP68Q9UHB9 627 aaKnown RBP22.66■■□□□ 1.22
CPSF1-207ENST00000531727 ATP10DQ9P241 1426 aa22.65■■□□□ 1.22
CPSF1-207ENST00000531727 CYP19A1P11511 503 aaPredicted RBP22.64■■□□□ 1.21
CPSF1-207ENST00000531727 ADCY9O60503 1353 aa22.63■■□□□ 1.21
CPSF1-207ENST00000531727 FKBP8Q14318 412 aa22.63■■□□□ 1.21
CPSF1-207ENST00000531727 GAS2L2Q8NHY3 880 aa22.63■■□□□ 1.21
CPSF1-207ENST00000531727 SOS1Q07889 1333 aaPredicted RBP22.62■■□□□ 1.21
CPSF1-207ENST00000531727 A0A0G2JLW4 131 aa22.62■■□□□ 1.21
CPSF1-207ENST00000531727 VSIG10Q8N0Z9 540 aa22.62■■□□□ 1.21
CPSF1-207ENST00000531727 CFAP53Q96M91 514 aa22.62■■□□□ 1.21
CPSF1-207ENST00000531727 SIPA1L3O60292 1781 aaPredicted RBP22.62■■□□□ 1.21
CPSF1-207ENST00000531727 BRCA1P38398 1863 aaKnown RBP22.62■■□□□ 1.21
CPSF1-207ENST00000531727 GNAT3A8MTJ3 354 aa22.61■■□□□ 1.21
CPSF1-207ENST00000531727 ZPR1O75312 459 aa22.59■■□□□ 1.21
CPSF1-207ENST00000531727 DPEP1P16444 411 aa22.59■■□□□ 1.21
CPSF1-207ENST00000531727 DDR1Q08345 913 aa22.59■■□□□ 1.21
CPSF1-207ENST00000531727 TEFQ10587 303 aa22.59■■□□□ 1.21
CPSF1-207ENST00000531727 TTC5Q8N0Z6 440 aa22.59■■□□□ 1.21
CPSF1-207ENST00000531727 IL17REQ8NFR9 667 aa22.59■■□□□ 1.21
CPSF1-207ENST00000531727 USPL1Q5W0Q7 1092 aa22.58■■□□□ 1.21
CPSF1-207ENST00000531727 BCS1LQ9Y276 419 aa22.58■■□□□ 1.21
CPSF1-207ENST00000531727 ZBTB1Q9Y2K1 713 aa22.58■■□□□ 1.21
CPSF1-207ENST00000531727 COL15A1P39059 1388 aa22.58■■□□□ 1.21
CPSF1-207ENST00000531727 TM4SF1P30408 202 aa22.57■■□□□ 1.2
CPSF1-207ENST00000531727 RSPH6AQ9H0K4 717 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms