RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 FCHSD2O94868 740 aa16.28■□□□□ 0.2
RNF4-216ENST00000511859 ATP6V1AP38606 617 aa16.28■□□□□ 0.2
RNF4-216ENST00000511859 TMF1P82094 1093 aa16.28■□□□□ 0.2
RNF4-216ENST00000511859 HTRA3P83110 453 aa16.28■□□□□ 0.2
RNF4-216ENST00000511859 HSP90AB2PQ58FF8 381 aa16.28■□□□□ 0.2
RNF4-216ENST00000511859 TRAPPC3LQ5T215 181 aa16.28■□□□□ 0.2
RNF4-216ENST00000511859 C9orf131Q5VYM1 1079 aa16.27■□□□□ 0.2
RNF4-216ENST00000511859 CCDC87Q9NVE4 849 aa16.27■□□□□ 0.2
RNF4-216ENST00000511859 KIAA1551Q9HCM1 1747 aa16.27■□□□□ 0.2
RNF4-216ENST00000511859 KIF24Q5T7B8 1368 aa16.27■□□□□ 0.19
RNF4-216ENST00000511859 DPEP1P16444 411 aa16.26■□□□□ 0.19
RNF4-216ENST00000511859 ITPK1Q13572 414 aa16.26■□□□□ 0.19
RNF4-216ENST00000511859 TMOD3Q9NYL9 352 aa16.26■□□□□ 0.19
RNF4-216ENST00000511859 SPG7Q9UQ90 795 aa16.26■□□□□ 0.19
RNF4-216ENST00000511859 RTCBQ9Y3I0 505 aaKnown RBP16.26■□□□□ 0.19
RNF4-216ENST00000511859 ASAP1Q9ULH1 1129 aa16.26■□□□□ 0.19
RNF4-216ENST00000511859 BRCA1P38398 1863 aaKnown RBP16.25■□□□□ 0.19
RNF4-216ENST00000511859 ARFGEF1Q9Y6D6 1849 aa16.25■□□□□ 0.19
RNF4-216ENST00000511859 GGNBP2Q9H3C7 697 aa16.25■□□□□ 0.19
RNF4-216ENST00000511859 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.25■□□□□ 0.195e-8■□□□□ 9.7
RNF4-216ENST00000511859 C10orf71Q711Q0 1435 aa16.24■□□□□ 0.19
RNF4-216ENST00000511859 FLT4P35916 1363 aa16.24■□□□□ 0.19
RNF4-216ENST00000511859 ADRA2BP18089 450 aa16.24■□□□□ 0.19
RNF4-216ENST00000511859 PKD1L3Q7Z443 1732 aa16.24■□□□□ 0.19
RNF4-216ENST00000511859 RRAGCQ9HB90 399 aa16.24■□□□□ 0.19
RNF4-216ENST00000511859 PIM2Q9P1W9 311 aa16.24■□□□□ 0.19
RNF4-216ENST00000511859 PARP3Q9Y6F1 533 aa16.24■□□□□ 0.19
RNF4-216ENST00000511859 KCNA3P22001 575 aa16.23■□□□□ 0.19
RNF4-216ENST00000511859 SMC1BQ8NDV3 1235 aa16.23■□□□□ 0.19
RNF4-216ENST00000511859 TESK2Q96S53 571 aa16.23■□□□□ 0.19
RNF4-216ENST00000511859 RC3H1Q5TC82 1133 aaKnown RBP16.22■□□□□ 0.19
RNF4-216ENST00000511859 ARHGEF1Q92888 912 aaKnown RBP16.22■□□□□ 0.19
RNF4-216ENST00000511859 ATG3Q9NT62 314 aa16.22■□□□□ 0.19
RNF4-216ENST00000511859 GYS1P13807 737 aa16.21■□□□□ 0.19
RNF4-216ENST00000511859 RFC4P35249 363 aa16.21■□□□□ 0.19
RNF4-216ENST00000511859 DALRD3Q5D0E6 543 aaKnown RBP16.21■□□□□ 0.19
RNF4-216ENST00000511859 IFNL2Q8IZJ0 200 aa16.21■□□□□ 0.19
RNF4-216ENST00000511859 DCAF5Q96JK2 942 aa16.21■□□□□ 0.19
RNF4-216ENST00000511859 SBF1O95248 1867 aa16.21■□□□□ 0.18
RNF4-216ENST00000511859 ST20-MTHFSA0A0A6YYL1 179 aa16.2■□□□□ 0.18
RNF4-216ENST00000511859 RNF181Q9P0P0 153 aa16.2■□□□□ 0.18
RNF4-216ENST00000511859 KCPQ6ZWJ8 1503 aa16.2■□□□□ 0.18
RNF4-216ENST00000511859 RPS6KA4O75676 772 aa16.19■□□□□ 0.18
RNF4-216ENST00000511859 C4AP0C0L4 1744 aa16.19■□□□□ 0.18
RNF4-216ENST00000511859 NCAPD2Q15021 1401 aa16.18■□□□□ 0.18
RNF4-216ENST00000511859 TNRC6CQ9HCJ0 1690 aaKnown RBP16.18■□□□□ 0.18
RNF4-216ENST00000511859 TONSLQ96HA7 1378 aa16.17■□□□□ 0.18
RNF4-216ENST00000511859 PHKG2P15735 406 aa16.17■□□□□ 0.18
RNF4-216ENST00000511859 ZNF831Q5JPB2 1677 aa16.16■□□□□ 0.18
RNF4-216ENST00000511859 HSPA1AP0DMV8 641 aaKnown RBP16.16■□□□□ 0.18
RNF4-216ENST00000511859 HSPA1BP0DMV9 641 aaKnown RBP16.16■□□□□ 0.18
RNF4-216ENST00000511859 CNTNAP4Q9C0A0 1308 aa16.16■□□□□ 0.18
RNF4-216ENST00000511859 ZC3H4Q9UPT8 1303 aaKnown RBP16.16■□□□□ 0.18
RNF4-216ENST00000511859 ERVV-2B6SEH9 535 aa16.15■□□□□ 0.18
RNF4-216ENST00000511859 SLC4A9Q96Q91 983 aa16.15■□□□□ 0.18
RNF4-216ENST00000511859 RBM42Q9BTD8 480 aaKnown RBP16.15■□□□□ 0.18
RNF4-216ENST00000511859 VEGFAP15692 232 aaPredicted RBP16.14■□□□□ 0.17
RNF4-216ENST00000511859 EYA1Q99502 592 aa16.14■□□□□ 0.17
RNF4-216ENST00000511859 EMILIN1Q9Y6C2 1016 aa16.14■□□□□ 0.17
RNF4-216ENST00000511859 WASHC2AQ641Q2 1341 aa16.14■□□□□ 0.17
RNF4-216ENST00000511859 KDRP35968 1356 aa16.14■□□□□ 0.17
RNF4-216ENST00000511859 MYH14Q7Z406 1995 aaKnown RBP16.14■□□□□ 0.17
RNF4-216ENST00000511859 PPM1GO15355 546 aaPredicted RBP16.13■□□□□ 0.17
RNF4-216ENST00000511859 KIF20BQ96Q89 1820 aa16.12■□□□□ 0.17
RNF4-216ENST00000511859 GLTPD2A6NH11 291 aa16.12■□□□□ 0.17
RNF4-216ENST00000511859 HSP90AB1P08238 724 aaKnown RBP16.12■□□□□ 0.17
RNF4-216ENST00000511859 COL5A3P25940 1745 aaPredicted RBP16.11■□□□□ 0.17
RNF4-216ENST00000511859 LMNB1P20700 586 aa16.1■□□□□ 0.17
RNF4-216ENST00000511859 CHRNA5P30532 468 aa16.1■□□□□ 0.17
RNF4-216ENST00000511859 CDCA8Q53HL2 280 aa16.1■□□□□ 0.17
RNF4-216ENST00000511859 FKBP8Q14318 412 aa16.09■□□□□ 0.17
RNF4-216ENST00000511859 KDM6AO15550 1401 aaPredicted RBP16.08■□□□□ 0.16
RNF4-216ENST00000511859 TM4SF1P30408 202 aa16.08■□□□□ 0.16
RNF4-216ENST00000511859 DDR1Q08345 913 aa16.08■□□□□ 0.16
RNF4-216ENST00000511859 USP42Q9H9J4 1324 aaKnown RBP16.08■□□□□ 0.16
RNF4-216ENST00000511859 CCDC88AQ3V6T2 1871 aa16.07■□□□□ 0.16
RNF4-216ENST00000511859 CRKLP46109 303 aaKnown RBP16.07■□□□□ 0.16
RNF4-216ENST00000511859 POLRMTO00411 1230 aaKnown RBP16.06■□□□□ 0.16
RNF4-216ENST00000511859 CABP4P57796 275 aa16.06■□□□□ 0.16
RNF4-216ENST00000511859 DPY19L2Q6NUT2 758 aa16.06■□□□□ 0.16
RNF4-216ENST00000511859 POTEDQ86YR6 584 aa16.06■□□□□ 0.16
RNF4-216ENST00000511859 CARD14Q9BXL6 1004 aa16.06■□□□□ 0.16
RNF4-216ENST00000511859 SRP68Q9UHB9 627 aaKnown RBP16.06■□□□□ 0.16
RNF4-216ENST00000511859 ANKRD26Q9UPS8 1709 aa16.05■□□□□ 0.16
RNF4-216ENST00000511859 RASSF7Q02833 373 aa16.05■□□□□ 0.16
RNF4-216ENST00000511859 PLEKHO1Q53GL0 409 aaPredicted RBP16.05■□□□□ 0.16
RNF4-216ENST00000511859 PTCD1O75127 700 aaKnown RBP16.04■□□□□ 0.16
RNF4-216ENST00000511859 ZPR1O75312 459 aa16.04■□□□□ 0.16
RNF4-216ENST00000511859 CREBZFQ9NS37 354 aa16.04■□□□□ 0.16
RNF4-216ENST00000511859 POLKQ9UBT6 870 aa16.04■□□□□ 0.16
RNF4-216ENST00000511859 SLC34A2O95436 690 aa16.03■□□□□ 0.16
RNF4-216ENST00000511859 AMOTQ4VCS5 1084 aa16.03■□□□□ 0.16
RNF4-216ENST00000511859 POTECB2RU33 542 aa16.02■□□□□ 0.16
RNF4-216ENST00000511859 EIF4A2Q14240 407 aaKnown RBP16.02■□□□□ 0.16
RNF4-216ENST00000511859 TTLL6Q8N841 843 aa16.02■□□□□ 0.16
RNF4-216ENST00000511859 PRDM10Q9NQV6 1147 aa16.02■□□□□ 0.16
RNF4-216ENST00000511859 MTHFSP49914 203 aa16.01■□□□□ 0.15
RNF4-216ENST00000511859 INTS5Q6P9B9 1019 aaKnown RBP16■□□□□ 0.15
RNF4-216ENST00000511859 NFATC2IPQ8NCF5 419 aa16■□□□□ 0.15
RNF4-216ENST00000511859 USPL1Q5W0Q7 1092 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms