RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 C5P01031 1676 aa9.42□□□□□ -0.9
NUP54-204ENST00000506098 CICQ96RK0 1608 aaPredicted RBP9.42□□□□□ -0.9
NUP54-204ENST00000506098 BCL9O00512 1426 aa9.41□□□□□ -0.9
NUP54-204ENST00000506098 E9PSI1 815 aa9.41□□□□□ -0.9
NUP54-204ENST00000506098 DCTN1Q14203 1278 aa9.41□□□□□ -0.9
NUP54-204ENST00000506098 MCM10Q7L590 875 aa9.41□□□□□ -0.9
NUP54-204ENST00000506098 LGR6Q9HBX8 967 aa9.41□□□□□ -0.9
NUP54-204ENST00000506098 SPINK5Q9NQ38 1064 aaPredicted RBP9.41□□□□□ -0.9
NUP54-204ENST00000506098 BABAM1Q9NWV8 329 aa9.41□□□□□ -0.9
NUP54-204ENST00000506098 ERVV-2B6SEH9 535 aa9.4□□□□□ -0.9
NUP54-204ENST00000506098 GNAI1P63096 354 aa9.4□□□□□ -0.9
NUP54-204ENST00000506098 DUSP27Q5VZP5 1158 aa9.4□□□□□ -0.9
NUP54-204ENST00000506098 MPRIPQ6WCQ1 1025 aa9.4□□□□□ -0.9
NUP54-204ENST00000506098 CDCA7LQ96GN5 454 aa9.4□□□□□ -0.9
NUP54-204ENST00000506098 CFAP44Q96MT7 982 aa9.4□□□□□ -0.9
NUP54-204ENST00000506098 IFT57Q9NWB7 429 aa9.4□□□□□ -0.9
NUP54-204ENST00000506098 COL5A3P25940 1745 aaPredicted RBP9.39□□□□□ -0.91
NUP54-204ENST00000506098 CHL1O00533 1208 aa9.39□□□□□ -0.91
NUP54-204ENST00000506098 TAF7Q15545 349 aaPredicted RBP9.39□□□□□ -0.91
NUP54-204ENST00000506098 MARCH10Q8NA82 808 aaPredicted RBP9.39□□□□□ -0.91
NUP54-204ENST00000506098 DDX54Q8TDD1 881 aaKnown RBP9.39□□□□□ -0.91
NUP54-204ENST00000506098 THUMPD2Q9BTF0 503 aaKnown RBP9.39□□□□□ -0.91
NUP54-204ENST00000506098 SLC52A2Q9HAB3 445 aa9.39□□□□□ -0.91
NUP54-204ENST00000506098 RGPD3A6NKT7 1758 aaPredicted RBP9.39□□□□□ -0.91
NUP54-204ENST00000506098 RGPD4Q7Z3J3 1758 aa9.39□□□□□ -0.91
NUP54-204ENST00000506098 TNS1Q9HBL0 1735 aaKnown RBP9.39□□□□□ -0.91
NUP54-204ENST00000506098 MYH14Q7Z406 1995 aaKnown RBP9.39□□□□□ -0.91
NUP54-204ENST00000506098 RXRBP28702 533 aa9.38□□□□□ -0.91
NUP54-204ENST00000506098 POTEAQ6S8J7 498 aa9.38□□□□□ -0.91
NUP54-204ENST00000506098 SEPT12Q8IYM1 358 aa9.38□□□□□ -0.91
NUP54-204ENST00000506098 MYH16Q9H6N6 1097 aa9.38□□□□□ -0.91
NUP54-204ENST00000506098 TJP1Q07157 1748 aa9.37□□□□□ -0.91
NUP54-204ENST00000506098 TEFQ10587 303 aa9.37□□□□□ -0.91
NUP54-204ENST00000506098 N4BP2Q86UW6 1770 aaPredicted RBP9.37□□□□□ -0.91
NUP54-204ENST00000506098 FANCIQ9NVI1 1328 aa9.36□□□□□ -0.91
NUP54-204ENST00000506098 NFATC2IPQ8NCF5 419 aa9.36□□□□□ -0.91
NUP54-204ENST00000506098 MBIPQ9NS73 344 aa9.36□□□□□ -0.91
NUP54-204ENST00000506098 RGS12O14924 1447 aa9.36□□□□□ -0.91
NUP54-204ENST00000506098 HEG1Q9ULI3 1381 aa9.36□□□□□ -0.91
NUP54-204ENST00000506098 KCPQ6ZWJ8 1503 aa9.36□□□□□ -0.91
NUP54-204ENST00000506098 CENPBP07199 599 aaPredicted RBP9.35□□□□□ -0.91
NUP54-204ENST00000506098 CABP4P57796 275 aa9.35□□□□□ -0.91
NUP54-204ENST00000506098 RREB1Q92766 1687 aa9.35□□□□□ -0.91
NUP54-204ENST00000506098 SOS1Q07889 1333 aaPredicted RBP9.34□□□□□ -0.91
NUP54-204ENST00000506098 EP400Q96L91 3159 aa9.34□□□□□ -0.91
NUP54-204ENST00000506098 A0A0G2JS52 829 aa9.34□□□□□ -0.91
NUP54-204ENST00000506098 BTBD11A6QL63 1104 aa9.34□□□□□ -0.91
NUP54-204ENST00000506098 CT47B1P0C2W7 299 aaPredicted RBP9.34□□□□□ -0.91
NUP54-204ENST00000506098 KRT27Q7Z3Y8 459 aa9.34□□□□□ -0.91
NUP54-204ENST00000506098 TSR2Q969E8 191 aaKnown RBP9.34□□□□□ -0.91
NUP54-204ENST00000506098 TSPYL4Q9UJ04 414 aa9.34□□□□□ -0.91
NUP54-204ENST00000506098 LAS1LQ9Y4W2 734 aaKnown RBP9.34□□□□□ -0.91
NUP54-204ENST00000506098 NUP98P52948 1817 aa9.33□□□□□ -0.92
NUP54-204ENST00000506098 EIF4A1P60842 406 aaKnown RBP9.33□□□□□ -0.92
NUP54-204ENST00000506098 EXOSC9Q06265 439 aaKnown RBP9.33□□□□□ -0.92
NUP54-204ENST00000506098 ZNF790Q6PG37 636 aa9.33□□□□□ -0.92
NUP54-204ENST00000506098 PIGBQ92521 554 aa9.33□□□□□ -0.92
NUP54-204ENST00000506098 TMOD3Q9NYL9 352 aa9.33□□□□□ -0.92
NUP54-204ENST00000506098 MIS18AQ9NYP9 233 aa9.33□□□□□ -0.92
NUP54-204ENST00000506098 UBR3Q6ZT12 1888 aa9.32□□□□□ -0.92
NUP54-204ENST00000506098 KCNQ3O43525 872 aa9.32□□□□□ -0.92
NUP54-204ENST00000506098 PRIM1P49642 420 aaKnown RBP9.32□□□□□ -0.92
NUP54-204ENST00000506098 FAM196AQ6ZSG2 479 aa9.32□□□□□ -0.92
NUP54-204ENST00000506098 ZNF428Q96B54 188 aa9.32□□□□□ -0.92
NUP54-204ENST00000506098 AFDNP55196 1824 aaKnown RBP9.31□□□□□ -0.92
NUP54-204ENST00000506098 TUBGCP6Q96RT7 1819 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 EIF5BO60841 1220 aaKnown RBP9.31□□□□□ -0.92
NUP54-204ENST00000506098 VAMP4O75379 141 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 HOXB7P09629 217 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 SLC39A6Q13433 755 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 C8orf58Q8NAV2 365 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 CNKSR2Q8WXI2 1034 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 ACSBG1Q96GR2 724 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 ATG3Q9NT62 314 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 ANKRD36CQ5JPF3 1778 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 ARFGEF2Q9Y6D5 1785 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 QSER1Q2KHR3 1735 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 NUP188Q5SRE5 1749 aa9.31□□□□□ -0.92
NUP54-204ENST00000506098 KCNQ2O43526 872 aa9.3□□□□□ -0.92
NUP54-204ENST00000506098 TWISTNBQ3B726 338 aaPredicted RBP9.3□□□□□ -0.92
NUP54-204ENST00000506098 FAM182BQ5T319 152 aa9.3□□□□□ -0.92
NUP54-204ENST00000506098 TSPYL6Q8N831 410 aa9.3□□□□□ -0.92
NUP54-204ENST00000506098 ASAP1Q9ULH1 1129 aa9.3□□□□□ -0.92
NUP54-204ENST00000506098 GIGYF1O75420 1035 aaPredicted RBP9.29□□□□□ -0.92
NUP54-204ENST00000506098 BRPF1P55201 1214 aaPredicted RBP9.29□□□□□ -0.92
NUP54-204ENST00000506098 MAPK8IP2Q13387 824 aaPredicted RBP9.29□□□□□ -0.92
NUP54-204ENST00000506098 KRT24Q2M2I5 525 aa9.29□□□□□ -0.92
NUP54-204ENST00000506098 ALDH1L2Q3SY69 923 aa9.29□□□□□ -0.92
NUP54-204ENST00000506098 TTC5Q8N0Z6 440 aa9.29□□□□□ -0.92
NUP54-204ENST00000506098 VSIG10Q8N0Z9 540 aa9.29□□□□□ -0.92
NUP54-204ENST00000506098 SMARCC1Q92922 1105 aaPredicted RBP9.29□□□□□ -0.92
NUP54-204ENST00000506098 ZNF496Q96IT1 587 aaPredicted RBP9.29□□□□□ -0.92
NUP54-204ENST00000506098 FMNL2Q96PY5 1086 aa9.29□□□□□ -0.92
NUP54-204ENST00000506098 CHMP4AQ9BY43 222 aa9.29□□□□□ -0.92
NUP54-204ENST00000506098 BCL11BQ9C0K0 894 aaPredicted RBP9.29□□□□□ -0.92
NUP54-204ENST00000506098 RCAN3Q9UKA8 241 aa9.29□□□□□ -0.92
NUP54-204ENST00000506098 BCORQ6W2J9 1755 aa9.28□□□□□ -0.92
NUP54-204ENST00000506098 SNRPA1P09661 255 aaKnown RBP9.28□□□□□ -0.92
NUP54-204ENST00000506098 RARSP54136 660 aaKnown RBP9.28□□□□□ -0.92
NUP54-204ENST00000506098 SYTL4Q96C24 671 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms