RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 USP54Q70EL1 1684 aa22.07■■□□□ 1.12
CCHCR1-228ENST00000509552 ISY1Q9ULR0 285 aaKnown RBP22.06■■□□□ 1.12
CCHCR1-228ENST00000509552 NWD1Q149M9 1564 aa22.06■■□□□ 1.12
CCHCR1-228ENST00000509552 ERC2O15083 957 aa22.06■■□□□ 1.12
CCHCR1-228ENST00000509552 NECTIN2Q92692 538 aa22.06■■□□□ 1.12
CCHCR1-228ENST00000509552 FAM208AQ9UK61 1670 aaKnown RBP22.05■■□□□ 1.12
CCHCR1-228ENST00000509552 GOLGA6L22H0YM25 854 aa22.05■■□□□ 1.12
CCHCR1-228ENST00000509552 ST18O60284 1047 aa22.05■■□□□ 1.12
CCHCR1-228ENST00000509552 LRRCC1Q9C099 1032 aa22.05■■□□□ 1.12
CCHCR1-228ENST00000509552 EXOC6BQ9Y2D4 811 aa22.05■■□□□ 1.12
CCHCR1-228ENST00000509552 MRE11P49959 708 aa22.05■■□□□ 1.12
CCHCR1-228ENST00000509552 MARF1Q9Y4F3 1742 aaKnown RBP22.04■■□□□ 1.12
CCHCR1-228ENST00000509552 ATP8B2P98198 1209 aa22.04■■□□□ 1.12
CCHCR1-228ENST00000509552 PHF8Q9UPP1 1060 aa22.03■■□□□ 1.12
CCHCR1-228ENST00000509552 CACNA1FO60840 1977 aa22.02■■□□□ 1.12
CCHCR1-228ENST00000509552 SSFA2P28290 1259 aa22.02■■□□□ 1.12
CCHCR1-228ENST00000509552 NUCB2P80303 420 aa22.01■■□□□ 1.11
CCHCR1-228ENST00000509552 CLEC17AQ6ZS10 378 aa22.01■■□□□ 1.11
CCHCR1-228ENST00000509552 PXDNLA1KZ92 1463 aa22.01■■□□□ 1.11
CCHCR1-228ENST00000509552 HDGFL1Q5TGJ6 251 aa22■■□□□ 1.11
CCHCR1-228ENST00000509552 PNMA6EA0A0J9YXQ4 647 aa22■■□□□ 1.11
CCHCR1-228ENST00000509552 USHBP1Q8N6Y0 703 aa22■■□□□ 1.11
CCHCR1-228ENST00000509552 IP6K1Q92551 441 aa22■■□□□ 1.11
CCHCR1-228ENST00000509552 MX1P20591 662 aa21.99■■□□□ 1.11
CCHCR1-228ENST00000509552 CWC22Q9HCG8 908 aaKnown RBP21.99■■□□□ 1.11
CCHCR1-228ENST00000509552 LRRFIP2Q9Y608 721 aaKnown RBP21.99■■□□□ 1.11
CCHCR1-228ENST00000509552 IBTKQ9P2D0 1353 aaPredicted RBP21.99■■□□□ 1.11
CCHCR1-228ENST00000509552 UBTFL1P0CB47 393 aaPredicted RBP21.98■■□□□ 1.11
CCHCR1-228ENST00000509552 SALL3Q9BXA9 1300 aa21.98■■□□□ 1.11
CCHCR1-228ENST00000509552 CHMP4AQ9BY43 222 aa21.98■■□□□ 1.11
CCHCR1-228ENST00000509552 SRCIN1Q9C0H9 1055 aa21.98■■□□□ 1.11
CCHCR1-228ENST00000509552 GRPEL1Q9HAV7 217 aa21.98■■□□□ 1.11
CCHCR1-228ENST00000509552 BAG4O95429 457 aaKnown RBP21.96■■□□□ 1.11
CCHCR1-228ENST00000509552 USP44Q9H0E7 712 aa21.96■■□□□ 1.11
CCHCR1-228ENST00000509552 PANK2Q9BZ23 570 aa21.96■■□□□ 1.11
CCHCR1-228ENST00000509552 CEMIPQ8WUJ3 1361 aa21.95■■□□□ 1.1
CCHCR1-228ENST00000509552 ANKLE2Q86XL3 938 aa21.95■■□□□ 1.1
CCHCR1-228ENST00000509552 LTN1O94822 1766 aa21.95■■□□□ 1.1
CCHCR1-228ENST00000509552 N4BP2Q86UW6 1770 aaPredicted RBP21.95■■□□□ 1.1
CCHCR1-228ENST00000509552 MCCP23508 829 aa21.95■■□□□ 1.1
CCHCR1-228ENST00000509552 TSHZ3Q63HK5 1081 aa21.95■■□□□ 1.1
CCHCR1-228ENST00000509552 KCNH5Q8NCM2 988 aa21.95■■□□□ 1.1
CCHCR1-228ENST00000509552 ESYT1Q9BSJ8 1104 aa21.95■■□□□ 1.1
CCHCR1-228ENST00000509552 TRIM6-TRIM34B2RNG4 842 aa21.94■■□□□ 1.1
CCHCR1-228ENST00000509552 PSME1Q06323 249 aa21.94■■□□□ 1.1
CCHCR1-228ENST00000509552 STAP2Q9UGK3 403 aa21.94■■□□□ 1.1
CCHCR1-228ENST00000509552 RILPL2Q969X0 211 aa21.94■■□□□ 1.1
CCHCR1-228ENST00000509552 PHAXQ9H814 394 aaKnown RBP21.94■■□□□ 1.1
CCHCR1-228ENST00000509552 HOXB7P09629 217 aa21.93■■□□□ 1.1
CCHCR1-228ENST00000509552 NBPF6Q5VWK0 638 aa21.93■■□□□ 1.1
CCHCR1-228ENST00000509552 NBPF4Q96M43 638 aa21.93■■□□□ 1.1
CCHCR1-228ENST00000509552 AOX1Q06278 1338 aa21.92■■□□□ 1.1
CCHCR1-228ENST00000509552 EIF2S2P20042 333 aaKnown RBP21.92■■□□□ 1.1
CCHCR1-228ENST00000509552 SSH3Q8TE77 659 aa21.92■■□□□ 1.1
CCHCR1-228ENST00000509552 CHD2O14647 1828 aaKnown RBP21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 RAB11FIP3O75154 756 aa21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 EIF4A1P60842 406 aaKnown RBP21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 ESCO1Q5FWF5 840 aa21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 DDX49Q9Y6V7 483 aaKnown RBP21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 NFAT5O94916 1531 aa21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 ZBTB7CA1YPR0 619 aa21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 CYP2E1P05181 493 aaPredicted RBP21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 KLHL40Q2TBA0 621 aa21.91■■□□□ 1.1
CCHCR1-228ENST00000509552 CHMLP26374 656 aa21.9■■□□□ 1.1
CCHCR1-228ENST00000509552 MCM2P49736 904 aa21.9■■□□□ 1.1
CCHCR1-228ENST00000509552 NEK4P51957 841 aa21.9■■□□□ 1.1
CCHCR1-228ENST00000509552 TEFQ10587 303 aa21.9■■□□□ 1.1
CCHCR1-228ENST00000509552 LGR6Q9HBX8 967 aa21.9■■□□□ 1.1
CCHCR1-228ENST00000509552 MCTP1Q6DN14 999 aa21.89■■□□□ 1.1
CCHCR1-228ENST00000509552 ANAPC15P60006 121 aa21.89■■□□□ 1.09
CCHCR1-228ENST00000509552 AKAP4Q5JQC9 854 aa21.89■■□□□ 1.09
CCHCR1-228ENST00000509552 ANO2Q9NQ90 1003 aa21.89■■□□□ 1.09
CCHCR1-228ENST00000509552 MED1Q15648 1581 aaPredicted RBP21.88■■□□□ 1.09
CCHCR1-228ENST00000509552 PLEKHO1Q53GL0 409 aaPredicted RBP21.88■■□□□ 1.09
CCHCR1-228ENST00000509552 PPP1R42Q7Z4L9 355 aa21.88■■□□□ 1.09
CCHCR1-228ENST00000509552 TUBGCP6Q96RT7 1819 aa21.88■■□□□ 1.09
CCHCR1-228ENST00000509552 SURF6O75683 361 aaKnown RBP21.88■■□□□ 1.09
CCHCR1-228ENST00000509552 ZGPATQ8N5A5 531 aaKnown RBP21.88■■□□□ 1.09
CCHCR1-228ENST00000509552 RBM33Q96EV2 1170 aaKnown RBP21.88■■□□□ 1.09
CCHCR1-228ENST00000509552 AK9Q5TCS8 1911 aa21.87■■□□□ 1.09
CCHCR1-228ENST00000509552 ZNF530Q6P9A1 599 aaPredicted RBP21.87■■□□□ 1.09
CCHCR1-228ENST00000509552 IL1RAPL2Q9NP60 686 aa21.87■■□□□ 1.09
CCHCR1-228ENST00000509552 CHPF2Q9P2E5 772 aa21.87■■□□□ 1.09
CCHCR1-228ENST00000509552 ADGRL3Q9HAR2 1447 aa21.87■■□□□ 1.09
CCHCR1-228ENST00000509552 BTBD11A6QL63 1104 aa21.86■■□□□ 1.09
CCHCR1-228ENST00000509552 POLA2Q14181 598 aa21.86■■□□□ 1.09
CCHCR1-228ENST00000509552 GAS2L3Q86XJ1 694 aa21.86■■□□□ 1.09
CCHCR1-228ENST00000509552 DNAAF4Q8WXU2 420 aa21.86■■□□□ 1.09
CCHCR1-228ENST00000509552 AMOTQ4VCS5 1084 aa21.86■■□□□ 1.09
CCHCR1-228ENST00000509552 RRAGDQ9NQL2 400 aaPredicted RBP21.86■■□□□ 1.09
CCHCR1-228ENST00000509552 SRGAP3O43295 1099 aa21.85■■□□□ 1.09
CCHCR1-228ENST00000509552 PKP1Q13835 747 aa21.85■■□□□ 1.09
CCHCR1-228ENST00000509552 KDM3BQ7LBC6 1761 aa21.84■■□□□ 1.09
CCHCR1-228ENST00000509552 PI4KAP2A4QPH2 592 aa21.84■■□□□ 1.09
CCHCR1-228ENST00000509552 EPB41L2O43491 1005 aaKnown RBP21.84■■□□□ 1.09
CCHCR1-228ENST00000509552 BEND3Q5T5X7 828 aa21.84■■□□□ 1.09
CCHCR1-228ENST00000509552 PI4KAP1Q8N8J0 262 aa21.84■■□□□ 1.09
CCHCR1-228ENST00000509552 RHPN1Q8TCX5 695 aa21.84■■□□□ 1.09
CCHCR1-228ENST00000509552 KIF1BPQ96EK5 621 aa21.84■■□□□ 1.09
CCHCR1-228ENST00000509552 NUTM1Q86Y26 1132 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms