RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-222ENST00000520948 C1QTNF8P60827 252 aa24.28■■□□□ 1.48
VEGFA-222ENST00000520948 SMIM5Q71RC9 77 aa24.28■■□□□ 1.48
VEGFA-222ENST00000520948 AMIGO3Q86WK7 504 aa24.28■■□□□ 1.48
VEGFA-222ENST00000520948 SMARCC1Q92922 1105 aaPredicted RBP24.28■■□□□ 1.48
VEGFA-222ENST00000520948 AK7Q96M32 723 aa24.28■■□□□ 1.48
VEGFA-222ENST00000520948 SENP3-EIF4A1A0A087X0R7 540 aa24.27■■□□□ 1.48
VEGFA-222ENST00000520948 PHF14O94880 888 aa24.27■■□□□ 1.48
VEGFA-222ENST00000520948 SPG7Q9UQ90 795 aa24.27■■□□□ 1.48
VEGFA-222ENST00000520948 NUDCQ9Y266 331 aa24.27■■□□□ 1.48
VEGFA-222ENST00000520948 FLAD1Q8NFF5 587 aa24.26■■□□□ 1.47
VEGFA-222ENST00000520948 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.26■■□□□ 1.471e-31■□□□□ 9.2
VEGFA-222ENST00000520948 U2SURPO15042 1029 aaKnown RBP24.25■■□□□ 1.47
VEGFA-222ENST00000520948 NKX1-1Q15270 411 aaPredicted RBP24.25■■□□□ 1.47
VEGFA-222ENST00000520948 HMOX1P09601 288 aa24.24■■□□□ 1.47
VEGFA-222ENST00000520948 GRIN3BO60391 1043 aa24.23■■□□□ 1.47
VEGFA-222ENST00000520948 GIGYF1O75420 1035 aaPredicted RBP24.22■■□□□ 1.47
VEGFA-222ENST00000520948 HMGB2P26583 209 aaKnown RBP24.22■■□□□ 1.47
VEGFA-222ENST00000520948 LINC00116Q8NCU8 138 aa24.22■■□□□ 1.47
VEGFA-222ENST00000520948 TMOD3Q9NYL9 352 aa24.22■■□□□ 1.47
VEGFA-222ENST00000520948 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.21■■□□□ 1.47
VEGFA-222ENST00000520948 LOC102724428A0A0B4J2F2 783 aa24.21■■□□□ 1.47
VEGFA-222ENST00000520948 SIK1P57059 783 aa24.21■■□□□ 1.47
VEGFA-222ENST00000520948 CCDC184Q52MB2 194 aa24.21■■□□□ 1.47
VEGFA-222ENST00000520948 RSPH6AQ9H0K4 717 aa24.21■■□□□ 1.47
VEGFA-222ENST00000520948 CD2APQ9Y5K6 639 aa24.21■■□□□ 1.47
VEGFA-222ENST00000520948 FCHSD2O94868 740 aa24.2■■□□□ 1.46
VEGFA-222ENST00000520948 U2AF1L5P0DN76 240 aaPredicted RBP24.2■■□□□ 1.46
VEGFA-222ENST00000520948 PHKG2P15735 406 aa24.2■■□□□ 1.46
VEGFA-222ENST00000520948 U2AF1Q01081 240 aaKnown RBP eCLIP24.2■■□□□ 1.46
VEGFA-222ENST00000520948 ASAP1Q9ULH1 1129 aa24.2■■□□□ 1.46
VEGFA-222ENST00000520948 WWC3Q9ULE0 1092 aa24.19■■□□□ 1.46
VEGFA-222ENST00000520948 ITPK1Q13572 414 aa24.18■■□□□ 1.46
VEGFA-222ENST00000520948 AMOTQ4VCS5 1084 aa24.18■■□□□ 1.46
VEGFA-222ENST00000520948 PLEKHO1Q53GL0 409 aaPredicted RBP24.18■■□□□ 1.46
VEGFA-222ENST00000520948 IFNL2Q8IZJ0 200 aa24.18■■□□□ 1.46
VEGFA-222ENST00000520948 DIEXFQ68CQ4 756 aaKnown RBP24.17■■□□□ 1.46
VEGFA-222ENST00000520948 GNPATO15228 680 aa24.16■■□□□ 1.46
VEGFA-222ENST00000520948 SSFA2P28290 1259 aa24.16■■□□□ 1.46
VEGFA-222ENST00000520948 ATP6V1AP38606 617 aa24.16■■□□□ 1.46
VEGFA-222ENST00000520948 ATP10DQ9P241 1426 aa24.15■■□□□ 1.46
VEGFA-222ENST00000520948 PRKAR2BP31323 418 aa24.14■■□□□ 1.45
VEGFA-222ENST00000520948 ATG3Q9NT62 314 aa24.14■■□□□ 1.45
VEGFA-222ENST00000520948 PHACTR3Q96KR7 559 aa24.13■■□□□ 1.45
VEGFA-222ENST00000520948 PLEKHF1Q96S99 279 aa24.13■■□□□ 1.45
VEGFA-222ENST00000520948 MTHFSDQ2M296 383 aaKnown RBP24.12■■□□□ 1.45
VEGFA-222ENST00000520948 ZNF530Q6P9A1 599 aaPredicted RBP24.1■■□□□ 1.45
VEGFA-222ENST00000520948 ADAMTS8Q9UP79 889 aa24.1■■□□□ 1.45
VEGFA-222ENST00000520948 PNISRQ8TF01 805 aaKnown RBP24.09■■□□□ 1.45
VEGFA-222ENST00000520948 COL5A3P25940 1745 aaPredicted RBP24.09■■□□□ 1.45
VEGFA-222ENST00000520948 RBM42Q9BTD8 480 aaKnown RBP24.08■■□□□ 1.45
VEGFA-222ENST00000520948 PNNQ9H307 717 aaKnown RBP24.08■■□□□ 1.45
VEGFA-222ENST00000520948 MRS2Q9HD23 443 aa24.08■■□□□ 1.45
VEGFA-222ENST00000520948 WDR43Q15061 677 aaKnown RBP eCLIP24.07■■□□□ 1.448e-10■□□□□ 9.2
VEGFA-222ENST00000520948 AKAP4Q5JQC9 854 aa24.07■■□□□ 1.44
VEGFA-222ENST00000520948 ZNF526Q8TF50 670 aaPredicted RBP24.07■■□□□ 1.44
VEGFA-222ENST00000520948 SLC4A9Q96Q91 983 aa24.07■■□□□ 1.44
VEGFA-222ENST00000520948 ZNF831Q5JPB2 1677 aa24.07■■□□□ 1.44
VEGFA-222ENST00000520948 KDM6AO15550 1401 aaPredicted RBP24.07■■□□□ 1.44
VEGFA-222ENST00000520948 ADCY9O60503 1353 aa24.06■■□□□ 1.44
VEGFA-222ENST00000520948 MMP10P09238 476 aa24.06■■□□□ 1.44
VEGFA-222ENST00000520948 CICQ96RK0 1608 aaPredicted RBP24.06■■□□□ 1.44
VEGFA-222ENST00000520948 GAS2L2Q8NHY3 880 aa24.05■■□□□ 1.44
VEGFA-222ENST00000520948 N4BP2Q86UW6 1770 aaPredicted RBP24.05■■□□□ 1.44
VEGFA-222ENST00000520948 KIF13BQ9NQT8 1826 aa24.05■■□□□ 1.44
VEGFA-222ENST00000520948 KIAA1551Q9HCM1 1747 aa24.04■■□□□ 1.44
VEGFA-222ENST00000520948 ERVV-2B6SEH9 535 aa24.04■■□□□ 1.44
VEGFA-222ENST00000520948 HSP90AB1P08238 724 aaKnown RBP24.04■■□□□ 1.44
VEGFA-222ENST00000520948 C1orf141Q5JVX7 400 aa24.04■■□□□ 1.44
VEGFA-222ENST00000520948 DCAF5Q96JK2 942 aa24.04■■□□□ 1.44
VEGFA-222ENST00000520948 GPBP1L1Q9HC44 474 aaPredicted RBP24.04■■□□□ 1.44
VEGFA-222ENST00000520948 RTCBQ9Y3I0 505 aaKnown RBP24.04■■□□□ 1.44
VEGFA-222ENST00000520948 ADAMTS7Q9UKP4 1686 aa24.03■■□□□ 1.44
VEGFA-222ENST00000520948 CCER2I3L3R5 266 aa24.03■■□□□ 1.44
VEGFA-222ENST00000520948 C4AP0C0L4 1744 aa24.03■■□□□ 1.44
VEGFA-222ENST00000520948 SCN11AQ9UI33 1791 aa24.02■■□□□ 1.44
VEGFA-222ENST00000520948 CABP4P57796 275 aa24.02■■□□□ 1.44
VEGFA-222ENST00000520948 TRAPPC3LQ5T215 181 aa24.02■■□□□ 1.44
VEGFA-222ENST00000520948 PXDNLA1KZ92 1463 aa24.01■■□□□ 1.43
VEGFA-222ENST00000520948 MIER1Q8N108 512 aa24.01■■□□□ 1.43
VEGFA-222ENST00000520948 RUNDC1Q96C34 613 aa24.01■■□□□ 1.43
VEGFA-222ENST00000520948 MYH14Q7Z406 1995 aaKnown RBP24.01■■□□□ 1.43
VEGFA-222ENST00000520948 GNAT3A8MTJ3 354 aa24■■□□□ 1.43
VEGFA-222ENST00000520948 LGR6Q9HBX8 967 aa24■■□□□ 1.43
VEGFA-222ENST00000520948 VIRMAQ69YN4 1812 aaKnown RBP24■■□□□ 1.43
VEGFA-222ENST00000520948 RNMTO43148 476 aaKnown RBP23.99■■□□□ 1.43
VEGFA-222ENST00000520948 ARHGEF1Q92888 912 aaKnown RBP23.99■■□□□ 1.43
VEGFA-222ENST00000520948 DLG5Q8TDM6 1919 aa23.98■■□□□ 1.43
VEGFA-222ENST00000520948 PTCD1O75127 700 aaKnown RBP23.98■■□□□ 1.43
VEGFA-222ENST00000520948 NEFMP07197 916 aa23.98■■□□□ 1.43
VEGFA-222ENST00000520948 CCDC146Q8IYE0 955 aa23.98■■□□□ 1.43
VEGFA-222ENST00000520948 CNTNAP4Q9C0A0 1308 aa23.98■■□□□ 1.43
VEGFA-222ENST00000520948 TJP1Q07157 1748 aa23.97■■□□□ 1.43
VEGFA-222ENST00000520948 NFE2L2Q16236 605 aa23.97■■□□□ 1.43
VEGFA-222ENST00000520948 RC3H1Q5TC82 1133 aaKnown RBP23.97■■□□□ 1.43
VEGFA-222ENST00000520948 C10orf71Q711Q0 1435 aa23.97■■□□□ 1.43
VEGFA-222ENST00000520948 NLGN1Q8N2Q7 840 aa23.97■■□□□ 1.43
VEGFA-222ENST00000520948 IL17REQ8NFR9 667 aa23.97■■□□□ 1.43
VEGFA-222ENST00000520948 MAPK8IP3Q9UPT6 1336 aa23.96■■□□□ 1.43
VEGFA-222ENST00000520948 HTATSF1O43719 755 aaKnown RBP23.96■■□□□ 1.43
VEGFA-222ENST00000520948 RFC4P35249 363 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms