RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 CC2D1BQ5T0F9 858 aaKnown RBP23.72■■□□□ 1.39
DDX41-217ENST00000515562 KLHL34Q8N239 644 aa23.72■■□□□ 1.39
DDX41-217ENST00000515562 SSFA2P28290 1259 aa23.7■■□□□ 1.38
DDX41-217ENST00000515562 ATP6V1AP38606 617 aa23.7■■□□□ 1.38
DDX41-217ENST00000515562 LINC00116Q8NCU8 138 aa23.7■■□□□ 1.38
DDX41-217ENST00000515562 MSL1Q68DK7 614 aa23.69■■□□□ 1.38
DDX41-217ENST00000515562 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.68■■□□□ 1.38
DDX41-217ENST00000515562 PHF14O94880 888 aa23.68■■□□□ 1.38
DDX41-217ENST00000515562 CABP4P57796 275 aa23.68■■□□□ 1.38
DDX41-217ENST00000515562 ITPK1Q13572 414 aa23.68■■□□□ 1.38
DDX41-217ENST00000515562 SCN11AQ9UI33 1791 aa23.67■■□□□ 1.38
DDX41-217ENST00000515562 DIAPH1O60610 1272 aaKnown RBP23.66■■□□□ 1.38
DDX41-217ENST00000515562 AMIGO3Q86WK7 504 aa23.66■■□□□ 1.38
DDX41-217ENST00000515562 COL5A3P25940 1745 aaPredicted RBP23.66■■□□□ 1.38
DDX41-217ENST00000515562 GNPATO15228 680 aa23.65■■□□□ 1.38
DDX41-217ENST00000515562 UTRNP46939 3433 aa23.65■■□□□ 1.38
DDX41-217ENST00000515562 CHD4Q14839 1912 aa23.65■■□□□ 1.38
DDX41-217ENST00000515562 GPR162Q16538 588 aa23.64■■□□□ 1.37
DDX41-217ENST00000515562 AKAP4Q5JQC9 854 aa23.64■■□□□ 1.37
DDX41-217ENST00000515562 RBM42Q9BTD8 480 aaKnown RBP23.64■■□□□ 1.37
DDX41-217ENST00000515562 COL3A1P02461 1466 aaPredicted RBP23.63■■□□□ 1.37
DDX41-217ENST00000515562 NLGN2Q8NFZ4 835 aa23.63■■□□□ 1.37
DDX41-217ENST00000515562 CICQ96RK0 1608 aaPredicted RBP23.62■■□□□ 1.37
DDX41-217ENST00000515562 HMOX1P09601 288 aa23.62■■□□□ 1.37
DDX41-217ENST00000515562 MRC1P22897 1456 aa23.62■■□□□ 1.37
DDX41-217ENST00000515562 SLC4A9Q96Q91 983 aa23.61■■□□□ 1.37
DDX41-217ENST00000515562 CNTNAP4Q9C0A0 1308 aa23.6■■□□□ 1.37
DDX41-217ENST00000515562 NFATC2IPQ8NCF5 419 aa23.6■■□□□ 1.37
DDX41-217ENST00000515562 CD2APQ9Y5K6 639 aa23.6■■□□□ 1.37
DDX41-217ENST00000515562 RC3H1Q5TC82 1133 aaKnown RBP23.59■■□□□ 1.37
DDX41-217ENST00000515562 SMIM5Q71RC9 77 aa23.59■■□□□ 1.37
DDX41-217ENST00000515562 RTCBQ9Y3I0 505 aaKnown RBP23.59■■□□□ 1.37
DDX41-217ENST00000515562 ADAMTS7Q9UKP4 1686 aa23.58■■□□□ 1.37
DDX41-217ENST00000515562 ADRA2BP18089 450 aa23.58■■□□□ 1.37
DDX41-217ENST00000515562 CNGB1Q14028 1251 aaPredicted RBP23.58■■□□□ 1.37
DDX41-217ENST00000515562 PELP1Q8IZL8 1130 aaKnown RBP23.58■■□□□ 1.37
DDX41-217ENST00000515562 VIRMAQ69YN4 1812 aaKnown RBP23.58■■□□□ 1.37
DDX41-217ENST00000515562 TJP1Q07157 1748 aa23.56■■□□□ 1.36
DDX41-217ENST00000515562 PTCD1O75127 700 aaKnown RBP23.56■■□□□ 1.36
DDX41-217ENST00000515562 SLC52A2Q9HAB3 445 aa23.56■■□□□ 1.36
DDX41-217ENST00000515562 TRAPPC3LQ5T215 181 aa23.55■■□□□ 1.36
DDX41-217ENST00000515562 MTHFSDQ2M296 383 aaKnown RBP23.54■■□□□ 1.36
DDX41-217ENST00000515562 C4AP0C0L4 1744 aa23.53■■□□□ 1.36
DDX41-217ENST00000515562 GOLGB1Q14789 3259 aaKnown RBP23.53■■□□□ 1.36
DDX41-217ENST00000515562 U2SURPO15042 1029 aaKnown RBP23.53■■□□□ 1.36
DDX41-217ENST00000515562 RNMTO43148 476 aaKnown RBP23.53■■□□□ 1.36
DDX41-217ENST00000515562 CFAP53Q96M91 514 aa23.53■■□□□ 1.36
DDX41-217ENST00000515562 MYH14Q7Z406 1995 aaKnown RBP23.52■■□□□ 1.36
DDX41-217ENST00000515562 GRIN3BO60391 1043 aa23.52■■□□□ 1.36
DDX41-217ENST00000515562 RPS6KA4O75676 772 aa23.52■■□□□ 1.36
DDX41-217ENST00000515562 LGR6Q9HBX8 967 aa23.52■■□□□ 1.36
DDX41-217ENST00000515562 ZNF784Q8NCA9 323 aaPredicted RBP23.51■■□□□ 1.35
DDX41-217ENST00000515562 MMP10P09238 476 aa23.5■■□□□ 1.35
DDX41-217ENST00000515562 YBX3P16989 372 aaKnown RBP eCLIP23.5■■□□□ 1.359e-6■□□□□ 10.4
DDX41-217ENST00000515562 RFC4P35249 363 aa23.5■■□□□ 1.35
DDX41-217ENST00000515562 CRKLP46109 303 aaKnown RBP23.5■■□□□ 1.35
DDX41-217ENST00000515562 NLGN1Q8N2Q7 840 aa23.5■■□□□ 1.35
DDX41-217ENST00000515562 ARHGEF1Q92888 912 aaKnown RBP23.5■■□□□ 1.35
DDX41-217ENST00000515562 GAS2L2Q8NHY3 880 aa23.49■■□□□ 1.35
DDX41-217ENST00000515562 KCPQ6ZWJ8 1503 aa23.49■■□□□ 1.35
DDX41-217ENST00000515562 UBR2Q8IWV8 1755 aa23.47■■□□□ 1.35
DDX41-217ENST00000515562 KIF13BQ9NQT8 1826 aa23.47■■□□□ 1.35
DDX41-217ENST00000515562 GYS1P13807 737 aa23.45■■□□□ 1.34
DDX41-217ENST00000515562 PPP2R1AP30153 589 aa23.45■■□□□ 1.34
DDX41-217ENST00000515562 NUDCQ9Y266 331 aa23.45■■□□□ 1.34
DDX41-217ENST00000515562 GNAT3A8MTJ3 354 aa23.44■■□□□ 1.34
DDX41-217ENST00000515562 SLC39A6Q13433 755 aa23.44■■□□□ 1.34
DDX41-217ENST00000515562 DNAJC10Q8IXB1 793 aa23.44■■□□□ 1.34
DDX41-217ENST00000515562 C10orf71Q711Q0 1435 aa23.43■■□□□ 1.34
DDX41-217ENST00000515562 USP42Q9H9J4 1324 aaKnown RBP23.43■■□□□ 1.34
DDX41-217ENST00000515562 VSIG10Q8N0Z9 540 aa23.43■■□□□ 1.34
DDX41-217ENST00000515562 CCDC87Q9NVE4 849 aa23.43■■□□□ 1.34
DDX41-217ENST00000515562 SIPA1L3O60292 1781 aaPredicted RBP23.42■■□□□ 1.34
DDX41-217ENST00000515562 PRKAR2BP31323 418 aa23.42■■□□□ 1.34
DDX41-217ENST00000515562 TEFQ10587 303 aa23.42■■□□□ 1.34
DDX41-217ENST00000515562 INTS5Q6P9B9 1019 aaKnown RBP23.42■■□□□ 1.34
DDX41-217ENST00000515562 RSPH6AQ9H0K4 717 aa23.42■■□□□ 1.34
DDX41-217ENST00000515562 TTC5Q8N0Z6 440 aa23.41■■□□□ 1.34
DDX41-217ENST00000515562 PXDNLA1KZ92 1463 aa23.41■■□□□ 1.34
DDX41-217ENST00000515562 KIAA1551Q9HCM1 1747 aa23.4■■□□□ 1.34
DDX41-217ENST00000515562 PARP3Q9Y6F1 533 aa23.4■■□□□ 1.34
DDX41-217ENST00000515562 SOS1Q07889 1333 aaPredicted RBP23.39■■□□□ 1.34
DDX41-217ENST00000515562 CYP19A1P11511 503 aaPredicted RBP23.39■■□□□ 1.33
DDX41-217ENST00000515562 CEMIPQ8WUJ3 1361 aa23.39■■□□□ 1.33
DDX41-217ENST00000515562 U2AF1L5P0DN76 240 aaPredicted RBP23.38■■□□□ 1.33
DDX41-217ENST00000515562 TGFB2P61812 414 aa23.38■■□□□ 1.33
DDX41-217ENST00000515562 U2AF1Q01081 240 aaKnown RBP eCLIP23.38■■□□□ 1.333e-7■■■■□ 19.9
DDX41-217ENST00000515562 IL17REQ8NFR9 667 aa23.38■■□□□ 1.33
DDX41-217ENST00000515562 SRP68Q9UHB9 627 aaKnown RBP23.38■■□□□ 1.33
DDX41-217ENST00000515562 PHACTR3Q96KR7 559 aa23.37■■□□□ 1.33
DDX41-217ENST00000515562 COL15A1P39059 1388 aa23.37■■□□□ 1.33
DDX41-217ENST00000515562 ZPR1O75312 459 aa23.36■■□□□ 1.33
DDX41-217ENST00000515562 ZNF790Q6PG37 636 aa23.36■■□□□ 1.33
DDX41-217ENST00000515562 N4BP2Q86UW6 1770 aaPredicted RBP23.36■■□□□ 1.33
DDX41-217ENST00000515562 FCHSD2O94868 740 aa23.35■■□□□ 1.33
DDX41-217ENST00000515562 FKBP8Q14318 412 aa23.35■■□□□ 1.33
DDX41-217ENST00000515562 WWC3Q9ULE0 1092 aa23.35■■□□□ 1.33
DDX41-217ENST00000515562 ZBTB1Q9Y2K1 713 aa23.35■■□□□ 1.33
DDX41-217ENST00000515562 STARD3NLO95772 234 aa23.34■■□□□ 1.33
DDX41-217ENST00000515562 HEG1Q9ULI3 1381 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms